Rroxscaffold_4G00331230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000176
Physical Location & Seq
Forward (+)
65096406 .. 65101363
4958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00331230.1

Sequence Viewer

Length: 231 bp
ATGCAACTGCTCGGAATCAAGAAAGAGAAAATCCGGTCTACGTCCCTCACGCTCAAGAACTTCGCGGGGACCGTAACAAAGACCCGGGATTACTTTGCTTACGCATCAAGGTTGGCCTGCGCAGAGGAGTTTAGAGCGCCGCGTGTTCTTCGGCCTAAGCGAAACCGGAGAATACCATCCGGATTTCCGAGAGACCAAAGACATGCGGCTAGACACGAGAGTAGGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.86

Weight (kDa)

11.52

Isoelectric Point (pI)

58.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 121
AccI GTMKAC 1 cut(s) 38
AccII CGCG 2 cut(s) 65, 142
AccIII TCCGGA 1 cut(s) 179
AciI CCGC 3 cut(s) 65, 140, 206
Alw26I GTCTC 1 cut(s) 186
Ama87I CYCGRG 1 cut(s) 84
Aor13HI TCCGGA 1 cut(s) 179
AoxI GGCC 3 cut(s) 114, 152, 224
AspLEI GCGC 2 cut(s) 122, 139
AspS9I GGNCC 1 cut(s) 69
AsuC2I CCSGG 2 cut(s) 85, 86
AvaI CYCGRG 1 cut(s) 84
AvaII GGWCC 1 cut(s) 69
BauI CACGAG 1 cut(s) 215
BccI CCATC 1 cut(s) 184
BcnI CCSGG 2 cut(s) 85, 86
BcoDI GTCTC 1 cut(s) 186
BfaI CTAG 1 cut(s) 210
BfoI RGCGCY 1 cut(s) 140
BisI GCNGC 2 cut(s) 140, 207
BlsI GCNGC 2 cut(s) 141, 208
Bme1390I CCNGG 2 cut(s) 85, 86
Bme18I GGWCC 1 cut(s) 69
BmeT110I CYCGRG 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 70
BmrFI CCNGG 2 cut(s) 85, 86
BmsI GCATC 1 cut(s) 113
Bpu10I CCTNAGC 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 38
BpuMI CCSGG 2 cut(s) 85, 86
BsaI GGTCTC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 84
BsaWI WCCGGW 3 cut(s) 33, 165, 179
BseAI TCCGGA 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 176
BseRI GAGGAG 1 cut(s) 140
Bsh1236I CGCG 2 cut(s) 65, 142
BshFI GGCC 3 cut(s) 116, 154, 226
BsiHKCI CYCGRG 1 cut(s) 84
BsiSI CCGG 4 cut(s) 34, 85, 166, 180
BslFI GGGAC 2 cut(s) 28, 82
BsmAI GTCTC 1 cut(s) 186
BsmFI GGGAC 2 cut(s) 28, 82
BsnI GGCC 3 cut(s) 116, 154, 226
Bso31I GGTCTC 1 cut(s) 186
BsoBI CYCGRG 1 cut(s) 84
Bsp13I TCCGGA 1 cut(s) 179
BspACI CCGC 3 cut(s) 65, 140, 206
BspANI GGCC 3 cut(s) 116, 154, 226
BspEI TCCGGA 1 cut(s) 179
BspFNI CGCG 2 cut(s) 65, 142
BspLI GGNNCC 1 cut(s) 70
BspTNI GGTCTC 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 84
BssSI CACGAG 1 cut(s) 215
Bst2BI CACGAG 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 73
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 176
BstFNI CGCG 2 cut(s) 65, 142
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 2 cut(s) 122, 139
BstMAI GTCTC 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 206
BstSCI CCNGG 2 cut(s) 83, 84
BstUI CGCG 2 cut(s) 65, 142
BsuRI GGCC 3 cut(s) 116, 154, 226
BtsCI GGATG 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 118
CfoI GCGC 2 cut(s) 122, 139
Cfr13I GGNCC 1 cut(s) 69
Cfr9I CCCGGG 1 cut(s) 84
CviAII CATG 1 cut(s) 203
CviJI RGCY 4 cut(s) 116, 154, 209, 226
CviKI_1 RGCY 4 cut(s) 116, 154, 209, 226
DdeI CTNAG 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 84
FaeI CATG 1 cut(s) 206
FaiI YATR 2 cut(s) 204, 229
FaqI GGGAC 2 cut(s) 28, 82
FatI CATG 1 cut(s) 202
FauI CCCGC 1 cut(s) 58
FblI GTMKAC 1 cut(s) 38
Fnu4HI GCNGC 2 cut(s) 140, 207
FokI GGATG 1 cut(s) 163
Fsp4HI GCNGC 2 cut(s) 140, 207
FspBI CTAG 1 cut(s) 210
FspI TGCGCA 1 cut(s) 121
GlaI GCGC 2 cut(s) 121, 138
GluI GCNGC 2 cut(s) 140, 207
HaeII RGCGCY 1 cut(s) 140
HaeIII GGCC 3 cut(s) 116, 154, 226
HapII CCGG 4 cut(s) 34, 85, 166, 180
HhaI GCGC 2 cut(s) 122, 139
Hin1II CATG 1 cut(s) 206
Hin6I GCGC 2 cut(s) 120, 137
HinP1I GCGC 2 cut(s) 120, 137
HinfI GANTC 1 cut(s) 15
HpaII CCGG 4 cut(s) 34, 85, 166, 180
Hpy166II GTNNAC 1 cut(s) 39
Hpy188I TCNGA 2 cut(s) 14, 189
Hpy188III TCNNGA 3 cut(s) 19, 55, 180
Hpy8I GTNNAC 1 cut(s) 39
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 1 cut(s) 41
Hsp92II CATG 1 cut(s) 206
HspAI GCGC 2 cut(s) 120, 137
Kpn2I TCCGGA 1 cut(s) 179
LpnPI CCDG 5 cut(s) 47, 98, 130, 179, 193
LweI GCATC 1 cut(s) 113
MaeI CTAG 1 cut(s) 210
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 1 cut(s) 73
MboII GAAGA 1 cut(s) 140
MnlI CCTC 2 cut(s) 56, 118
MroI TCCGGA 1 cut(s) 179
MspI CCGG 4 cut(s) 34, 85, 166, 180
MspR9I CCNGG 2 cut(s) 85, 86
MvnI CGCG 2 cut(s) 65, 142
NciI CCSGG 2 cut(s) 85, 86
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 1 cut(s) 70
NsbI TGCGCA 1 cut(s) 121
NspI RCATGY 1 cut(s) 206
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 157
PfeI GAWTC 1 cut(s) 15
PkrI GCNGC 2 cut(s) 141, 208
PspN4I GGNNCC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 69
SatI GCNGC 2 cut(s) 140, 207
Sau96I GGNCC 1 cut(s) 69
ScrFI CCNGG 2 cut(s) 85, 86
SetI ASST 2 cut(s) 44, 113
SfaNI GCATC 1 cut(s) 113
SinI GGWCC 1 cut(s) 69
SmaI CCCGGG 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
SsiI CCGC 3 cut(s) 65, 140, 206
SspMI CTAG 1 cut(s) 210
StyD4I CCNGG 2 cut(s) 83, 84
TaaI ACNGT 1 cut(s) 73
TaiI ACGT 1 cut(s) 44
TauI GCSGC 2 cut(s) 142, 209
TfiI GAWTC 1 cut(s) 15
TspMI CCCGGG 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 69
XceI RCATGY 1 cut(s) 206
XmaI CCCGGG 1 cut(s) 84
XmiI GTMKAC 1 cut(s) 38
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.