Rmu_co8305941.1_g000001

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8305941.1
OG0000176
Physical Location & Seq
Reverse (-)
2 .. 334
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8305941.1_g000001.1.cds

Sequence Viewer

Length: 333 bp
atggattacgacctctcaggggaaggaattgaggccttccactcactatacgaacgactgtcatcatacttggtggaaaaagaggcctacgatcgaatcgctaccttggaggccgtcaatgaagaactttctgatcaggagcgagaggatgaaatagagattcagcttgctccggcagcgctggacgatacgcctcctaaagtcagagaccctattgaaaaggttaatctgggaacagtagacgagctcatggaagtggctatcagcgcttacctagagcctagcgagaaacagaggcacacttctttgttattagagttcacagattgcttc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

111

Amino Acids

12.65

Weight (kDa)

4.12

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 240
AfeI AGCGCT 2 cut(s) 180, 268
AfiI CCNNNNNNNGG 1 cut(s) 19
AgsI TTSAA 1 cut(s) 218
AluBI AGCT 2 cut(s) 166, 247
AluI AGCT 2 cut(s) 166, 247
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 201
Aor51HI AGCGCT 2 cut(s) 180, 268
AoxI GGCC 3 cut(s) 33, 84, 111
ApeKI GCWGC 1 cut(s) 176
AspLEI GCGC 2 cut(s) 181, 269
BanII GRGCYC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 188
BceAI ACGGC 1 cut(s) 98
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 2 cut(s) 275, 282
BfoI RGCGCY 2 cut(s) 182, 270
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
BsaI GGTCTC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 105
Bsc4I CCNNNNNNNGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 19
BseMII CTCAG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 188
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 3 cut(s) 35, 86, 113
BsiEI CGRYCG 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 249
BsiSI CCGG 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 201
BsnI GGCC 3 cut(s) 35, 86, 113
Bso31I GGTCTC 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 2 cut(s) 91, 133
BspANI GGCC 3 cut(s) 35, 86, 113
BspCNI CTCAG 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 2 cut(s) 91, 133
BssT1I CCWWGG 1 cut(s) 105
Bst4CI ACNGT 2 cut(s) 60, 238
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 16
BstF5I GGATG 1 cut(s) 154
BstH2I RGCGCY 2 cut(s) 182, 270
BstHHI GCGC 2 cut(s) 181, 269
BstKTI GATC 2 cut(s) 94, 136
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 2 cut(s) 91, 133
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 2 cut(s) 176, 266
BstV1I GCAGC 1 cut(s) 188
BsuRI GGCC 3 cut(s) 35, 86, 113
BtsCI GGATG 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 168
CfoI GCGC 2 cut(s) 181, 269
CviAII CATG 1 cut(s) 250
CviJI RGCY 7 cut(s) 35, 86, 113, 166, 247, 260, 280
CviKI_1 RGCY 7 cut(s) 35, 86, 113, 166, 247, 260, 280
DdeI CTNAG 1 cut(s) 16
DpnI GATC 2 cut(s) 93, 135
DpnII GATC 2 cut(s) 91, 133
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 105
Eco147I AGGCCT 2 cut(s) 35, 86
Eco24I GRGCYC 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 201
Eco47III AGCGCT 2 cut(s) 180, 268
Eco53kI GAGCTC 1 cut(s) 247
EcoICRI GAGCTC 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 105
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 1 cut(s) 253
FaiI YATR 3 cut(s) 49, 67, 251
FatI CATG 1 cut(s) 249
FbaI TGATCA 1 cut(s) 133
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 2 cut(s) 275, 282
GlaI GCGC 2 cut(s) 180, 268
GluI GCNGC 1 cut(s) 177
HaeII RGCGCY 2 cut(s) 182, 270
HaeIII GGCC 3 cut(s) 35, 86, 113
HapII CCGG 1 cut(s) 173
HhaI GCGC 2 cut(s) 181, 269
Hin1II CATG 1 cut(s) 253
Hin6I GCGC 2 cut(s) 179, 267
HinP1I GCGC 2 cut(s) 179, 267
HinfI GANTC 2 cut(s) 96, 160
HpaII CCGG 1 cut(s) 173
Hpy166II GTNNAC 2 cut(s) 241, 321
Hpy188I TCNGA 2 cut(s) 133, 206
Hpy188III TCNNGA 1 cut(s) 137
Hpy8I GTNNAC 2 cut(s) 241, 321
HpyAV CCTTC 2 cut(s) 17, 46
HpyCH4III ACNGT 2 cut(s) 60, 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 266
HpyF3I CTNAG 1 cut(s) 16
Hsp92II CATG 1 cut(s) 253
HspAI GCGC 2 cut(s) 179, 267
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 2 cut(s) 91, 133
LmnI GCTCC 2 cut(s) 139, 175
LpnPI CCDG 5 cut(s) 3, 122, 167, 186, 215
Lsp1109I GCAGC 1 cut(s) 188
MaeI CTAG 2 cut(s) 275, 282
MalI GATC 2 cut(s) 93, 135
MboI GATC 2 cut(s) 91, 133
MboII GAAGA 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 1 cut(s) 27
MnlI CCTC 7 cut(s) 23, 25, 76, 103, 139, 204, 288
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 1 cut(s) 254
MspI CCGG 1 cut(s) 173
MwoI GCNNNNNNNGC 2 cut(s) 176, 266
NdeII GATC 2 cut(s) 91, 133
NlaIII CATG 1 cut(s) 253
PceI AGGCCT 2 cut(s) 35, 86
PfeI GAWTC 2 cut(s) 96, 160
PkrI GCNGC 1 cut(s) 178
Ple19I CGATCG 1 cut(s) 94
Psp124BI GAGCTC 1 cut(s) 249
PvuI CGATCG 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 254
SacI GAGCTC 1 cut(s) 249
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 2 cut(s) 91, 133
SduI GDGCHC 1 cut(s) 249
SetI ASST 6 cut(s) 15, 107, 168, 225, 249, 276
SmiMI CAYNNNNRTG 1 cut(s) 254
Sse9I AATT 1 cut(s) 27
SseBI AGGCCT 2 cut(s) 35, 86
SspMI CTAG 2 cut(s) 275, 282
SstI GAGCTC 1 cut(s) 249
StuI AGGCCT 2 cut(s) 35, 86
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 2 cut(s) 60, 238
TaqI TCGA 1 cut(s) 94
TasI AATT 1 cut(s) 27
TfiI GAWTC 2 cut(s) 96, 160
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 2 cut(s) 135, 165
XmiI GTMKAC 1 cut(s) 240
XspI CTAG 2 cut(s) 275, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.