Rmu_sc0004549.1_g000015

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004549.1
OG0000176
Physical Location & Seq
Reverse (-)
57681 .. 58651
971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004549.1_g000015.1.cds

Sequence Viewer

Length: 789 bp
ctgggctatgactggatccacaggagttgttgtgtcacatccacccttcatcaggagctgattatatggaacaaagttgcggacaaggcgaaaattgtcaaagcagacccgcgaccttttttggtgtccgccagctacgtggacgcaaggtactacccagaaccaatctctcatttacaggtcgttggtattgatgataagggccgccccacaggggtgacggcctttgaattggcacaatggggtctcgcggttgcaaaaaaggacctcgaaaggcctggacatgcggtgccatctccaacagcattggatgatacaccgccaaaggttagagatcctacagaaaaggtaaatttgggcagtgacgcgaagccaatggaagtggcaataagcgcaaaattagagcctgatgaaaaacaggggctcatcaatttattgcgggaatataaggattgtttcgcagagaaatatgaagatatgcccagattatctcttgacttggtcttccgtaaactgtcgactatcctagatctaaatccagtgaagcaggagtccaggcgaatgaactcagaaacccaggtgttggttaaggaggaagtcgagaagatgcataagtcaggaatcatcaaggtagccaagtataatcagtggcactgttgttccggttcgaaagaagaatggcaaaatgaggctgtgcgtcgactaccacgatctcaatcaggccactcccaaagacgtttaccccatgccagtagcagacatgttggtggacgcaatagctggtcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

262

Amino Acids

29.69

Weight (kDa)

8.86

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 289
AccB7I CCANNNNNTGG 1 cut(s) 583
AccI GTMKAC 2 cut(s) 518, 700
AccII CGCG 3 cut(s) 112, 251, 368
AciI CCGC 8 cut(s) 80, 110, 129, 205, 251, 287, 320, 439
AclWI GGATC 3 cut(s) 10, 23, 329
AcsI RAATTY 1 cut(s) 352
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 3 cut(s) 52, 214, 583
AflIII ACRYGT 1 cut(s) 760
AgsI TTSAA 1 cut(s) 230
AjnI CCWGG 3 cut(s) 277, 554, 576
AleI CACNNNNGTG 1 cut(s) 215
AluBI AGCT 3 cut(s) 58, 135, 780
AluI AGCT 3 cut(s) 58, 135, 780
Alw26I GTCTC 1 cut(s) 251
AlwI GGATC 3 cut(s) 10, 23, 329
AlwNI CAGNNNCTG 1 cut(s) 58
AoxI GGCC 4 cut(s) 202, 222, 275, 721
ApoI RAATTY 1 cut(s) 352
AspLEI GCGC 1 cut(s) 395
AspS9I GGNCC 2 cut(s) 202, 265
AsuHPI GGTGA 1 cut(s) 229
AsuII TTCGAA 1 cut(s) 668
AvaII GGWCC 1 cut(s) 265
BamHI GGATCC 1 cut(s) 15
BanI GGYRCC 1 cut(s) 289
BanII GRGCYC 1 cut(s) 426
BbsI GAAGAC 1 cut(s) 496
BccI CCATC 1 cut(s) 301
BceAI ACGGC 1 cut(s) 237
BciT130I CCWGG 3 cut(s) 279, 556, 578
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 1 cut(s) 527
BfmI CTRYAG 1 cut(s) 339
BglII AGATCT 1 cut(s) 529
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
Bme1390I CCNGG 3 cut(s) 279, 556, 578
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 2 cut(s) 202, 265
BmiI GGNNCC 2 cut(s) 17, 291
BmrFI CCNGG 3 cut(s) 279, 556, 578
BmsI GCATC 1 cut(s) 597
BpiI GAAGAC 1 cut(s) 496
Bpu14I TTCGAA 1 cut(s) 668
BsaAI YACGTR 1 cut(s) 139
BsaBI GATNNNNATC 2 cut(s) 534, 715
BsaI GGTCTC 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 576
BsaWI WCCGGW 1 cut(s) 662
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 214, 583
Bse1I ACTGG 3 cut(s) 17, 539, 750
Bse8I GATNNNNATC 2 cut(s) 534, 715
BseBI CCWGG 3 cut(s) 279, 556, 578
BseDI CCNNGG 1 cut(s) 576
BseGI GGATG 2 cut(s) 38, 316
BseJI GATNNNNATC 2 cut(s) 534, 715
BseLI CCNNNNNNNGG 3 cut(s) 52, 214, 583
BseMII CTCAG 1 cut(s) 582
BseNI ACTGG 3 cut(s) 17, 539, 750
Bsh1236I CGCG 3 cut(s) 112, 251, 368
BshFI GGCC 4 cut(s) 204, 224, 277, 723
BshNI GGYRCC 1 cut(s) 289
BsiSI CCGG 1 cut(s) 663
BslI CCNNNNNNNGG 3 cut(s) 52, 214, 583
BsmAI GTCTC 1 cut(s) 251
BsnI GGCC 4 cut(s) 204, 224, 277, 723
Bso31I GGTCTC 1 cut(s) 251
Bsp119I TTCGAA 1 cut(s) 668
Bsp1286I GDGCHC 1 cut(s) 426
Bsp143I GATC 4 cut(s) 15, 334, 529, 710
BspACI CCGC 8 cut(s) 80, 110, 129, 205, 251, 287, 320, 439
BspANI GGCC 4 cut(s) 204, 224, 277, 723
BspCNI CTCAG 1 cut(s) 581
BspFNI CGCG 3 cut(s) 112, 251, 368
BspHI TCATGA 1 cut(s) 785
BspLI GGNNCC 2 cut(s) 17, 291
BspPI GGATC 3 cut(s) 10, 23, 329
BspT104I TTCGAA 1 cut(s) 668
BspT107I GGYRCC 1 cut(s) 289
BspTNI GGTCTC 1 cut(s) 251
BsrI ACTGG 3 cut(s) 17, 539, 750
BssECI CCNNGG 1 cut(s) 576
BssMI GATC 4 cut(s) 15, 334, 529, 710
Bst2UI CCWGG 3 cut(s) 279, 556, 578
Bst4CI ACNGT 2 cut(s) 516, 656
BstBAI YACGTR 1 cut(s) 139
BstBI TTCGAA 1 cut(s) 668
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 1 cut(s) 568
BstENI CCTNNNNNAGG 1 cut(s) 50
BstF5I GGATG 2 cut(s) 38, 316
BstFNI CGCG 3 cut(s) 112, 251, 368
BstHHI GCGC 1 cut(s) 395
BstKTI GATC 4 cut(s) 18, 337, 532, 713
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 4 cut(s) 15, 334, 529, 710
BstMWI GCNNNNNNNGC 2 cut(s) 86, 392
BstNI CCWGG 3 cut(s) 279, 556, 578
BstNSI RCATGY 2 cut(s) 287, 764
BstSCI CCNGG 3 cut(s) 277, 554, 576
BstSFI CTRYAG 1 cut(s) 339
BstUI CGCG 3 cut(s) 112, 251, 368
BstV2I GAAGAC 1 cut(s) 496
BstX2I RGATCY 3 cut(s) 15, 334, 529
BstXI CCANNNNNNTGG 1 cut(s) 139
BstYI RGATCY 3 cut(s) 15, 334, 529
BsuRI GGCC 4 cut(s) 204, 224, 277, 723
BtsCI GGATG 2 cut(s) 38, 316
BtsI GCAGTG 1 cut(s) 367
BtsIMutI CAGTG 4 cut(s) 367, 546, 652, 653
Cac8I GCNNGC 1 cut(s) 133
CaiI CAGNNNCTG 1 cut(s) 58
CciI TCATGA 1 cut(s) 785
CfoI GCGC 1 cut(s) 395
Cfr13I GGNCC 2 cut(s) 202, 265
CseI GACGC 4 cut(s) 152, 374, 686, 780
Csp6I GTAC 1 cut(s) 151
CspCI CAANNNNNGTGG 4 cut(s) 8, 43, 363, 398
CviAII CATG 4 cut(s) 284, 746, 761, 786
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 1 cut(s) 568
DpnI GATC 4 cut(s) 17, 336, 531, 712
DpnII GATC 4 cut(s) 15, 334, 529, 710
EciI GGCGGA 1 cut(s) 118
Eco147I AGGCCT 1 cut(s) 277
Eco24I GRGCYC 1 cut(s) 426
Eco31I GGTCTC 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 265
EcoNI CCTNNNNNAGG 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 265
EcoRII CCWGG 3 cut(s) 277, 554, 576
EcoT22I ATGCAT 1 cut(s) 612
EcoT38I GRGCYC 1 cut(s) 426
FaeI CATG 4 cut(s) 287, 749, 764, 789
FatI CATG 4 cut(s) 283, 745, 760, 785
FauI CCCGC 2 cut(s) 117, 432
FblI GTMKAC 2 cut(s) 518, 700
Fnu4HI GCNGC 1 cut(s) 205
FokI GGATG 2 cut(s) 25, 323
FriOI GRGCYC 1 cut(s) 426
Fsp4HI GCNGC 1 cut(s) 205
FspBI CTAG 1 cut(s) 527
GlaI GCGC 1 cut(s) 394
GluI GCNGC 1 cut(s) 205
HaeIII GGCC 4 cut(s) 204, 224, 277, 723
HapII CCGG 1 cut(s) 663
HgaI GACGC 4 cut(s) 152, 374, 686, 780
HhaI GCGC 1 cut(s) 395
Hin1II CATG 4 cut(s) 287, 749, 764, 789
Hin6I GCGC 1 cut(s) 393
HinP1I GCGC 1 cut(s) 393
HincII GTYRAC 2 cut(s) 519, 701
HindII GTYRAC 2 cut(s) 519, 701
HinfI GANTC 2 cut(s) 551, 621
HpaII CCGG 1 cut(s) 663
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 6 cut(s) 142, 512, 519, 701, 740, 770
Hpy188I TCNGA 1 cut(s) 571
Hpy188III TCNNGA 5 cut(s) 53, 494, 601, 618, 786
Hpy8I GTNNAC 6 cut(s) 142, 512, 519, 701, 740, 770
Hpy99I CGWCG 1 cut(s) 702
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 2 cut(s) 516, 656
HpyCH4IV ACGT 2 cut(s) 138, 736
HpyCH4V TGCA 2 cut(s) 257, 610
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 392
HpyF3I CTNAG 1 cut(s) 568
HpySE526I ACGT 2 cut(s) 138, 736
Hsp92II CATG 4 cut(s) 287, 749, 764, 789
HspAI GCGC 1 cut(s) 393
Kzo9I GATC 4 cut(s) 15, 334, 529, 710
LmnI GCTCC 1 cut(s) 55
LweI GCATC 1 cut(s) 597
MaeI CTAG 1 cut(s) 527
MaeII ACGT 2 cut(s) 138, 736
MaeIII GTNAC 3 cut(s) 34, 217, 362
MalI GATC 4 cut(s) 17, 336, 531, 712
MboI GATC 4 cut(s) 15, 334, 529, 710
MboII GAAGA 4 cut(s) 485, 496, 616, 686
MflI RGATCY 3 cut(s) 15, 334, 529
MhlI GDGCHC 1 cut(s) 426
MluCI AATT 5 cut(s) 93, 230, 352, 398, 430
MlyI GAGTC 1 cut(s) 560
MmeI TCCRAC 1 cut(s) 323
MnlI CCTC 3 cut(s) 278, 586, 682
Mph1103I ATGCAT 1 cut(s) 612
MseI TTAA 1 cut(s) 588
MslI CAYNNNNRTG 2 cut(s) 215, 765
MspI CCGG 1 cut(s) 663
MspR9I CCNGG 3 cut(s) 279, 556, 578
MvaI CCWGG 3 cut(s) 279, 556, 578
MvnI CGCG 3 cut(s) 112, 251, 368
MwoI GCNNNNNNNGC 2 cut(s) 86, 392
NdeII GATC 4 cut(s) 15, 334, 529, 710
NlaIII CATG 4 cut(s) 287, 749, 764, 789
NlaIV GGNNCC 2 cut(s) 17, 291
NmuCI GTSAC 3 cut(s) 34, 217, 362
NsiI ATGCAT 1 cut(s) 612
NspI RCATGY 2 cut(s) 287, 764
NspV TTCGAA 1 cut(s) 668
OliI CACNNNNGTG 1 cut(s) 215
PagI TCATGA 1 cut(s) 785
PceI AGGCCT 1 cut(s) 277
PciI ACATGT 1 cut(s) 760
PcsI WCGNNNNNNNCGW 1 cut(s) 706
PfeI GAWTC 1 cut(s) 621
PflFI GACNNNGTC 1 cut(s) 500
PflMI CCANNNNNTGG 1 cut(s) 583
PkrI GCNGC 1 cut(s) 206
PleI GAGTC 1 cut(s) 559
PpsI GAGTC 1 cut(s) 559
Ppu21I YACGTR 1 cut(s) 139
PpuMI RGGWCCY 1 cut(s) 265
PscI ACATGT 1 cut(s) 760
Psp5II RGGWCCY 1 cut(s) 265
Psp6I CCWGG 3 cut(s) 277, 554, 576
PspGI CCWGG 3 cut(s) 277, 554, 576
PspN4I GGNNCC 2 cut(s) 17, 291
PspPI GGNCC 2 cut(s) 202, 265
PspPPI RGGWCCY 1 cut(s) 265
PstNI CAGNNNCTG 1 cut(s) 58
PsuI RGATCY 3 cut(s) 15, 334, 529
PsyI GACNNNGTC 1 cut(s) 500
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 2 cut(s) 215, 765
SalI GTCGAC 2 cut(s) 517, 699
SaqAI TTAA 1 cut(s) 588
SatI GCNGC 1 cut(s) 205
Sau3AI GATC 4 cut(s) 15, 334, 529, 710
Sau96I GGNCC 2 cut(s) 202, 265
SchI GAGTC 1 cut(s) 560
ScrFI CCNGG 3 cut(s) 279, 556, 578
SduI GDGCHC 1 cut(s) 426
SfaNI GCATC 1 cut(s) 597
SfcI CTRYAG 1 cut(s) 339
SfuI TTCGAA 1 cut(s) 668
SinI GGWCC 1 cut(s) 265
SmiMI CAYNNNNRTG 2 cut(s) 215, 765
Sse9I AATT 5 cut(s) 93, 230, 352, 398, 430
SseBI AGGCCT 1 cut(s) 277
SsiI CCGC 8 cut(s) 80, 110, 129, 205, 251, 287, 320, 439
SspMI CTAG 1 cut(s) 527
StuI AGGCCT 1 cut(s) 277
StyD4I CCNGG 3 cut(s) 277, 554, 576
TaaI ACNGT 2 cut(s) 516, 656
TaiI ACGT 2 cut(s) 141, 739
TaqI TCGA 5 cut(s) 270, 518, 600, 668, 700
TasI AATT 5 cut(s) 93, 230, 352, 398, 430
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 1 cut(s) 621
Tru1I TTAA 1 cut(s) 588
Tru9I TTAA 1 cut(s) 588
TscAI CASTG 4 cut(s) 367, 546, 653, 659
TseFI GTSAC 3 cut(s) 34, 217, 362
Tsp45I GTSAC 3 cut(s) 34, 217, 362
TspDTI ATGAA 4 cut(s) 38, 426, 486, 578
TspGWI ACGGA 1 cut(s) 497
TspRI CASTG 4 cut(s) 367, 546, 653, 659
Tth111I GACNNNGTC 1 cut(s) 500
Van91I CCANNNNNTGG 1 cut(s) 583
VpaK11BI GGWCC 1 cut(s) 265
XagI CCTNNNNNAGG 1 cut(s) 50
XapI RAATTY 1 cut(s) 352
XceI RCATGY 2 cut(s) 287, 764
XmiI GTMKAC 2 cut(s) 518, 700
XspI CTAG 1 cut(s) 527
Zsp2I ATGCAT 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.