Rmu_sc0005659.1_g000006

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005659.1
OG0000176
Physical Location & Seq
Forward (+)
27963 .. 28358
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005659.1_g000006.1.cds

Sequence Viewer

Length: 396 bp
atgcttactttccgcgaaccaaacgaggccttagtggaaagagaggcctatgatcaagtcgcgaccttggaaattgtcaacgaggagttttctgaccaggaagaggatgaagaggagatccgactagctctggcagcattggatgacacacctctgagggtcagggaccccattgagaaggtcaagcttggaaccactgatgagcctatggaagtggctatcagtgcttacttagagcctagcgagaaacaaaggctcatcgacttattaatggaatacaaggactgcatcgcagaaaaatatgaagacatgctcagcctgtccctggacttggtatgccatcagctgccaacacttcctgacaagaggcctgtgaatgggaaccacgaagaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

131

Amino Acids

15.1

Weight (kDa)

4.24

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 15, 62
AciI CCGC 1 cut(s) 13
AclWI GGATC 1 cut(s) 112
AfiI CCNNNNNNNGG 4 cut(s) 103, 325, 331, 377
AjnI CCWGG 2 cut(s) 96, 324
AluBI AGCT 3 cut(s) 128, 187, 346
AluI AGCT 3 cut(s) 128, 187, 346
AlwI GGATC 1 cut(s) 112
AoxI GGCC 3 cut(s) 27, 45, 368
ApeKI GCWGC 2 cut(s) 134, 346
AseI ATTAAT 1 cut(s) 269
AspS9I GGNCC 1 cut(s) 166
AvaII GGWCC 1 cut(s) 166
BbsI GAAGAC 1 cut(s) 312
BbvI GCAGC 2 cut(s) 146, 333
BccI CCATC 1 cut(s) 348
BciT130I CCWGG 2 cut(s) 98, 326
BclI TGATCA 1 cut(s) 52
BfaI CTAG 2 cut(s) 125, 240
BisI GCNGC 2 cut(s) 135, 347
BlpI GCTNAGC 1 cut(s) 314
BlsI GCNGC 2 cut(s) 136, 348
Bme1390I CCNGG 2 cut(s) 98, 326
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 4 cut(s) 167, 168, 193, 383
BmrFI CCNGG 2 cut(s) 98, 326
BmsI GCATC 1 cut(s) 297
BpiI GAAGAC 1 cut(s) 312
Bpu1102I GCTNAGC 1 cut(s) 314
BsaJI CCNNGG 2 cut(s) 66, 324
Bsc4I CCNNNNNNNGG 4 cut(s) 103, 325, 331, 377
BseBI CCWGG 2 cut(s) 98, 326
BseDI CCNNGG 2 cut(s) 66, 324
BseGI GGATG 2 cut(s) 112, 148
BseLI CCNNNNNNNGG 4 cut(s) 103, 325, 331, 377
BseMII CTCAG 2 cut(s) 146, 328
BseRI GAGGAG 2 cut(s) 98, 128
BseXI GCAGC 2 cut(s) 146, 333
Bsh1236I CGCG 2 cut(s) 15, 62
BshFI GGCC 3 cut(s) 29, 47, 370
BslFI GGGAC 2 cut(s) 179, 307
BslI CCNNNNNNNGG 4 cut(s) 103, 325, 331, 377
BsmFI GGGAC 2 cut(s) 179, 307
BsnI GGCC 3 cut(s) 29, 47, 370
Bsp143I GATC 2 cut(s) 52, 117
Bsp1720I GCTNAGC 1 cut(s) 314
Bsp68I TCGCGA 1 cut(s) 62
BspACI CCGC 1 cut(s) 13
BspANI GGCC 3 cut(s) 29, 47, 370
BspCNI CTCAG 2 cut(s) 147, 327
BspFNI CGCG 2 cut(s) 15, 62
BspLI GGNNCC 4 cut(s) 167, 168, 193, 383
BspPI GGATC 1 cut(s) 112
BssECI CCNNGG 2 cut(s) 66, 324
BssMI GATC 2 cut(s) 52, 117
BssT1I CCWWGG 1 cut(s) 66
Bst2UI CCWGG 2 cut(s) 98, 326
Bst6I CTCTTC 2 cut(s) 96, 105
BstDEI CTNAG 4 cut(s) 31, 155, 232, 314
BstF5I GGATG 2 cut(s) 112, 148
BstFNI CGCG 2 cut(s) 15, 62
BstKTI GATC 2 cut(s) 55, 120
BstMBI GATC 2 cut(s) 52, 117
BstMWI GCNNNNNNNGC 2 cut(s) 134, 224
BstNI CCWGG 2 cut(s) 98, 326
BstNSI RCATGY 1 cut(s) 313
BstSCI CCNGG 2 cut(s) 96, 324
BstUI CGCG 2 cut(s) 15, 62
BstV1I GCAGC 2 cut(s) 146, 333
BstV2I GAAGAC 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 117
BstYI RGATCY 1 cut(s) 117
BsuRI GGCC 3 cut(s) 29, 47, 370
BtgZI GCGATG 1 cut(s) 274
BtsCI GGATG 2 cut(s) 112, 148
BtsIMutI CAGTG 2 cut(s) 195, 229
BtuMI TCGCGA 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 166
CviAII CATG 1 cut(s) 310
DdeI CTNAG 4 cut(s) 31, 155, 232, 314
DpnI GATC 2 cut(s) 54, 119
DpnII GATC 2 cut(s) 52, 117
Eam1104I CTCTTC 2 cut(s) 96, 105
EarI CTCTTC 2 cut(s) 96, 105
Eco130I CCWWGG 1 cut(s) 66
Eco147I AGGCCT 3 cut(s) 29, 47, 370
Eco47I GGWCC 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 166
EcoRII CCWGG 2 cut(s) 96, 324
EcoT14I CCWWGG 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 1 cut(s) 313
FaiI YATR 5 cut(s) 51, 209, 303, 311, 337
FaqI GGGAC 2 cut(s) 179, 307
FatI CATG 1 cut(s) 309
FbaI TGATCA 1 cut(s) 52
Fnu4HI GCNGC 2 cut(s) 135, 347
FokI GGATG 2 cut(s) 119, 155
Fsp4HI GCNGC 2 cut(s) 135, 347
FspBI CTAG 2 cut(s) 125, 240
GluI GCNGC 2 cut(s) 135, 347
HaeIII GGCC 3 cut(s) 29, 47, 370
Hin1II CATG 1 cut(s) 313
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HindIII AAGCTT 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 3 cut(s) 94, 122, 156
Hpy188III TCNNGA 2 cut(s) 61, 359
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 1 cut(s) 172
HpyCH4V TGCA 1 cut(s) 288
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 224
HpyF3I CTNAG 4 cut(s) 31, 155, 232, 314
Hsp92II CATG 1 cut(s) 313
KflI GGGWCCC 1 cut(s) 166
Ksp22I TGATCA 1 cut(s) 52
Kzo9I GATC 2 cut(s) 52, 117
LpnPI CCDG 9 cut(s) 83, 110, 116, 148, 311, 332, 338, 372, 384
Lsp1109I GCAGC 2 cut(s) 146, 333
LweI GCATC 1 cut(s) 297
MaeI CTAG 2 cut(s) 125, 240
MalI GATC 2 cut(s) 54, 119
MboI GATC 2 cut(s) 52, 117
MboII GAAGA 3 cut(s) 113, 122, 317
MflI RGATCY 1 cut(s) 117
MluCI AATT 1 cut(s) 72
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 8 cut(s) 19, 37, 76, 97, 106, 150, 162, 360
MseI TTAA 1 cut(s) 269
MspA1I CMGCKG 1 cut(s) 346
MspR9I CCNGG 2 cut(s) 98, 326
MvaI CCWGG 2 cut(s) 98, 326
MvnI CGCG 2 cut(s) 15, 62
MwoI GCNNNNNNNGC 2 cut(s) 134, 224
NdeII GATC 2 cut(s) 52, 117
NlaIII CATG 1 cut(s) 313
NlaIV GGNNCC 4 cut(s) 167, 168, 193, 383
NruI TCGCGA 1 cut(s) 62
NspI RCATGY 1 cut(s) 313
PceI AGGCCT 3 cut(s) 29, 47, 370
PkrI GCNGC 2 cut(s) 136, 348
PpuMI RGGWCCY 1 cut(s) 166
PshBI ATTAAT 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 166
Psp6I CCWGG 2 cut(s) 96, 324
PspGI CCWGG 2 cut(s) 96, 324
PspN4I GGNNCC 4 cut(s) 167, 168, 193, 383
PspPI GGNCC 1 cut(s) 166
PspPPI RGGWCCY 1 cut(s) 166
PsuI RGATCY 1 cut(s) 117
PvuII CAGCTG 1 cut(s) 346
RruI TCGCGA 1 cut(s) 62
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 2 cut(s) 135, 347
Sau3AI GATC 2 cut(s) 52, 117
Sau96I GGNCC 1 cut(s) 166
ScrFI CCNGG 2 cut(s) 98, 326
SetI ASST 6 cut(s) 68, 130, 154, 183, 189, 348
SfaNI GCATC 1 cut(s) 297
SinI GGWCC 1 cut(s) 166
Sse9I AATT 1 cut(s) 72
SseBI AGGCCT 3 cut(s) 29, 47, 370
SsiI CCGC 1 cut(s) 13
SspMI CTAG 2 cut(s) 125, 240
StuI AGGCCT 3 cut(s) 29, 47, 370
StyD4I CCNGG 2 cut(s) 96, 324
StyI CCWWGG 1 cut(s) 66
TaqI TCGA 1 cut(s) 261
TasI AATT 1 cut(s) 72
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TscAI CASTG 2 cut(s) 202, 229
TseI GCWGC 2 cut(s) 134, 346
TspDTI ATGAA 2 cut(s) 123, 318
TspRI CASTG 2 cut(s) 202, 229
VpaK11BI GGWCC 1 cut(s) 166
VspI ATTAAT 1 cut(s) 269
XceI RCATGY 1 cut(s) 313
XspI CTAG 2 cut(s) 125, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.