Rroxscaffold_7G00199370

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000176
Physical Location & Seq
Forward (+)
45900147 .. 45900557
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00199370.1

Sequence Viewer

Length: 411 bp
ATGGATCACGACCTCGGGGAGGAAGAGGTAGCGGCCTTTCATTCTTTGTATGATAGATTGTCTTCATATTTGATCAAAAAAGAGGCCTATGCACAAGTAGCTACATTGGAATACATCGACCAAGAATTCTCCGATCGGAGGAGGAAGAAGACCTATCCAATTGGCACCAGCGGCATTGGATGTACAACGCCAAAGGTTAGAGATCCTACAAAAAAGGTAAATTTGGGCGGTGAGGTGAAGCCAATGGAAGTGGCAATAAGCACAAAATTAGAGCCTAATGAAAAACAGGGCTCATATATTTATTGCGGGAATATAAGGATTGTTTCGAGGAGAAATATGAAGATATGCCTGGATTATCTCCCGACTTGGTCTGCCATAAACTACCGACTATCCCGGATCAAAATCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

136

Amino Acids

15.65

Weight (kDa)

9.24

Isoelectric Point (pI)

37.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 164
AciI CCGC 4 cut(s) 32, 171, 228, 306
AclWI GGATC 3 cut(s) 12, 197, 404
AcsI RAATTY 2 cut(s) 125, 220
AfaI GTAC 1 cut(s) 184
AfiI CCNNNNNNNGG 2 cut(s) 19, 138
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
AlwI GGATC 3 cut(s) 12, 197, 404
Ama87I CYCGRG 1 cut(s) 14
AoxI GGCC 2 cut(s) 33, 84
ApoI RAATTY 2 cut(s) 125, 220
AsuC2I CCSGG 1 cut(s) 394
AsuHPI GGTGA 2 cut(s) 242, 247
AvaI CYCGRG 1 cut(s) 14
BanI GGYRCC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 293
BbsI GAAGAC 2 cut(s) 54, 155
BciT130I CCWGG 1 cut(s) 350
BclI TGATCA 1 cut(s) 72
BcnI CCSGG 1 cut(s) 394
BisI GCNGC 2 cut(s) 33, 172
BlsI GCNGC 2 cut(s) 34, 173
Bme1390I CCNGG 2 cut(s) 350, 394
BmeT110I CYCGRG 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 2 cut(s) 350, 394
BpiI GAAGAC 2 cut(s) 54, 155
BpuMI CCSGG 1 cut(s) 394
BsaBI GATNNNNATC 1 cut(s) 401
BsaJI CCNNGG 1 cut(s) 13
BsaWI WCCGGW 1 cut(s) 405
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 138
Bse8I GATNNNNATC 1 cut(s) 401
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 1 cut(s) 185
BseJI GATNNNNATC 1 cut(s) 401
BseLI CCNNNNNNNGG 2 cut(s) 19, 138
BseRI GAGGAG 2 cut(s) 154, 343
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 2 cut(s) 35, 86
BshNI GGYRCC 1 cut(s) 164
BsiEI CGRYCG 1 cut(s) 136
BsiHKCI CYCGRG 1 cut(s) 14
BsiSI CCGG 2 cut(s) 394, 406
BslI CCNNNNNNNGG 2 cut(s) 19, 138
BsnI GGCC 2 cut(s) 35, 86
BsoBI CYCGRG 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 293
Bsp1407I TGTACA 1 cut(s) 182
Bsp143I GATC 5 cut(s) 4, 72, 133, 202, 396
BspACI CCGC 4 cut(s) 32, 171, 228, 306
BspANI GGCC 2 cut(s) 35, 86
BspLI GGNNCC 1 cut(s) 166
BspPI GGATC 3 cut(s) 12, 197, 404
BspT107I GGYRCC 1 cut(s) 164
BsrGI TGTACA 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 5 cut(s) 4, 72, 133, 202, 396
Bst2UI CCWGG 1 cut(s) 350
Bst6I CTCTTC 1 cut(s) 18
BstAUI TGTACA 1 cut(s) 182
BstENI CCTNNNNNAGG 1 cut(s) 17
BstF5I GGATG 1 cut(s) 185
BstKTI GATC 5 cut(s) 7, 75, 136, 205, 399
BstMBI GATC 5 cut(s) 4, 72, 133, 202, 396
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 2 cut(s) 98, 171
BstNI CCWGG 1 cut(s) 350
BstSCI CCNGG 2 cut(s) 348, 392
BstV2I GAAGAC 2 cut(s) 54, 155
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BsuRI GGCC 2 cut(s) 35, 86
BtsCI GGATG 1 cut(s) 185
Csp6I GTAC 1 cut(s) 183
CspCI CAANNNNNGTGG 2 cut(s) 231, 266
CviJI RGCY 6 cut(s) 35, 86, 101, 241, 274, 291
CviKI_1 RGCY 6 cut(s) 35, 86, 101, 241, 274, 291
CviQI GTAC 1 cut(s) 183
DpnI GATC 5 cut(s) 6, 74, 135, 204, 398
DpnII GATC 5 cut(s) 4, 72, 133, 202, 396
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Eco147I AGGCCT 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 293
Eco88I CYCGRG 1 cut(s) 14
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoRI GAATTC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 293
FaiI YATR 9 cut(s) 51, 67, 90, 295, 297, 314, 338, 346, 377
FauI CCCGC 1 cut(s) 299
FbaI TGATCA 1 cut(s) 72
Fnu4HI GCNGC 2 cut(s) 33, 172
FokI GGATG 1 cut(s) 192
FriOI GRGCYC 1 cut(s) 293
Fsp4HI GCNGC 2 cut(s) 33, 172
GluI GCNGC 2 cut(s) 33, 172
HaeIII GGCC 2 cut(s) 35, 86
HapII CCGG 2 cut(s) 394, 406
HpaII CCGG 2 cut(s) 394, 406
HphI GGTGA 2 cut(s) 242, 247
Hpy188I TCNGA 2 cut(s) 133, 138
Hpy188III TCNNGA 2 cut(s) 8, 361
HpyCH4V TGCA 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 171
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 5 cut(s) 4, 72, 133, 202, 396
LpnPI CCDG 5 cut(s) 181, 272, 335, 362, 407
MalI GATC 5 cut(s) 6, 74, 135, 204, 398
MboI GATC 5 cut(s) 4, 72, 133, 202, 396
MboII GAAGA 5 cut(s) 35, 54, 157, 160, 352
MfeI CAATTG 1 cut(s) 159
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 293
MluCI AATT 4 cut(s) 125, 159, 220, 266
MnlI CCTC 8 cut(s) 13, 19, 23, 76, 132, 135, 226, 321
MspA1I CMGCKG 1 cut(s) 171
MspI CCGG 2 cut(s) 394, 406
MspR9I CCNGG 2 cut(s) 350, 394
MunI CAATTG 1 cut(s) 159
MvaI CCWGG 1 cut(s) 350
MwoI GCNNNNNNNGC 2 cut(s) 98, 171
NciI CCSGG 1 cut(s) 394
NdeII GATC 5 cut(s) 4, 72, 133, 202, 396
NlaIV GGNNCC 1 cut(s) 166
PceI AGGCCT 1 cut(s) 86
PflFI GACNNNGTC 1 cut(s) 367
PfoI TCCNGGA 1 cut(s) 392
PkrI GCNGC 2 cut(s) 34, 173
Ple19I CGATCG 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 348
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 1 cut(s) 166
PsuI RGATCY 1 cut(s) 202
PsyI GACNNNGTC 1 cut(s) 367
PvuI CGATCG 1 cut(s) 136
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
SatI GCNGC 2 cut(s) 33, 172
Sau3AI GATC 5 cut(s) 4, 72, 133, 202, 396
ScrFI CCNGG 2 cut(s) 350, 394
SduI GDGCHC 1 cut(s) 293
SetI ASST 7 cut(s) 15, 30, 103, 155, 198, 219, 237
Sse9I AATT 4 cut(s) 125, 159, 220, 266
SseBI AGGCCT 1 cut(s) 86
SsiI CCGC 4 cut(s) 32, 171, 228, 306
StuI AGGCCT 1 cut(s) 86
StyD4I CCNGG 2 cut(s) 348, 392
TaqI TCGA 2 cut(s) 117, 326
TasI AATT 4 cut(s) 125, 159, 220, 266
TatI WGTACW 1 cut(s) 182
TauI GCSGC 2 cut(s) 35, 174
TspDTI ATGAA 4 cut(s) 29, 54, 294, 353
Tth111I GACNNNGTC 1 cut(s) 367
XagI CCTNNNNNAGG 1 cut(s) 17
XapI RAATTY 2 cut(s) 125, 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.