Rmu_sc0000461.1_g000002

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000461.1
Physical Location & Seq
Reverse (-)
211 .. 579
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000461.1_g000002.1.cds

Sequence Viewer

Length: 369 bp
atgaaggaagaggtagaggccttccattctttgtatgagagcctatcctcatacttggtggaaacagaggcctatgatcgagtcgcgaccttagaaattgttaatgaagagttcacggatcaagaagaggaggaagaagagattcagctagctccagcggcattggatgacacacctccgaaggttagggaccctactgaaaaggtcaatctgggaataactgatgagcctatagaagtggctatcagcacttacttagagcctagcgagaaacagaggctcgttgaattattgctggaattcaaggactgcttcacggaaaaatacgaggacatgccaagcctatcaccagacttggtatgccactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

122

Amino Acids

14.03

Weight (kDa)

4.05

Isoelectric Point (pI)

65.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 86
AciI CCGC 1 cut(s) 158
AclWI GGATC 1 cut(s) 126
AcsI RAATTY 1 cut(s) 299
AgsI TTSAA 2 cut(s) 287, 304
AluBI AGCT 2 cut(s) 148, 152
AluI AGCT 2 cut(s) 148, 152
AlwI GGATC 1 cut(s) 126
AoxI GGCC 2 cut(s) 18, 69
ApoI RAATTY 1 cut(s) 299
Asp700I GAANNNNTTC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 339
AsuNHI GCTAGC 1 cut(s) 148
AvaII GGWCC 1 cut(s) 190
BfaI CTAG 2 cut(s) 149, 264
BfmI CTRYAG 1 cut(s) 231
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 2 cut(s) 191, 192
BmtI GCTAGC 1 cut(s) 152
BpmI CTGGAG 1 cut(s) 138
BseGI GGATG 1 cut(s) 172
BseRI GAGGAG 1 cut(s) 143
Bsh1236I CGCG 1 cut(s) 86
BshFI GGCC 2 cut(s) 20, 71
BslFI GGGAC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 2 cut(s) 20, 71
Bsp143I GATC 2 cut(s) 76, 118
Bsp68I TCGCGA 1 cut(s) 86
BspACI CCGC 1 cut(s) 158
BspANI GGCC 2 cut(s) 20, 71
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 2 cut(s) 191, 192
BspOI GCTAGC 1 cut(s) 152
BspPI GGATC 1 cut(s) 126
BssMI GATC 2 cut(s) 76, 118
Bst6I CTCTTC 4 cut(s) 3, 102, 120, 132
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 2 cut(s) 91, 256
BstF5I GGATG 1 cut(s) 172
BstFNI CGCG 1 cut(s) 86
BstKTI GATC 2 cut(s) 79, 121
BstMBI GATC 2 cut(s) 76, 118
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 337
BstSFI CTRYAG 1 cut(s) 231
BstUI CGCG 1 cut(s) 86
BsuRI GGCC 2 cut(s) 20, 71
BtsCI GGATG 1 cut(s) 172
BtuMI TCGCGA 1 cut(s) 86
Cac8I GCNNGC 1 cut(s) 150
Cfr13I GGNCC 1 cut(s) 190
CviAII CATG 1 cut(s) 334
DdeI CTNAG 2 cut(s) 91, 256
DpnI GATC 2 cut(s) 78, 120
DpnII GATC 2 cut(s) 76, 118
Eam1104I CTCTTC 4 cut(s) 3, 102, 120, 132
EarI CTCTTC 4 cut(s) 3, 102, 120, 132
Eco147I AGGCCT 2 cut(s) 20, 71
Eco47I GGWCC 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 190
EcoRI GAATTC 1 cut(s) 299
FaeI CATG 1 cut(s) 337
FaiI YATR 6 cut(s) 36, 52, 75, 233, 335, 361
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FaqI GGGAC 1 cut(s) 203
FatI CATG 1 cut(s) 333
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 2 cut(s) 149, 264
GluI GCNGC 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 138
HaeIII GGCC 2 cut(s) 20, 71
Hin1II CATG 1 cut(s) 337
HinfI GANTC 2 cut(s) 81, 142
HphI GGTGA 1 cut(s) 339
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 1 cut(s) 180
Hpy188III TCNNGA 2 cut(s) 85, 122
Hpy8I GTNNAC 1 cut(s) 114
HpyAV CCTTC 2 cut(s) 31, 175
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 2 cut(s) 91, 256
Hsp92II CATG 1 cut(s) 337
KflI GGGWCCC 1 cut(s) 190
Kzo9I GATC 2 cut(s) 76, 118
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 4 cut(s) 168, 197, 281, 363
MaeI CTAG 2 cut(s) 149, 264
MalI GATC 2 cut(s) 78, 120
MboI GATC 2 cut(s) 76, 118
MboII GAAGA 5 cut(s) 20, 119, 137, 146, 149
MluCI AATT 3 cut(s) 96, 287, 299
MlyI GAGTC 1 cut(s) 90
MnlI CCTC 9 cut(s) 4, 10, 58, 61, 121, 124, 186, 270, 322
MroXI GAANNNNTTC 1 cut(s) 141
MseI TTAA 1 cut(s) 102
MspA1I CMGCKG 1 cut(s) 158
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 2 cut(s) 76, 118
NheI GCTAGC 1 cut(s) 148
NlaIII CATG 1 cut(s) 337
NlaIV GGNNCC 2 cut(s) 191, 192
NruI TCGCGA 1 cut(s) 86
NspI RCATGY 1 cut(s) 337
PceI AGGCCT 2 cut(s) 20, 71
PdmI GAANNNNTTC 1 cut(s) 141
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 1 cut(s) 160
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PpuMI RGGWCCY 1 cut(s) 190
Psp5II RGGWCCY 1 cut(s) 190
PspN4I GGNNCC 2 cut(s) 191, 192
PspPI GGNCC 1 cut(s) 190
PspPPI RGGWCCY 1 cut(s) 190
RruI TCGCGA 1 cut(s) 86
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 2 cut(s) 76, 118
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 1 cut(s) 90
SetI ASST 7 cut(s) 15, 92, 150, 154, 178, 186, 207
SfcI CTRYAG 1 cut(s) 231
SinI GGWCC 1 cut(s) 190
Sse9I AATT 3 cut(s) 96, 287, 299
SseBI AGGCCT 2 cut(s) 20, 71
SsiI CCGC 1 cut(s) 158
SspMI CTAG 2 cut(s) 149, 264
StuI AGGCCT 2 cut(s) 20, 71
TaqI TCGA 1 cut(s) 79
TasI AATT 3 cut(s) 96, 287, 299
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TspDTI ATGAA 2 cut(s) 17, 120
TspGWI ACGGA 2 cut(s) 131, 332
VpaK11BI GGWCC 1 cut(s) 190
XapI RAATTY 1 cut(s) 299
XceI RCATGY 1 cut(s) 337
XmnI GAANNNNTTC 1 cut(s) 141
XspI CTAG 2 cut(s) 149, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.