Rmu_sc0002532.1_g000023

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002532.1
OG0000176
Physical Location & Seq
Reverse (-)
122498 .. 122947
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002532.1_g000023.1.cds

Sequence Viewer

Length: 450 bp
atggattacgaccttccaaaggaagggatagagtccttccattctttgtacgaacggctatcctcgtacttggtggaaaaagagacctatgaccgagtcacgactttagaaatagttaatgaggagctctctgaccatgaagaggaagaagagaaaattcaactcgcccctgcggcattggatgacacacctccgaaggttagggaccctatcgacaaggtcaatctgggaacaactgacgagcccattgaagtggctaccaacacttatttagagcctagcgataagcagaggctcatcgacttactgcaggaatacaaggactgcttcgcggaaaaatatgaaaatatgcccggcctgtcactagacttggtatgccatcagctgccaacgctccctgacaagaggcttgtgaagcaagagctgcgaagaatgaactcggaaacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

149

Amino Acids

17.32

Weight (kDa)

4.42

Isoelectric Point (pI)

56.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 332
AciI CCGC 2 cut(s) 173, 332
AcsI RAATTY 1 cut(s) 156
AfaI GTAC 2 cut(s) 50, 68
AfiI CCNNNNNNNGG 3 cut(s) 19, 23, 142
AgsI TTSAA 2 cut(s) 161, 251
AluBI AGCT 3 cut(s) 127, 385, 424
AluI AGCT 3 cut(s) 127, 385, 424
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 1 cut(s) 77
AoxI GGCC 1 cut(s) 355
ApeKI GCWGC 2 cut(s) 385, 424
ApoI RAATTY 1 cut(s) 156
AspS9I GGNCC 1 cut(s) 205
AsuC2I CCSGG 1 cut(s) 354
AvaII GGWCC 1 cut(s) 205
BanII GRGCYC 2 cut(s) 129, 246
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 2 cut(s) 372, 411
BccI CCATC 1 cut(s) 387
BceAI ACGGC 1 cut(s) 71
BcnI CCSGG 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 2 cut(s) 279, 365
BfmI CTRYAG 1 cut(s) 308
BglI GCCNNNNNGGC 1 cut(s) 173
BisI GCNGC 3 cut(s) 174, 386, 425
BlsI GCNGC 3 cut(s) 175, 387, 426
Bme1390I CCNGG 1 cut(s) 354
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 2 cut(s) 206, 207
BmrFI CCNGG 1 cut(s) 354
BplI GAGNNNNNCTC 2 cut(s) 113, 145
BpuMI CCSGG 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 77
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 23, 142
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 3 cut(s) 19, 23, 142
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 2 cut(s) 372, 411
Bsh1236I CGCG 1 cut(s) 332
BshFI GGCC 1 cut(s) 357
BsiHKAI GWGCWC 1 cut(s) 129
BsiSI CCGG 1 cut(s) 354
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 3 cut(s) 19, 23, 142
BsmAI GTCTC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 1 cut(s) 357
Bso31I GGTCTC 1 cut(s) 77
Bsp1286I GDGCHC 2 cut(s) 129, 246
BspACI CCGC 2 cut(s) 173, 332
BspANI GGCC 1 cut(s) 357
BspFNI CGCG 1 cut(s) 332
BspLI GGNNCC 2 cut(s) 206, 207
BspMAI CTGCAG 1 cut(s) 312
BspTNI GGTCTC 1 cut(s) 77
Bst6I CTCTTC 2 cut(s) 135, 144
BstAPI GCANNNNNTGC 1 cut(s) 424
BstENI CCTNNNNNAGG 1 cut(s) 17
BstF5I GGATG 1 cut(s) 187
BstFNI CGCG 1 cut(s) 332
BstMAI GTCTC 1 cut(s) 77
BstMWI GCNNNNNNNGC 4 cut(s) 173, 391, 415, 424
BstSCI CCNGG 1 cut(s) 352
BstSFI CTRYAG 1 cut(s) 308
BstUI CGCG 1 cut(s) 332
BstV1I GCAGC 2 cut(s) 372, 411
BstXI CCANNNNNNTGG 1 cut(s) 253
BsuRI GGCC 1 cut(s) 357
BtsCI GGATG 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 205
Csp6I GTAC 2 cut(s) 49, 67
CviAII CATG 1 cut(s) 137
CviQI GTAC 2 cut(s) 49, 67
Eam1104I CTCTTC 2 cut(s) 135, 144
EarI CTCTTC 2 cut(s) 135, 144
Ecl136II GAGCTC 1 cut(s) 127
Eco24I GRGCYC 2 cut(s) 129, 246
Eco31I GGTCTC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 205
Eco53kI GAGCTC 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 127
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoO109I RGGNCCY 1 cut(s) 205
EcoT38I GRGCYC 2 cut(s) 129, 246
FaeI CATG 1 cut(s) 140
FaiI YATR 5 cut(s) 90, 138, 342, 350, 376
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FaqI GGGAC 1 cut(s) 218
FatI CATG 1 cut(s) 136
Fnu4HI GCNGC 3 cut(s) 174, 386, 425
FokI GGATG 1 cut(s) 194
FriOI GRGCYC 2 cut(s) 129, 246
Fsp4HI GCNGC 3 cut(s) 174, 386, 425
FspBI CTAG 2 cut(s) 279, 365
GluI GCNGC 3 cut(s) 174, 386, 425
HaeIII GGCC 1 cut(s) 357
HapII CCGG 1 cut(s) 354
Hin1II CATG 1 cut(s) 140
HinfI GANTC 2 cut(s) 32, 96
HpaII CCGG 1 cut(s) 354
Hpy188I TCNGA 3 cut(s) 133, 195, 442
Hpy188III TCNNGA 1 cut(s) 100
HpyAV CCTTC 4 cut(s) 17, 23, 46, 190
HpyCH4V TGCA 1 cut(s) 310
HpyF10VI GCNNNNNNNGC 4 cut(s) 173, 391, 415, 424
Hsp92II CATG 1 cut(s) 140
KflI GGGWCCC 1 cut(s) 205
LmnI GCTCC 2 cut(s) 124, 399
LpnPI CCDG 6 cut(s) 183, 212, 296, 367, 371, 411
Lsp1109I GCAGC 2 cut(s) 372, 411
MaeI CTAG 2 cut(s) 279, 365
MaeIII GTNAC 2 cut(s) 97, 360
MboII GAAGA 4 cut(s) 152, 158, 161, 441
MhlI GDGCHC 2 cut(s) 129, 246
MluCI AATT 1 cut(s) 156
MlyI GAGTC 2 cut(s) 41, 105
MnlI CCTC 6 cut(s) 73, 115, 136, 201, 285, 399
MseI TTAA 1 cut(s) 117
MslI CAYNNNNRTG 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 385
MspI CCGG 1 cut(s) 354
MspR9I CCNGG 1 cut(s) 354
MvnI CGCG 1 cut(s) 332
MwoI GCNNNNNNNGC 4 cut(s) 173, 391, 415, 424
NciI CCSGG 1 cut(s) 354
NlaIII CATG 1 cut(s) 140
NlaIV GGNNCC 2 cut(s) 206, 207
NmuCI GTSAC 2 cut(s) 97, 360
PflFI GACNNNGTC 2 cut(s) 95, 218
PkrI GCNGC 3 cut(s) 175, 387, 426
PleI GAGTC 2 cut(s) 40, 104
PpsI GAGTC 2 cut(s) 40, 104
PpuMI RGGWCCY 1 cut(s) 205
Psp124BI GAGCTC 1 cut(s) 129
Psp5II RGGWCCY 1 cut(s) 205
PspN4I GGNNCC 2 cut(s) 206, 207
PspPI GGNCC 1 cut(s) 205
PspPPI RGGWCCY 1 cut(s) 205
PstI CTGCAG 1 cut(s) 312
PsyI GACNNNGTC 2 cut(s) 95, 218
PvuII CAGCTG 1 cut(s) 385
RsaI GTAC 2 cut(s) 50, 68
RsaNI GTAC 2 cut(s) 49, 67
RseI CAYNNNNRTG 1 cut(s) 251
SacI GAGCTC 1 cut(s) 129
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 3 cut(s) 174, 386, 425
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 2 cut(s) 41, 105
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 2 cut(s) 129, 246
SetI ASST 9 cut(s) 15, 89, 129, 193, 201, 222, 387, 426, 449
SfcI CTRYAG 1 cut(s) 308
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 251
Sse9I AATT 1 cut(s) 156
SsiI CCGC 2 cut(s) 173, 332
SspMI CTAG 2 cut(s) 279, 365
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 352
TaqI TCGA 2 cut(s) 213, 300
TaqII GACCGA 1 cut(s) 108
TasI AATT 1 cut(s) 156
TauI GCSGC 1 cut(s) 176
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TseFI GTSAC 2 cut(s) 97, 360
TseI GCWGC 2 cut(s) 385, 424
Tsp45I GTSAC 2 cut(s) 97, 360
TspDTI ATGAA 3 cut(s) 153, 357, 449
Tth111I GACNNNGTC 2 cut(s) 95, 218
VpaK11BI GGWCC 1 cut(s) 205
XagI CCTNNNNNAGG 1 cut(s) 17
XapI RAATTY 1 cut(s) 156
XspI CTAG 2 cut(s) 279, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.