Rroxscaffold_2G00077380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000176
Physical Location & Seq
Reverse (-)
920868 .. 921308
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00077380.1

Sequence Viewer

Length: 441 bp
ATGGAGGCAGCCGCGAGCGAAACTAAGATATGGGTTTCGCAAACCAACACCGACCATAGTGCGGCATATGAGGCCATTGTACATCACTGCGGATGTGAACGGCACTATGGTAAGCAAGATCATGGTAGATACCGGCGTCGCATCAACGTCTTGACCACCGTAACCATGCGGTTGCTAGGAATCAAGAAAGAAAAGATCCAATCCACATCCCCGACACCGAAGAACTTCGCAGGGACCGTGACCAAAACATTGGGGTTGATCTTTCTACAAGTCAAGGTGGGACCAGCCGAAGGGTTTACGCTTTCTTCTTCACCGACCGTGACGCAAAGATACGGTGCAGTGCAGGCCGTGATTGGATACACGGGAGTTATTGTGTCAAATCCAGCCTTCATCAGAGCTAATCATGTTGGACGGGGTCGCGGACAAGGCGACAACGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

15.84

Weight (kDa)

9.95

Isoelectric Point (pI)

21.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 14, 420
AciI CCGC 5 cut(s) 12, 62, 90, 169, 420
AclWI GGATC 1 cut(s) 190
AcyI GRCGYC 1 cut(s) 136
AfaI GTAC 1 cut(s) 81
AfiI CCNNNNNNNGG 2 cut(s) 61, 290
AluBI AGCT 1 cut(s) 398
AluI AGCT 1 cut(s) 398
AlwI GGATC 1 cut(s) 190
AoxI GGCC 2 cut(s) 72, 345
ApeKI GCWGC 1 cut(s) 8
Asp700I GAANNNNTTC 1 cut(s) 224
AspS9I GGNCC 2 cut(s) 234, 281
AsuHPI GGTGA 1 cut(s) 303
AvaII GGWCC 2 cut(s) 234, 281
BaeI ACNNNNGTAYC 2 cut(s) 121, 154
BbvI GCAGC 1 cut(s) 20
BceAI ACGGC 2 cut(s) 116, 332
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BciVI GTATCC 1 cut(s) 350
BfaI CTAG 1 cut(s) 176
BfuI GTATCC 1 cut(s) 350
BisI GCNGC 3 cut(s) 9, 12, 63
BlsI GCNGC 3 cut(s) 10, 13, 64
Bme18I GGWCC 2 cut(s) 234, 281
BmgT120I GGNCC 2 cut(s) 234, 281
BmiI GGNNCC 2 cut(s) 235, 282
BmsI GCATC 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 136
BsaXI ACNNNNNCTCC 2 cut(s) 357, 387
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 290
Bse118I RCCGGY 1 cut(s) 132
BseGI GGATG 2 cut(s) 98, 206
BseLI CCNNNNNNNGG 2 cut(s) 61, 290
BseXI GCAGC 1 cut(s) 20
BsgI GTGCAG 2 cut(s) 357, 362
Bsh1236I CGCG 2 cut(s) 14, 420
Bsh1285I CGRYCG 1 cut(s) 318
BshFI GGCC 2 cut(s) 74, 347
BsiEI CGRYCG 1 cut(s) 318
BsiSI CCGG 1 cut(s) 133
BslFI GGGAC 2 cut(s) 247, 294
BslI CCNNNNNNNGG 2 cut(s) 61, 290
BsmFI GGGAC 2 cut(s) 247, 294
BsnI GGCC 2 cut(s) 74, 347
Bsp1407I TGTACA 1 cut(s) 79
Bsp143I GATC 3 cut(s) 118, 195, 258
BspACI CCGC 5 cut(s) 12, 62, 90, 169, 420
BspANI GGCC 2 cut(s) 74, 347
BspFNI CGCG 2 cut(s) 14, 420
BspLI GGNNCC 2 cut(s) 235, 282
BspPI GGATC 1 cut(s) 190
BsrFI RCCGGY 1 cut(s) 132
BsrGI TGTACA 1 cut(s) 79
BssAI RCCGGY 1 cut(s) 132
BssMI GATC 3 cut(s) 118, 195, 258
BssNI GRCGYC 1 cut(s) 136
Bst4CI ACNGT 5 cut(s) 160, 238, 319, 335, 437
BstACI GRCGYC 1 cut(s) 136
BstAUI TGTACA 1 cut(s) 79
BstC8I GCNNGC 2 cut(s) 16, 345
BstDEI CTNAG 1 cut(s) 24
BstF5I GGATG 2 cut(s) 98, 206
BstFNI CGCG 2 cut(s) 14, 420
BstKTI GATC 3 cut(s) 121, 198, 261
BstMBI GATC 3 cut(s) 118, 195, 258
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 3 cut(s) 71, 344, 426
BstUI CGCG 2 cut(s) 14, 420
BstV1I GCAGC 1 cut(s) 20
BstX2I RGATCY 1 cut(s) 195
BstXI CCANNNNNNTGG 1 cut(s) 250
BstYI RGATCY 1 cut(s) 195
BsuI GTATCC 1 cut(s) 350
BsuRI GGCC 2 cut(s) 74, 347
BtsCI GGATG 2 cut(s) 98, 206
BtsI GCAGTG 2 cut(s) 85, 345
BtsIMutI CAGTG 2 cut(s) 85, 345
Cac8I GCNNGC 2 cut(s) 16, 345
Cfr10I RCCGGY 1 cut(s) 132
Cfr13I GGNCC 2 cut(s) 234, 281
CseI GACGC 2 cut(s) 125, 331
Csp6I GTAC 1 cut(s) 80
CviAII CATG 3 cut(s) 122, 166, 404
CviJI RGCY 6 cut(s) 11, 74, 287, 347, 386, 398
CviKI_1 RGCY 6 cut(s) 11, 74, 287, 347, 386, 398
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 1 cut(s) 24
DpnI GATC 3 cut(s) 120, 197, 260
DpnII GATC 3 cut(s) 118, 195, 258
Eco47I GGWCC 2 cut(s) 234, 281
FaeI CATG 3 cut(s) 125, 169, 407
FaiI YATR 8 cut(s) 31, 57, 67, 69, 108, 123, 167, 405
FaqI GGGAC 2 cut(s) 247, 294
FatI CATG 3 cut(s) 121, 165, 403
FauNDI CATATG 1 cut(s) 67
Fnu4HI GCNGC 3 cut(s) 9, 12, 63
FokI GGATG 2 cut(s) 105, 193
Fsp4HI GCNGC 3 cut(s) 9, 12, 63
FspBI CTAG 1 cut(s) 176
GluI GCNGC 3 cut(s) 9, 12, 63
HaeIII GGCC 2 cut(s) 74, 347
HapII CCGG 1 cut(s) 133
HgaI GACGC 2 cut(s) 125, 331
Hin1I GRCGYC 1 cut(s) 136
Hin1II CATG 3 cut(s) 125, 169, 407
HinfI GANTC 1 cut(s) 180
HpaII CCGG 1 cut(s) 133
HphI GGTGA 1 cut(s) 303
Hpy166II GTNNAC 2 cut(s) 98, 297
Hpy188I TCNGA 1 cut(s) 395
Hpy188III TCNNGA 2 cut(s) 151, 184
Hpy8I GTNNAC 2 cut(s) 98, 297
Hpy99I CGWCG 1 cut(s) 141
HpyAV CCTTC 2 cut(s) 284, 397
HpyCH4III ACNGT 5 cut(s) 160, 238, 319, 335, 437
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 2 cut(s) 338, 343
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 344, 426
HpyF3I CTNAG 1 cut(s) 24
HpySE526I ACGT 1 cut(s) 147
Hsp92I GRCGYC 1 cut(s) 136
Hsp92II CATG 3 cut(s) 125, 169, 407
Kzo9I GATC 3 cut(s) 118, 195, 258
LpnPI CCDG 5 cut(s) 146, 216, 297, 329, 396
Lsp1109I GCAGC 1 cut(s) 20
LweI GCATC 1 cut(s) 150
MaeI CTAG 1 cut(s) 176
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 3 cut(s) 160, 238, 319
MalI GATC 3 cut(s) 120, 197, 260
MboI GATC 3 cut(s) 118, 195, 258
MboII GAAGA 3 cut(s) 232, 297, 300
MflI RGATCY 1 cut(s) 195
MmeI TCCRAC 1 cut(s) 388
MnlI CCTC 1 cut(s) 64
MroXI GAANNNNTTC 1 cut(s) 224
MseI TTAA 1 cut(s) 439
MspI CCGG 1 cut(s) 133
MvnI CGCG 2 cut(s) 14, 420
MwoI GCNNNNNNNGC 3 cut(s) 71, 344, 426
NdeI CATATG 1 cut(s) 67
NdeII GATC 3 cut(s) 118, 195, 258
NlaIII CATG 3 cut(s) 125, 169, 407
NlaIV GGNNCC 2 cut(s) 235, 282
NmuCI GTSAC 2 cut(s) 238, 319
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PdmI GAANNNNTTC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 180
PflFI GACNNNGTC 1 cut(s) 414
PkrI GCNGC 3 cut(s) 10, 13, 64
PspN4I GGNNCC 2 cut(s) 235, 282
PspPI GGNCC 2 cut(s) 234, 281
PsuI RGATCY 1 cut(s) 195
PsyI GACNNNGTC 1 cut(s) 414
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 439
SatI GCNGC 3 cut(s) 9, 12, 63
Sau3AI GATC 3 cut(s) 118, 195, 258
Sau96I GGNCC 2 cut(s) 234, 281
SetI ASST 3 cut(s) 150, 279, 400
SfaNI GCATC 1 cut(s) 150
SinI GGWCC 2 cut(s) 234, 281
SsiI CCGC 5 cut(s) 12, 62, 90, 169, 420
SspMI CTAG 1 cut(s) 176
TaaI ACNGT 5 cut(s) 160, 238, 319, 335, 437
TaiI ACGT 1 cut(s) 150
TatI WGTACW 1 cut(s) 79
TauI GCSGC 2 cut(s) 14, 65
TfiI GAWTC 1 cut(s) 180
Tru1I TTAA 1 cut(s) 439
Tru9I TTAA 1 cut(s) 439
TscAI CASTG 2 cut(s) 92, 345
TseFI GTSAC 2 cut(s) 238, 319
TseI GCWGC 1 cut(s) 8
Tsp45I GTSAC 2 cut(s) 238, 319
TspDTI ATGAA 1 cut(s) 379
TspRI CASTG 2 cut(s) 92, 345
Tth111I GACNNNGTC 1 cut(s) 414
VpaK11BI GGWCC 2 cut(s) 234, 281
XmnI GAANNNNTTC 1 cut(s) 224
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.