Rmu_sc0006300.1_g000007

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006300.1
OG0000176
Physical Location & Seq
Forward (+)
15718 .. 16167
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006300.1_g000007.1.cds

Sequence Viewer

Length: 450 bp
atggtggaaaaagaggcttatgatcgcattgcaaccttagaggtcgttaatgaagaactttctgacccggaggacgaagacgaagtccgcattcaacttgccccggcagcgctggacgatacacctcctaaagttagagaccctgctgagaaggtcaatctgggcacagcgagcgagcctatggaggtatctgtcagcgcgtacttagagcctagcgagaaacagaggctcactgcattgctactagagtttaaagattgctttgcggagaaatatgaagacatgcccggcctgtcgccagatttggtgtgttatcaactaccaactcttcctgacaagaggcccgtcaagcaggaacctcgacgaatgaattcggagacccagattctcgcaaaggaggaggtagaaaaaaatgcacaagtcgggtattataagggtcgccaagtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

149

Amino Acids

16.9

Weight (kDa)

4.49

Isoelectric Point (pI)

49.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 432
AccII CGCG 1 cut(s) 200
AciI CCGC 2 cut(s) 88, 266
AcsI RAATTY 1 cut(s) 370
AfaI GTAC 1 cut(s) 203
AfeI AGCGCT 1 cut(s) 111
AgsI TTSAA 1 cut(s) 95
Alw26I GTCTC 2 cut(s) 132, 371
Aor51HI AGCGCT 1 cut(s) 111
AoxI GGCC 2 cut(s) 289, 341
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 1 cut(s) 370
ArsI GACNNNNNNTTYG 2 cut(s) 69, 101
Asp700I GAANNNNTTC 1 cut(s) 370
AspLEI GCGC 2 cut(s) 112, 200
AspS9I GGNCC 1 cut(s) 342
AsuC2I CCSGG 3 cut(s) 68, 104, 288
BaeGI GKGCMC 1 cut(s) 167
BbsI GAAGAC 2 cut(s) 84, 285
BbvI GCAGC 1 cut(s) 119
BcgI CGANNNNNNTGC 2 cut(s) 341, 375
BcnI CCSGG 3 cut(s) 68, 104, 288
BcoDI GTCTC 2 cut(s) 132, 371
BfaI CTAG 2 cut(s) 213, 245
BfoI RGCGCY 1 cut(s) 113
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 3 cut(s) 68, 104, 288
BmgT120I GGNCC 1 cut(s) 342
BmiI GGNNCC 1 cut(s) 357
BmrFI CCNGG 3 cut(s) 68, 104, 288
BpiI GAAGAC 2 cut(s) 84, 285
BpuMI CCSGG 3 cut(s) 68, 104, 288
BsaI GGTCTC 2 cut(s) 132, 371
BsaJI CCNNGG 1 cut(s) 102
Bse3DI GCAATG 2 cut(s) 27, 236
BseDI CCNNGG 1 cut(s) 102
BseMI GCAATG 2 cut(s) 27, 236
BseMII CTCAG 1 cut(s) 138
BseRI GAGGAG 1 cut(s) 413
BseSI GKGCMC 1 cut(s) 167
BseXI GCAGC 1 cut(s) 119
Bsh1236I CGCG 1 cut(s) 200
BshFI GGCC 2 cut(s) 291, 343
BsiSI CCGG 3 cut(s) 68, 104, 288
BsmAI GTCTC 2 cut(s) 132, 371
BsmI GAATGC 1 cut(s) 90
BsnI GGCC 2 cut(s) 291, 343
Bso31I GGTCTC 2 cut(s) 132, 371
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 1 cut(s) 22
BspACI CCGC 2 cut(s) 88, 266
BspANI GGCC 2 cut(s) 291, 343
BspCNI CTCAG 1 cut(s) 139
BspFNI CGCG 1 cut(s) 200
BspLI GGNNCC 1 cut(s) 357
BspTNI GGTCTC 2 cut(s) 132, 371
BsrDI GCAATG 2 cut(s) 27, 236
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 333
BstC8I GCNNGC 2 cut(s) 172, 176
BstDEI CTNAG 3 cut(s) 37, 147, 205
BstFNI CGCG 1 cut(s) 200
BstH2I RGCGCY 1 cut(s) 113
BstHHI GCGC 2 cut(s) 112, 200
BstKTI GATC 1 cut(s) 25
BstMAI GTCTC 2 cut(s) 132, 371
BstMBI GATC 1 cut(s) 22
BstMWI GCNNNNNNNGC 3 cut(s) 107, 171, 349
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 3 cut(s) 66, 102, 286
BstSLI GKGCMC 1 cut(s) 167
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 1 cut(s) 119
BstV2I GAAGAC 2 cut(s) 84, 285
BsuRI GGCC 2 cut(s) 291, 343
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 2 cut(s) 172, 176
CfoI GCGC 2 cut(s) 112, 200
Cfr13I GGNCC 1 cut(s) 342
Csp6I GTAC 1 cut(s) 202
CviAII CATG 1 cut(s) 283
CviJI RGCY 6 cut(s) 17, 178, 211, 229, 291, 343
CviKI_1 RGCY 6 cut(s) 17, 178, 211, 229, 291, 343
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 3 cut(s) 37, 147, 205
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
DraI TTTAAA 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco31I GGTCTC 2 cut(s) 132, 371
Eco47III AGCGCT 1 cut(s) 111
EcoRI GAATTC 1 cut(s) 370
FaeI CATG 1 cut(s) 286
FaiI YATR 6 cut(s) 21, 182, 276, 284, 432, 448
FatI CATG 1 cut(s) 282
Fnu4HI GCNGC 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 2 cut(s) 213, 245
GlaI GCGC 2 cut(s) 111, 199
GluI GCNGC 1 cut(s) 108
HaeII RGCGCY 1 cut(s) 113
HaeIII GGCC 2 cut(s) 291, 343
HapII CCGG 3 cut(s) 68, 104, 288
HhaI GCGC 2 cut(s) 112, 200
Hin1II CATG 1 cut(s) 286
Hin6I GCGC 2 cut(s) 110, 198
HinP1I GCGC 2 cut(s) 110, 198
HinfI GANTC 1 cut(s) 385
HpaII CCGG 3 cut(s) 68, 104, 288
Hpy188I TCNGA 2 cut(s) 64, 376
Hpy188III TCNNGA 1 cut(s) 332
Hpy99I CGWCG 1 cut(s) 366
HpyAV CCTTC 1 cut(s) 145
HpyCH4V TGCA 3 cut(s) 32, 236, 416
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 171, 349
HpyF3I CTNAG 3 cut(s) 37, 147, 205
Hsp92II CATG 1 cut(s) 286
HspAI GCGC 2 cut(s) 110, 198
Kzo9I GATC 1 cut(s) 22
Lsp1109I GCAGC 1 cut(s) 119
MaeI CTAG 2 cut(s) 213, 245
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MboII GAAGA 4 cut(s) 65, 89, 290, 320
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 1 cut(s) 370
MroXI GAANNNNTTC 1 cut(s) 370
MseI TTAA 2 cut(s) 48, 252
MspI CCGG 3 cut(s) 68, 104, 288
MspR9I CCNGG 3 cut(s) 68, 104, 288
Mva1269I GAATGC 1 cut(s) 90
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 3 cut(s) 107, 171, 349
NciI CCSGG 3 cut(s) 68, 104, 288
NdeII GATC 1 cut(s) 22
NlaIII CATG 1 cut(s) 286
NlaIV GGNNCC 1 cut(s) 357
NspI RCATGY 1 cut(s) 286
PctI GAATGC 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 370
PfeI GAWTC 1 cut(s) 385
PflFI GACNNNGTC 1 cut(s) 83
PkrI GCNGC 1 cut(s) 109
PsiI TTATAA 1 cut(s) 432
PspN4I GGNNCC 1 cut(s) 357
PspPI GGNCC 1 cut(s) 342
PsyI GACNNNGTC 1 cut(s) 83
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SaqAI TTAA 2 cut(s) 48, 252
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 1 cut(s) 22
Sau96I GGNCC 1 cut(s) 342
ScrFI CCNGG 3 cut(s) 68, 104, 288
SduI GDGCHC 1 cut(s) 167
SetI ASST 7 cut(s) 38, 45, 127, 156, 189, 361, 405
Sse9I AATT 1 cut(s) 370
SsiI CCGC 2 cut(s) 88, 266
SspMI CTAG 2 cut(s) 213, 245
StyD4I CCNGG 3 cut(s) 66, 102, 286
TaqI TCGA 1 cut(s) 361
TasI AATT 1 cut(s) 370
TfiI GAWTC 1 cut(s) 385
Tru1I TTAA 2 cut(s) 48, 252
Tru9I TTAA 2 cut(s) 48, 252
TscAI CASTG 1 cut(s) 238
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 3 cut(s) 66, 291, 383
TspRI CASTG 1 cut(s) 238
Tth111I GACNNNGTC 1 cut(s) 83
XapI RAATTY 1 cut(s) 370
XceI RCATGY 1 cut(s) 286
XmnI GAANNNNTTC 1 cut(s) 370
XspI CTAG 2 cut(s) 213, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.