Rmu_sc0001887.1_g000006

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001887.1
OG0000176
Physical Location & Seq
Reverse (-)
21671 .. 26018
4348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001887.1_g000006.1.cds

Sequence Viewer

Length: 717 bp
atggtggaaaaagaggcttatgatcgcatcgcgaccttagaggtcgttaatgaagaactttctgacccggaggacgaagatgaagtcaatattcaactcgccccggcggcgctggacgacacacctcccaaagttaaagcccctattgagaaggttaatctgggtacagcagacaagcctatggaggtatctatcagcgcttatctagagcctagcgagaaacagcggctcactgacttattattagagtttaaagactgcttcgcagataaatatgaagacatgcccggcctgtcaccagatttggtttgtcatcaactaccaacccttcctgacaagaggcccgtcaagcaggaacctcgacgaatgaattcggagacccagattcttgtaaaggaagagttgtggttgcggggagaaagatctgggcgctacaacctcagagcattcttcctctctacactcagatcctcctccgatcggagtcgccactgctgtcatcggtaccggaggaagagggaaagaagagatccttcataccccttccttgggcctttcctccgggcaggagttggagtctggggcgagcgcgactcacaaccacatctacctcctggggaaaaacagaagtctcgtacccaggccccagaggtagaccgcggaggcagagcggaagacctcaaagtggccttcctcccttcctccactcgctcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

238

Amino Acids

27.24

Weight (kDa)

5.94

Isoelectric Point (pI)

67.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 504
AccB1I GGYRCC 1 cut(s) 504
AccBSI CCGCTC 1 cut(s) 671
AccI GTMKAC 1 cut(s) 654
AccII CGCG 3 cut(s) 32, 591, 660
AciI CCGC 6 cut(s) 107, 226, 412, 658, 660, 671
AclWI GGATC 2 cut(s) 462, 524
AcsI RAATTY 1 cut(s) 370
AfaI GTAC 3 cut(s) 166, 506, 637
AfeI AGCGCT 1 cut(s) 199
AfiI CCNNNNNNNGG 4 cut(s) 480, 548, 549, 685
AgsI TTSAA 1 cut(s) 95
AjnI CCWGG 2 cut(s) 613, 639
Alw26I GTCTC 2 cut(s) 371, 636
AlwI GGATC 2 cut(s) 462, 524
Aor51HI AGCGCT 1 cut(s) 199
AoxI GGCC 5 cut(s) 289, 341, 551, 642, 687
ApoI RAATTY 1 cut(s) 370
ArsI GACNNNNNNTTYG 2 cut(s) 69, 101
Asp700I GAANNNNTTC 1 cut(s) 370
Asp718I GGTACC 1 cut(s) 504
AspLEI GCGC 4 cut(s) 112, 200, 432, 591
AspS9I GGNCC 3 cut(s) 342, 551, 643
AsuC2I CCSGG 4 cut(s) 68, 104, 288, 563
AsuHPI GGTGA 1 cut(s) 288
BanI GGYRCC 1 cut(s) 504
BbsI GAAGAC 2 cut(s) 285, 681
BcgI CGANNNNNNTGC 2 cut(s) 341, 375
BciT130I CCWGG 2 cut(s) 615, 641
BcnI CCSGG 4 cut(s) 68, 104, 288, 563
BcoDI GTCTC 2 cut(s) 371, 636
BfaI CTAG 3 cut(s) 206, 213, 715
BfoI RGCGCY 3 cut(s) 113, 201, 433
BglI GCCNNNNNGGC 1 cut(s) 107
BglII AGATCT 1 cut(s) 422
BisI GCNGC 2 cut(s) 108, 227
BlsI GCNGC 2 cut(s) 109, 228
Bme1390I CCNGG 6 cut(s) 68, 104, 288, 563, 615, 641
BmgT120I GGNCC 3 cut(s) 342, 551, 643
BmiI GGNNCC 3 cut(s) 357, 506, 645
BmrFI CCNGG 6 cut(s) 68, 104, 288, 563, 615, 641
BmsI GCATC 1 cut(s) 36
BpiI GAAGAC 2 cut(s) 285, 681
BplI GAGNNNNNCTC 2 cut(s) 578, 610
BpuMI CCSGG 4 cut(s) 68, 104, 288, 563
BsaI GGTCTC 1 cut(s) 371
BsaJI CCNNGG 5 cut(s) 102, 547, 614, 639, 658
BsaWI WCCGGW 1 cut(s) 507
BsaXI ACNNNNNCTCC 2 cut(s) 561, 591
Bsc4I CCNNNNNNNGG 4 cut(s) 480, 548, 549, 685
BseBI CCWGG 2 cut(s) 615, 641
BseDI CCNNGG 5 cut(s) 102, 547, 614, 639, 658
BseLI CCNNNNNNNGG 4 cut(s) 480, 548, 549, 685
BseMII CTCAG 2 cut(s) 454, 478
BseRI GAGGAG 1 cut(s) 463
Bsh1236I CGCG 3 cut(s) 32, 591, 660
Bsh1285I CGRYCG 1 cut(s) 481
BshFI GGCC 5 cut(s) 291, 343, 553, 644, 689
BshNI GGYRCC 1 cut(s) 504
BsiEI CGRYCG 1 cut(s) 481
BsiSI CCGG 5 cut(s) 68, 104, 288, 508, 562
BslI CCNNNNNNNGG 4 cut(s) 480, 548, 549, 685
BsmAI GTCTC 2 cut(s) 371, 636
BsmI GAATGC 1 cut(s) 446
BsnI GGCC 5 cut(s) 291, 343, 553, 644, 689
Bso31I GGTCTC 1 cut(s) 371
Bsp143I GATC 5 cut(s) 22, 422, 467, 478, 529
Bsp68I TCGCGA 1 cut(s) 32
BspACI CCGC 6 cut(s) 107, 226, 412, 658, 660, 671
BspANI GGCC 5 cut(s) 291, 343, 553, 644, 689
BspCNI CTCAG 2 cut(s) 453, 477
BspFNI CGCG 3 cut(s) 32, 591, 660
BspLI GGNNCC 3 cut(s) 357, 506, 645
BspPI GGATC 2 cut(s) 462, 524
BspT107I GGYRCC 1 cut(s) 504
BspTNI GGTCTC 1 cut(s) 371
BsrBI CCGCTC 1 cut(s) 671
BssECI CCNNGG 5 cut(s) 102, 547, 614, 639, 658
BssMI GATC 5 cut(s) 22, 422, 467, 478, 529
BssT1I CCWWGG 1 cut(s) 547
Bst2UI CCWGG 2 cut(s) 615, 641
Bst6I CTCTTC 3 cut(s) 393, 509, 520
BstC8I GCNNGC 1 cut(s) 587
BstDEI CTNAG 3 cut(s) 37, 440, 464
BstDSI CCRYGG 1 cut(s) 658
BstFNI CGCG 3 cut(s) 32, 591, 660
BstH2I RGCGCY 3 cut(s) 113, 201, 433
BstHHI GCGC 4 cut(s) 112, 200, 432, 591
BstKTI GATC 5 cut(s) 25, 425, 470, 481, 532
BstMAI GTCTC 2 cut(s) 371, 636
BstMBI GATC 5 cut(s) 22, 422, 467, 478, 529
BstMCI CGRYCG 1 cut(s) 481
BstMWI GCNNNNNNNGC 2 cut(s) 107, 349
BstNI CCWGG 2 cut(s) 615, 641
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 6 cut(s) 66, 102, 286, 561, 613, 639
BstUI CGCG 3 cut(s) 32, 591, 660
BstV2I GAAGAC 2 cut(s) 285, 681
BstX2I RGATCY 3 cut(s) 422, 467, 529
BstYI RGATCY 3 cut(s) 422, 467, 529
BsuRI GGCC 5 cut(s) 291, 343, 553, 644, 689
BtgI CCRYGG 1 cut(s) 658
BtgZI GCGATG 1 cut(s) 13
BtsI GCAGTG 1 cut(s) 490
BtsIMutI CAGTG 2 cut(s) 231, 490
BtuMI TCGCGA 1 cut(s) 32
Cac8I GCNNGC 1 cut(s) 587
CfoI GCGC 4 cut(s) 112, 200, 432, 591
Cfr13I GGNCC 3 cut(s) 342, 551, 643
Cfr42I CCGCGG 1 cut(s) 661
Csp6I GTAC 3 cut(s) 165, 505, 636
CviAII CATG 1 cut(s) 283
CviQI GTAC 3 cut(s) 165, 505, 636
DdeI CTNAG 3 cut(s) 37, 440, 464
DpnI GATC 5 cut(s) 24, 424, 469, 480, 531
DpnII GATC 5 cut(s) 22, 422, 467, 478, 529
DraI TTTAAA 1 cut(s) 253
Eam1104I CTCTTC 3 cut(s) 393, 509, 520
EarI CTCTTC 3 cut(s) 393, 509, 520
Eco130I CCWWGG 1 cut(s) 547
Eco31I GGTCTC 1 cut(s) 371
Eco47III AGCGCT 1 cut(s) 199
EcoO109I RGGNCCY 1 cut(s) 643
EcoRI GAATTC 1 cut(s) 370
EcoRII CCWGG 2 cut(s) 613, 639
EcoT14I CCWWGG 1 cut(s) 547
ErhI CCWWGG 1 cut(s) 547
FaeI CATG 1 cut(s) 286
FaiI YATR 5 cut(s) 21, 182, 276, 284, 538
FalI AAGNNNNNCTT 2 cut(s) 517, 549
FatI CATG 1 cut(s) 282
FauI CCCGC 1 cut(s) 405
FblI GTMKAC 1 cut(s) 654
Fnu4HI GCNGC 2 cut(s) 108, 227
Fsp4HI GCNGC 2 cut(s) 108, 227
FspBI CTAG 3 cut(s) 206, 213, 715
GlaI GCGC 4 cut(s) 111, 199, 431, 590
GluI GCNGC 2 cut(s) 108, 227
HaeII RGCGCY 3 cut(s) 113, 201, 433
HaeIII GGCC 5 cut(s) 291, 343, 553, 644, 689
HapII CCGG 5 cut(s) 68, 104, 288, 508, 562
HhaI GCGC 4 cut(s) 112, 200, 432, 591
Hin1II CATG 1 cut(s) 286
Hin6I GCGC 4 cut(s) 110, 198, 430, 589
HinP1I GCGC 4 cut(s) 110, 198, 430, 589
HinfI GANTC 4 cut(s) 385, 484, 576, 593
HpaII CCGG 5 cut(s) 68, 104, 288, 508, 562
HphI GGTGA 1 cut(s) 288
Hpy166II GTNNAC 1 cut(s) 655
Hpy188I TCNGA 6 cut(s) 64, 376, 443, 467, 478, 483
Hpy188III TCNNGA 3 cut(s) 31, 206, 332
Hpy8I GTNNAC 1 cut(s) 655
Hpy99I CGWCG 1 cut(s) 366
HpyAV CCTTC 6 cut(s) 145, 338, 543, 553, 700, 708
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 349
HpyF3I CTNAG 3 cut(s) 37, 440, 464
Hsp92II CATG 1 cut(s) 286
HspAI GCGC 4 cut(s) 110, 198, 430, 589
KpnI GGTACC 1 cut(s) 508
KspI CCGCGG 1 cut(s) 661
Kzo9I GATC 5 cut(s) 22, 422, 467, 478, 529
LmnI GCTCC 1 cut(s) 716
LweI GCATC 1 cut(s) 36
MaeI CTAG 3 cut(s) 206, 213, 715
MaeIII GTNAC 1 cut(s) 294
MalI GATC 5 cut(s) 24, 424, 469, 480, 531
MbiI CCGCTC 1 cut(s) 671
MboI GATC 5 cut(s) 22, 422, 467, 478, 529
MboII GAAGA 8 cut(s) 65, 89, 290, 410, 442, 526, 537, 686
MflI RGATCY 3 cut(s) 422, 467, 529
MluCI AATT 1 cut(s) 370
MlyI GAGTC 3 cut(s) 493, 585, 587
MmeI TCCRAC 1 cut(s) 553
MroXI GAANNNNTTC 1 cut(s) 370
MseI TTAA 4 cut(s) 48, 135, 156, 252
MspA1I CMGCKG 2 cut(s) 226, 660
MspI CCGG 5 cut(s) 68, 104, 288, 508, 562
MspR9I CCNGG 6 cut(s) 68, 104, 288, 563, 615, 641
Mva1269I GAATGC 1 cut(s) 446
MvaI CCWGG 2 cut(s) 615, 641
MvnI CGCG 3 cut(s) 32, 591, 660
MwoI GCNNNNNNNGC 2 cut(s) 107, 349
NciI CCSGG 4 cut(s) 68, 104, 288, 563
NdeII GATC 5 cut(s) 22, 422, 467, 478, 529
NlaIII CATG 1 cut(s) 286
NlaIV GGNNCC 3 cut(s) 357, 506, 645
NmuCI GTSAC 1 cut(s) 294
NruI TCGCGA 1 cut(s) 32
NspI RCATGY 1 cut(s) 286
PctI GAATGC 1 cut(s) 446
PdmI GAANNNNTTC 1 cut(s) 370
PfeI GAWTC 1 cut(s) 385
PkrI GCNGC 2 cut(s) 109, 228
Ple19I CGATCG 1 cut(s) 481
PleI GAGTC 3 cut(s) 492, 584, 587
PpsI GAGTC 3 cut(s) 492, 584, 587
Psp6I CCWGG 2 cut(s) 613, 639
PspGI CCWGG 2 cut(s) 613, 639
PspN4I GGNNCC 3 cut(s) 357, 506, 645
PspPI GGNCC 3 cut(s) 342, 551, 643
PsuI RGATCY 3 cut(s) 422, 467, 529
PvuI CGATCG 1 cut(s) 481
RruI TCGCGA 1 cut(s) 32
RsaI GTAC 3 cut(s) 166, 506, 637
RsaNI GTAC 3 cut(s) 165, 505, 636
SacII CCGCGG 1 cut(s) 661
SaqAI TTAA 4 cut(s) 48, 135, 156, 252
SatI GCNGC 2 cut(s) 108, 227
Sau3AI GATC 5 cut(s) 22, 422, 467, 478, 529
Sau96I GGNCC 3 cut(s) 342, 551, 643
SchI GAGTC 3 cut(s) 493, 585, 587
ScrFI CCNGG 6 cut(s) 68, 104, 288, 563, 615, 641
SfaNI GCATC 1 cut(s) 36
Sfr303I CCGCGG 1 cut(s) 661
SgrBI CCGCGG 1 cut(s) 661
Sse9I AATT 1 cut(s) 370
SsiI CCGC 6 cut(s) 107, 226, 412, 658, 660, 671
SspI AATATT 1 cut(s) 91
SspMI CTAG 3 cut(s) 206, 213, 715
StyD4I CCNGG 6 cut(s) 66, 102, 286, 561, 613, 639
StyI CCWWGG 1 cut(s) 547
TaqI TCGA 1 cut(s) 361
TasI AATT 1 cut(s) 370
TauI GCSGC 2 cut(s) 110, 229
TfiI GAWTC 1 cut(s) 385
Tru1I TTAA 4 cut(s) 48, 135, 156, 252
Tru9I TTAA 4 cut(s) 48, 135, 156, 252
TscAI CASTG 2 cut(s) 238, 497
TseFI GTSAC 1 cut(s) 294
Tsp45I GTSAC 1 cut(s) 294
TspDTI ATGAA 5 cut(s) 66, 96, 291, 383, 525
TspRI CASTG 2 cut(s) 238, 497
XapI RAATTY 1 cut(s) 370
XbaI TCTAGA 1 cut(s) 205
XceI RCATGY 1 cut(s) 286
XmiI GTMKAC 1 cut(s) 654
XmnI GAANNNNTTC 1 cut(s) 370
XspI CTAG 3 cut(s) 206, 213, 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.