Rmu_sc0005125.1_g000028

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005125.1
OG0000176
Physical Location & Seq
Reverse (-)
111566 .. 111925
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005125.1_g000028.1.cds

Sequence Viewer

Length: 360 bp
atgatcacaaccttggaggtcgtcaatgaagagctctctgatcaagagcgagagaacgaaatggaaattcagcttgctccggcagcgctggacgatacacctcctaaagtcagagaccctactgagaagattaatctgggagcagtggacgagccgatagaagtggctatcagtacttacctagagcctagcgagaaacagaggctcacagatttgttactagagtttaaggattgctttgcagagaagtatgaagatatgcccggcctgtcaccaaaattggtttgccatcagctactaacgctccctgacaagaggccagtgaagcaagaaccgcgaagaatgaatgtagagacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

119

Amino Acids

13.62

Weight (kDa)

4.46

Isoelectric Point (pI)

54.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 337
AciI CCGC 1 cut(s) 335
AcsI RAATTY 1 cut(s) 66
AfaI GTAC 1 cut(s) 175
AfeI AGCGCT 1 cut(s) 87
AluBI AGCT 3 cut(s) 34, 73, 295
AluI AGCT 3 cut(s) 34, 73, 295
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 2 cut(s) 108, 347
Aor51HI AGCGCT 1 cut(s) 87
AoxI GGCC 2 cut(s) 265, 317
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 66
AseI ATTAAT 1 cut(s) 132
AspLEI GCGC 1 cut(s) 88
AsuC2I CCSGG 1 cut(s) 264
AsuHPI GGTGA 1 cut(s) 264
BanII GRGCYC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 95
BccI CCATC 1 cut(s) 297
BclI TGATCA 2 cut(s) 3, 40
BcnI CCSGG 1 cut(s) 264
BcoDI GTCTC 2 cut(s) 108, 347
BfaI CTAG 4 cut(s) 182, 189, 221, 358
BfoI RGCGCY 1 cut(s) 89
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
BmcAI AGTACT 1 cut(s) 175
Bme1390I CCNGG 1 cut(s) 264
BmrFI CCNGG 1 cut(s) 264
BpuMI CCSGG 1 cut(s) 264
BsaI GGTCTC 2 cut(s) 108, 347
BsaJI CCNNGG 1 cut(s) 12
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bse1I ACTGG 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 320
BseXI GCAGC 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 337
BshFI GGCC 2 cut(s) 267, 319
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 2 cut(s) 80, 264
BsmAI GTCTC 2 cut(s) 108, 347
BsnI GGCC 2 cut(s) 267, 319
Bso31I GGTCTC 2 cut(s) 108, 347
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 2 cut(s) 3, 40
BspACI CCGC 1 cut(s) 335
BspANI GGCC 2 cut(s) 267, 319
BspCNI CTCAG 1 cut(s) 115
BspFNI CGCG 1 cut(s) 337
BspQI GCTCTTC 1 cut(s) 24
BspTNI GGTCTC 2 cut(s) 108, 347
BsrI ACTGG 1 cut(s) 320
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 2 cut(s) 3, 40
BssT1I CCWWGG 1 cut(s) 12
Bst6I CTCTTC 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 123
BstFNI CGCG 1 cut(s) 337
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 2 cut(s) 6, 43
BstMAI GTCTC 2 cut(s) 108, 347
BstMBI GATC 2 cut(s) 3, 40
BstMWI GCNNNNNNNGC 4 cut(s) 83, 301, 325, 334
BstSCI CCNGG 1 cut(s) 262
BstUI CGCG 1 cut(s) 337
BstV1I GCAGC 1 cut(s) 95
BsuRI GGCC 2 cut(s) 267, 319
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 2 cut(s) 150, 327
Cac8I GCNNGC 1 cut(s) 75
CfoI GCGC 1 cut(s) 88
Csp6I GTAC 1 cut(s) 174
CviJI RGCY 9 cut(s) 34, 73, 154, 167, 187, 205, 267, 295, 319
CviKI_1 RGCY 9 cut(s) 34, 73, 154, 167, 187, 205, 267, 295, 319
CviQI GTAC 1 cut(s) 174
DdeI CTNAG 1 cut(s) 123
DpnI GATC 2 cut(s) 5, 42
DpnII GATC 2 cut(s) 3, 40
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Ecl136II GAGCTC 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 36
Eco31I GGTCTC 2 cut(s) 108, 347
Eco47III AGCGCT 1 cut(s) 87
Eco53kI GAGCTC 1 cut(s) 34
EcoICRI GAGCTC 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 12
EcoT38I GRGCYC 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 12
FaiI YATR 2 cut(s) 252, 260
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FbaI TGATCA 2 cut(s) 3, 40
Fnu4HI GCNGC 1 cut(s) 84
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 4 cut(s) 182, 189, 221, 358
GlaI GCGC 1 cut(s) 87
GluI GCNGC 1 cut(s) 84
HaeII RGCGCY 1 cut(s) 89
HaeIII GGCC 2 cut(s) 267, 319
HapII CCGG 2 cut(s) 80, 264
HhaI GCGC 1 cut(s) 88
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HpaII CCGG 2 cut(s) 80, 264
HphI GGTGA 1 cut(s) 264
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 2 cut(s) 40, 113
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 1 cut(s) 148
HpyCH4V TGCA 1 cut(s) 242
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 301, 325, 334
HpyF3I CTNAG 1 cut(s) 123
HspAI GCGC 1 cut(s) 86
Ksp22I TGATCA 2 cut(s) 3, 40
Kzo9I GATC 2 cut(s) 3, 40
LguI GCTCTTC 1 cut(s) 24
LmnI GCTCC 3 cut(s) 82, 140, 309
LpnPI CCDG 7 cut(s) 74, 93, 122, 277, 281, 321, 333
Lsp1109I GCAGC 1 cut(s) 95
MaeI CTAG 4 cut(s) 182, 189, 221, 358
MaeIII GTNAC 2 cut(s) 216, 270
MalI GATC 2 cut(s) 5, 42
MboI GATC 2 cut(s) 3, 40
MboII GAAGA 4 cut(s) 41, 139, 266, 351
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 2 cut(s) 66, 278
MnlI CCTC 4 cut(s) 10, 111, 195, 309
MseI TTAA 2 cut(s) 132, 228
MspI CCGG 2 cut(s) 80, 264
MspR9I CCNGG 1 cut(s) 264
MvnI CGCG 1 cut(s) 337
MwoI GCNNNNNNNGC 4 cut(s) 83, 301, 325, 334
NciI CCSGG 1 cut(s) 264
NdeII GATC 2 cut(s) 3, 40
NmuCI GTSAC 1 cut(s) 270
PciSI GCTCTTC 1 cut(s) 24
PkrI GCNGC 1 cut(s) 85
PshBI ATTAAT 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 36
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
SacI GAGCTC 1 cut(s) 36
SapI GCTCTTC 1 cut(s) 24
SaqAI TTAA 2 cut(s) 132, 228
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 2 cut(s) 3, 40
ScaI AGTACT 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 1 cut(s) 36
SetI ASST 8 cut(s) 14, 21, 36, 75, 103, 183, 297, 359
Sse9I AATT 2 cut(s) 66, 278
SsiI CCGC 1 cut(s) 335
SspMI CTAG 4 cut(s) 182, 189, 221, 358
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 1 cut(s) 262
StyI CCWWGG 1 cut(s) 12
TasI AATT 2 cut(s) 66, 278
TatI WGTACW 1 cut(s) 173
Tru1I TTAA 2 cut(s) 132, 228
Tru9I TTAA 2 cut(s) 132, 228
TscAI CASTG 2 cut(s) 150, 327
TseFI GTSAC 1 cut(s) 270
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 270
TspDTI ATGAA 3 cut(s) 42, 267, 359
TspRI CASTG 2 cut(s) 150, 327
VspI ATTAAT 1 cut(s) 132
XapI RAATTY 1 cut(s) 66
XspI CTAG 4 cut(s) 182, 189, 221, 358
ZrmI AGTACT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.