Rmu_sc0002638.1_g000047

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002638.1
OG0000176
Physical Location & Seq
Reverse (-)
158357 .. 158722
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002638.1_g000047.1.cds

Sequence Viewer

Length: 366 bp
atggtggaaaaagaggcttatgatagcatcgcgaccttggaggtcgttaatgaagaactttcttatccggagcgcgaagctgaagtcagcattcaactcgccccggcagcgctggacgatacacgtcctaaagtcagagactctactgaaagggttaatcagggaacagtggacgagcctatggaggtggctatcagtgcttacttagagcctagcgagaaacagaggctcaatgagttgttattagagtttaaggattgctttgcggagaagtatgaagacatgcccgacctgtcaccagatttggtttgtcatcaactaccaactctccctgataagagacccgtgaagaaagaacctcgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

121

Amino Acids

13.83

Weight (kDa)

4.45

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 32, 75
AccIII TCCGGA 1 cut(s) 67
AciI CCGC 1 cut(s) 266
AcuI CTGAAG 1 cut(s) 102
AfeI AGCGCT 1 cut(s) 111
AflIII ACRYGT 1 cut(s) 122
AgsI TTSAA 1 cut(s) 95
AjiI CACGTC 1 cut(s) 125
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
Alw26I GTCTC 2 cut(s) 132, 334
Aor13HI TCCGGA 1 cut(s) 67
Aor51HI AGCGCT 1 cut(s) 111
ApeKI GCWGC 1 cut(s) 107
ArsI GACNNNNNNTTYG 2 cut(s) 69, 101
AspLEI GCGC 2 cut(s) 75, 112
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 119
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BcnI CCSGG 1 cut(s) 104
BcoDI GTCTC 2 cut(s) 132, 334
BfaI CTAG 1 cut(s) 213
BfoI RGCGCY 1 cut(s) 113
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 104
BmgBI CACGTC 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 1 cut(s) 36
BpiI GAAGAC 1 cut(s) 285
BpuMI CCSGG 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 334
BsaJI CCNNGG 2 cut(s) 36, 102
BsaWI WCCGGW 1 cut(s) 67
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
BseAI TCCGGA 1 cut(s) 67
BseDI CCNNGG 2 cut(s) 36, 102
BseXI GCAGC 1 cut(s) 119
Bsh1236I CGCG 2 cut(s) 32, 75
BsiSI CCGG 2 cut(s) 68, 104
BsmAI GTCTC 2 cut(s) 132, 334
BsmI GAATGC 1 cut(s) 90
Bso31I GGTCTC 1 cut(s) 334
Bsp13I TCCGGA 1 cut(s) 67
Bsp68I TCGCGA 1 cut(s) 32
BspACI CCGC 1 cut(s) 266
BspEI TCCGGA 1 cut(s) 67
BspFNI CGCG 2 cut(s) 32, 75
BspTNI GGTCTC 1 cut(s) 334
BssECI CCNNGG 2 cut(s) 36, 102
BssT1I CCWWGG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 169
BstDEI CTNAG 1 cut(s) 205
BstFNI CGCG 2 cut(s) 32, 75
BstH2I RGCGCY 1 cut(s) 113
BstHHI GCGC 2 cut(s) 75, 112
BstMAI GTCTC 2 cut(s) 132, 334
BstMWI GCNNNNNNNGC 2 cut(s) 107, 197
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 102
BstUI CGCG 2 cut(s) 32, 75
BstV1I GCAGC 1 cut(s) 119
BstV2I GAAGAC 1 cut(s) 285
BtgZI GCGATG 1 cut(s) 13
BtrI CACGTC 1 cut(s) 125
BtsIMutI CAGTG 2 cut(s) 174, 202
BtuMI TCGCGA 1 cut(s) 32
CfoI GCGC 2 cut(s) 75, 112
CviAII CATG 1 cut(s) 283
CviJI RGCY 6 cut(s) 17, 80, 178, 191, 211, 229
CviKI_1 RGCY 6 cut(s) 17, 80, 178, 191, 211, 229
DdeI CTNAG 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 36
Eco31I GGTCTC 1 cut(s) 334
Eco47III AGCGCT 1 cut(s) 111
Eco57I CTGAAG 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 1 cut(s) 286
FaiI YATR 4 cut(s) 21, 182, 276, 284
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FatI CATG 1 cut(s) 282
Fnu4HI GCNGC 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 1 cut(s) 213
GlaI GCGC 2 cut(s) 74, 111
GluI GCNGC 1 cut(s) 108
HaeII RGCGCY 1 cut(s) 113
HapII CCGG 2 cut(s) 68, 104
HhaI GCGC 2 cut(s) 75, 112
Hin1II CATG 1 cut(s) 286
Hin6I GCGC 2 cut(s) 73, 110
HinP1I GCGC 2 cut(s) 73, 110
HinfI GANTC 1 cut(s) 140
HpaII CCGG 2 cut(s) 68, 104
HphI GGTGA 1 cut(s) 288
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 1 cut(s) 137
Hpy188III TCNNGA 2 cut(s) 31, 68
Hpy8I GTNNAC 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 124
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 197
HpyF3I CTNAG 1 cut(s) 205
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 1 cut(s) 286
HspAI GCGC 2 cut(s) 73, 110
Kpn2I TCCGGA 1 cut(s) 67
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 7 cut(s) 81, 98, 117, 146, 305, 312, 345
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 1 cut(s) 36
MaeI CTAG 1 cut(s) 213
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 1 cut(s) 294
MboII GAAGA 3 cut(s) 65, 290, 361
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 4 cut(s) 7, 34, 178, 219
MroI TCCGGA 1 cut(s) 67
MseI TTAA 3 cut(s) 48, 156, 252
MspI CCGG 2 cut(s) 68, 104
MspR9I CCNGG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 90
MvnI CGCG 2 cut(s) 32, 75
MwoI GCNNNNNNNGC 2 cut(s) 107, 197
NciI CCSGG 1 cut(s) 104
NlaIII CATG 1 cut(s) 286
NmuCI GTSAC 1 cut(s) 294
NruI TCGCGA 1 cut(s) 32
NspI RCATGY 1 cut(s) 286
PctI GAATGC 1 cut(s) 90
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
RruI TCGCGA 1 cut(s) 32
SaqAI TTAA 3 cut(s) 48, 156, 252
SatI GCNGC 1 cut(s) 108
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 104
SetI ASST 7 cut(s) 38, 45, 82, 127, 189, 294, 361
SfaNI GCATC 1 cut(s) 36
SsiI CCGC 1 cut(s) 266
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 102
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 1 cut(s) 127
TaqI TCGA 1 cut(s) 361
Tru1I TTAA 3 cut(s) 48, 156, 252
Tru9I TTAA 3 cut(s) 48, 156, 252
TscAI CASTG 2 cut(s) 174, 202
TseFI GTSAC 1 cut(s) 294
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 294
TspDTI ATGAA 2 cut(s) 66, 291
TspRI CASTG 2 cut(s) 174, 202
XceI RCATGY 1 cut(s) 286
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.