Rroxscaffold_3G00274700

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
66323801 .. 66324585
785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00274700.1

Sequence Viewer

Length: 375 bp
ATGCAACCGCTCGGAATCAATAAAGAGAAGATTCGCCTACATCGTTACGCGGCTTACGCGCTATTCTCGCGCGAGACCGGATCCACCGGAGTTACCGTGTTCGTCAACTCTCCACCAGAACCGATTATGTGGAACAGGGAGACAGATAGAGCCGAAGTAATTAAGGCGGACCCTCGCCCATTCCTAGTGTCCGCGAATTATGTAGATGCCAAGTACTATTTGGAGCCTATCACTCCATTACGGGTCGGTGGCATTGATGACAAAGGCCGCCCCACGGGGGTGACGGCCTACGAATTGGCGCGGTGGGGGCTTACGCCGGCAAAAGAAGGCTTGGAAAGGCCCGGCCACGCCGTGCCCAAACCCTTAAACGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

124

Amino Acids

13.83

Weight (kDa)

8.92

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 10
AccII CGCG 6 cut(s) 50, 59, 70, 72, 194, 301
AciI CCGC 6 cut(s) 8, 50, 167, 192, 268, 301
AclWI GGATC 2 cut(s) 75, 88
AcoI YGGCCR 1 cut(s) 343
AdeI CACNNNGTG 1 cut(s) 352
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 2 cut(s) 274, 277
AleI CACNNNNGTG 1 cut(s) 278
Alw26I GTCTC 2 cut(s) 68, 134
AlwI GGATC 2 cut(s) 75, 88
AoxI GGCC 4 cut(s) 265, 285, 338, 343
AspLEI GCGC 3 cut(s) 61, 72, 301
AspS9I GGNCC 2 cut(s) 169, 339
AsuC2I CCSGG 1 cut(s) 342
AsuHPI GGTGA 1 cut(s) 292
AvaII GGWCC 1 cut(s) 169
BaeGI GKGCMC 1 cut(s) 357
BamHI GGATCC 1 cut(s) 80
BceAI ACGGC 2 cut(s) 300, 335
BcnI CCSGG 1 cut(s) 342
BcoDI GTCTC 2 cut(s) 68, 134
BfaI CTAG 1 cut(s) 185
BisI GCNGC 2 cut(s) 51, 268
BlsI GCNGC 2 cut(s) 52, 269
BmcAI AGTACT 1 cut(s) 215
Bme1390I CCNGG 1 cut(s) 342
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 2 cut(s) 169, 339
BmiI GGNNCC 3 cut(s) 82, 171, 225
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 196
BpuMI CCSGG 1 cut(s) 342
BsaI GGTCTC 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 273
BsaWI WCCGGW 2 cut(s) 77, 86
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 277
Bse118I RCCGGY 1 cut(s) 316
BseDI CCNNGG 1 cut(s) 273
BseLI CCNNNNNNNGG 2 cut(s) 274, 277
BseSI GKGCMC 1 cut(s) 357
Bsh1236I CGCG 6 cut(s) 50, 59, 70, 72, 194, 301
BshFI GGCC 4 cut(s) 267, 287, 340, 345
BsiSI CCGG 4 cut(s) 78, 87, 317, 342
BslI CCNNNNNNNGG 2 cut(s) 274, 277
BsmAI GTCTC 2 cut(s) 68, 134
BsnI GGCC 4 cut(s) 267, 287, 340, 345
Bso31I GGTCTC 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 357
Bsp143I GATC 1 cut(s) 80
BspACI CCGC 6 cut(s) 8, 50, 167, 192, 268, 301
BspANI GGCC 4 cut(s) 267, 287, 340, 345
BspFNI CGCG 6 cut(s) 50, 59, 70, 72, 194, 301
BspLI GGNNCC 3 cut(s) 82, 171, 225
BspPI GGATC 2 cut(s) 75, 88
BspTNI GGTCTC 1 cut(s) 68
BsrBI CCGCTC 1 cut(s) 10
BsrFI RCCGGY 1 cut(s) 316
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 318
BstDSI CCRYGG 1 cut(s) 273
BstFNI CGCG 6 cut(s) 50, 59, 70, 72, 194, 301
BstHHI GCGC 3 cut(s) 61, 72, 301
BstKTI GATC 1 cut(s) 83
BstMAI GTCTC 2 cut(s) 68, 134
BstMBI GATC 1 cut(s) 80
BstMWI GCNNNNNNNGC 3 cut(s) 56, 67, 307
BstSCI CCNGG 1 cut(s) 340
BstSLI GKGCMC 1 cut(s) 357
BstUI CGCG 6 cut(s) 50, 59, 70, 72, 194, 301
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BsuRI GGCC 4 cut(s) 267, 287, 340, 345
BtgI CCRYGG 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 318
CfoI GCGC 3 cut(s) 61, 72, 301
Cfr10I RCCGGY 1 cut(s) 316
Cfr13I GGNCC 2 cut(s) 169, 339
Csp6I GTAC 1 cut(s) 214
CviJI RGCY 9 cut(s) 53, 152, 226, 267, 287, 310, 330, 340, 345
CviKI_1 RGCY 9 cut(s) 53, 152, 226, 267, 287, 310, 330, 340, 345
CviQI GTAC 1 cut(s) 214
DpnI GATC 1 cut(s) 82
DpnII GATC 1 cut(s) 80
DraIII CACNNNGTG 1 cut(s) 352
EaeI YGGCCR 1 cut(s) 343
EciI GGCGGA 1 cut(s) 182
Eco31I GGTCTC 1 cut(s) 68
Eco47I GGWCC 1 cut(s) 169
FaiI YATR 2 cut(s) 128, 201
Fnu4HI GCNGC 2 cut(s) 51, 268
Fsp4HI GCNGC 2 cut(s) 51, 268
FspBI CTAG 1 cut(s) 185
GlaI GCGC 3 cut(s) 60, 71, 300
GluI GCNGC 2 cut(s) 51, 268
HaeIII GGCC 4 cut(s) 267, 287, 340, 345
HapII CCGG 4 cut(s) 78, 87, 317, 342
HhaI GCGC 3 cut(s) 61, 72, 301
Hin6I GCGC 3 cut(s) 59, 70, 299
HinP1I GCGC 3 cut(s) 59, 70, 299
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 2 cut(s) 15, 31
HpaII CCGG 4 cut(s) 78, 87, 317, 342
HphI GGTGA 1 cut(s) 292
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 1 cut(s) 14
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 320
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 67, 307
HspAI GCGC 3 cut(s) 59, 70, 299
KroI GCCGGC 1 cut(s) 316
KroNI GCCGGC 1 cut(s) 318
Kzo9I GATC 1 cut(s) 80
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 6 cut(s) 91, 100, 121, 129, 330, 355
LweI GCATC 1 cut(s) 196
MaeI CTAG 1 cut(s) 185
MaeIII GTNAC 3 cut(s) 44, 91, 280
MalI GATC 1 cut(s) 82
MbiI CCGCTC 1 cut(s) 10
MboI GATC 1 cut(s) 80
MboII GAAGA 1 cut(s) 40
MflI RGATCY 1 cut(s) 80
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 3 cut(s) 159, 196, 293
MnlI CCTC 1 cut(s) 183
MroNI GCCGGC 1 cut(s) 316
MseI TTAA 3 cut(s) 162, 365, 373
MslI CAYNNNNRTG 1 cut(s) 278
MspI CCGG 4 cut(s) 78, 87, 317, 342
MspR9I CCNGG 1 cut(s) 342
MvnI CGCG 6 cut(s) 50, 59, 70, 72, 194, 301
MwoI GCNNNNNNNGC 3 cut(s) 56, 67, 307
NaeI GCCGGC 1 cut(s) 318
NciI CCSGG 1 cut(s) 342
NdeII GATC 1 cut(s) 80
NgoMIV GCCGGC 1 cut(s) 316
NlaIV GGNNCC 3 cut(s) 82, 171, 225
NmuCI GTSAC 1 cut(s) 280
OliI CACNNNNGTG 1 cut(s) 278
PcsI WCGNNNNNNNCGW 1 cut(s) 40
PdiI GCCGGC 1 cut(s) 318
PfeI GAWTC 2 cut(s) 15, 31
PkrI GCNGC 2 cut(s) 52, 269
PspN4I GGNNCC 3 cut(s) 82, 171, 225
PspPI GGNCC 2 cut(s) 169, 339
PsuI RGATCY 1 cut(s) 80
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 278
SaqAI TTAA 3 cut(s) 162, 365, 373
SatI GCNGC 2 cut(s) 51, 268
Sau3AI GATC 1 cut(s) 80
Sau96I GGNCC 2 cut(s) 169, 339
ScaI AGTACT 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 1 cut(s) 357
SfaNI GCATC 1 cut(s) 196
SinI GGWCC 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 278
Sse9I AATT 3 cut(s) 159, 196, 293
SsiI CCGC 6 cut(s) 8, 50, 167, 192, 268, 301
SspMI CTAG 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 340
TaaI ACNGT 1 cut(s) 97
TasI AATT 3 cut(s) 159, 196, 293
TatI WGTACW 1 cut(s) 213
TauI GCSGC 2 cut(s) 53, 270
TfiI GAWTC 2 cut(s) 15, 31
Tru1I TTAA 3 cut(s) 162, 365, 373
Tru9I TTAA 3 cut(s) 162, 365, 373
TseFI GTSAC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
XspI CTAG 1 cut(s) 185
ZrmI AGTACT 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.