Rmu_sc0001113.1_g000021

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001113.1
Physical Location & Seq
Reverse (-)
68661 .. 69292
632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001113.1_g000021.1.cds

Sequence Viewer

Length: 543 bp
atggttactgacaaggctgatcctcatccattccctgtttccgcaaattatgtagatgccaggtactacttggagccaatcactcaattgcaggtcagtggtatcgacaataagggctgccccacaggggtgacggcctcagaattggcacagtgggggctcacactcccaaatgaggaacttgaaaggcctgaccacgctgtgctcaatactttcaaggcctatgatcgagttgcgaccttagagattgttaatgaagagttcaatgaccaagaagaggaagaagaagagattcagctggctctagcagctttagacgatacacctctgaaggtcagggaccctactgaaaaggtcaatctcggaacaaccaacgagcctatggaagtggctattagcgcttatttagagcctaacgagaaacaaaggctcatcgacttattgctagaatacaaggattgctttgcagaaagatacgaagatatctgtcaccagacttggtatgccatcagctgccaacactctccgacaagaggcctgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

180

Amino Acids

20.44

Weight (kDa)

4.33

Isoelectric Point (pI)

37.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 82
AciI CCGC 1 cut(s) 42
AclWI GGATC 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 350
AdeI CACNNNGTG 1 cut(s) 202
AfaI GTAC 1 cut(s) 65
AfeI AGCGCT 1 cut(s) 400
AfiI CCNNNNNNNGG 4 cut(s) 127, 175, 277, 533
AgsI TTSAA 3 cut(s) 185, 217, 265
AjnI CCWGG 1 cut(s) 59
AleI CACNNNNGTG 1 cut(s) 128
AluBI AGCT 3 cut(s) 298, 311, 513
AluI AGCT 3 cut(s) 298, 311, 513
Alw21I GWGCWC 1 cut(s) 207
AlwI GGATC 1 cut(s) 14
Aor51HI AGCGCT 1 cut(s) 400
AoxI GGCC 4 cut(s) 135, 188, 219, 535
ApeKI GCWGC 3 cut(s) 117, 308, 513
Asp700I GAANNNNTTC 1 cut(s) 291
AspLEI GCGC 1 cut(s) 401
AspS9I GGNCC 1 cut(s) 340
AsuHPI GGTGA 2 cut(s) 142, 482
AvaII GGWCC 1 cut(s) 340
BanII GRGCYC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 3 cut(s) 104, 320, 500
BccI CCATC 1 cut(s) 515
BceAI ACGGC 1 cut(s) 150
BciT130I CCWGG 1 cut(s) 61
BfaI CTAG 2 cut(s) 305, 446
BfoI RGCGCY 1 cut(s) 402
BfuAI ACCTGC 1 cut(s) 82
BisI GCNGC 3 cut(s) 118, 309, 514
BlsI GCNGC 3 cut(s) 119, 310, 515
Bme1390I CCNGG 1 cut(s) 61
Bme18I GGWCC 1 cut(s) 340
BmgT120I GGNCC 1 cut(s) 340
BmiI GGNNCC 3 cut(s) 75, 341, 342
BmrFI CCNGG 1 cut(s) 61
BmsI GCATC 1 cut(s) 46
BsaBI GATNNNNATC 1 cut(s) 24
Bsc4I CCNNNNNNNGG 4 cut(s) 127, 175, 277, 533
Bse8I GATNNNNATC 1 cut(s) 24
BseBI CCWGG 1 cut(s) 61
BseGI GGATG 1 cut(s) 25
BseJI GATNNNNATC 1 cut(s) 24
BseLI CCNNNNNNNGG 4 cut(s) 127, 175, 277, 533
BseMII CTCAG 1 cut(s) 153
BseXI GCAGC 3 cut(s) 104, 320, 500
BshFI GGCC 4 cut(s) 137, 190, 221, 537
BsiHKAI GWGCWC 1 cut(s) 207
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 4 cut(s) 127, 175, 277, 533
BsmFI GGGAC 1 cut(s) 353
BsnI GGCC 4 cut(s) 137, 190, 221, 537
Bsp1286I GDGCHC 2 cut(s) 162, 207
Bsp143I GATC 2 cut(s) 19, 226
BspACI CCGC 1 cut(s) 42
BspANI GGCC 4 cut(s) 137, 190, 221, 537
BspCNI CTCAG 1 cut(s) 152
BspLI GGNNCC 3 cut(s) 75, 341, 342
BspMI ACCTGC 1 cut(s) 82
BspPI GGATC 1 cut(s) 14
BssMI GATC 2 cut(s) 19, 226
Bst2UI CCWGG 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 153
Bst6I CTCTTC 3 cut(s) 252, 270, 282
BstC8I GCNNGC 1 cut(s) 300
BstDEI CTNAG 2 cut(s) 139, 241
BstF5I GGATG 1 cut(s) 25
BstH2I RGCGCY 1 cut(s) 402
BstHHI GCGC 1 cut(s) 401
BstKTI GATC 2 cut(s) 22, 229
BstMBI GATC 2 cut(s) 19, 226
BstMWI GCNNNNNNNGC 2 cut(s) 308, 398
BstNI CCWGG 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 59
BstV1I GCAGC 3 cut(s) 104, 320, 500
BsuRI GGCC 4 cut(s) 137, 190, 221, 537
BtsCI GGATG 1 cut(s) 25
BtsIMutI CAGTG 2 cut(s) 103, 158
BveI ACCTGC 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 300
CfoI GCGC 1 cut(s) 401
Cfr13I GGNCC 1 cut(s) 340
Csp6I GTAC 1 cut(s) 64
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 2 cut(s) 139, 241
DpnI GATC 2 cut(s) 21, 228
DpnII GATC 2 cut(s) 19, 226
DraIII CACNNNGTG 1 cut(s) 202
Eam1104I CTCTTC 3 cut(s) 252, 270, 282
EarI CTCTTC 3 cut(s) 252, 270, 282
Eco147I AGGCCT 3 cut(s) 190, 221, 537
Eco24I GRGCYC 1 cut(s) 162
Eco32I GATATC 1 cut(s) 484
Eco47I GGWCC 1 cut(s) 340
Eco47III AGCGCT 1 cut(s) 400
Eco57I CTGAAG 1 cut(s) 350
EcoO109I RGGNCCY 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 59
EcoRV GATATC 1 cut(s) 484
EcoT38I GRGCYC 1 cut(s) 162
FaiI YATR 4 cut(s) 51, 225, 383, 504
FalI AAGNNNNNCTT 2 cut(s) 446, 478
FaqI GGGAC 1 cut(s) 353
Fnu4HI GCNGC 3 cut(s) 118, 309, 514
FokI GGATG 1 cut(s) 12
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 3 cut(s) 118, 309, 514
FspBI CTAG 2 cut(s) 305, 446
GlaI GCGC 1 cut(s) 400
GluI GCNGC 3 cut(s) 118, 309, 514
HaeII RGCGCY 1 cut(s) 402
HaeIII GGCC 4 cut(s) 137, 190, 221, 537
HhaI GCGC 1 cut(s) 401
Hin6I GCGC 1 cut(s) 399
HinP1I GCGC 1 cut(s) 399
HinfI GANTC 1 cut(s) 292
HphI GGTGA 2 cut(s) 142, 482
Hpy188I TCNGA 4 cut(s) 142, 330, 365, 528
HpyAV CCTTC 1 cut(s) 325
HpyCH4III ACNGT 1 cut(s) 153
HpyCH4V TGCA 2 cut(s) 91, 467
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 398
HpyF3I CTNAG 2 cut(s) 139, 241
HspAI GCGC 1 cut(s) 399
KflI GGGWCCC 1 cut(s) 340
Kzo9I GATC 2 cut(s) 19, 226
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 9 cut(s) 46, 48, 73, 77, 111, 204, 284, 322, 506
Lsp1109I GCAGC 3 cut(s) 104, 320, 500
LweI GCATC 1 cut(s) 46
MaeI CTAG 2 cut(s) 305, 446
MaeIII GTNAC 3 cut(s) 4, 130, 488
MalI GATC 2 cut(s) 21, 228
MboI GATC 2 cut(s) 19, 226
MboII GAAGA 6 cut(s) 269, 287, 293, 296, 299, 491
MfeI CAATTG 1 cut(s) 86
MhlI GDGCHC 2 cut(s) 162, 207
MluCI AATT 3 cut(s) 46, 86, 143
MnlI CCTC 6 cut(s) 33, 148, 169, 271, 336, 527
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 128
MspA1I CMGCKG 2 cut(s) 298, 513
MspR9I CCNGG 1 cut(s) 61
MunI CAATTG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 61
MwoI GCNNNNNNNGC 2 cut(s) 308, 398
NdeII GATC 2 cut(s) 19, 226
NlaIV GGNNCC 3 cut(s) 75, 341, 342
NmuCI GTSAC 2 cut(s) 130, 488
OliI CACNNNNGTG 1 cut(s) 128
PceI AGGCCT 3 cut(s) 190, 221, 537
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 1 cut(s) 292
PkrI GCNGC 3 cut(s) 119, 310, 515
PpuMI RGGWCCY 1 cut(s) 340
Psp5II RGGWCCY 1 cut(s) 340
Psp6I CCWGG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 3 cut(s) 75, 341, 342
PspPI GGNCC 1 cut(s) 340
PspPPI RGGWCCY 1 cut(s) 340
PvuII CAGCTG 2 cut(s) 298, 513
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 3 cut(s) 118, 309, 514
Sau3AI GATC 2 cut(s) 19, 226
Sau96I GGNCC 1 cut(s) 340
ScrFI CCNGG 1 cut(s) 61
SduI GDGCHC 2 cut(s) 162, 207
SetI ASST 9 cut(s) 65, 96, 242, 300, 313, 328, 336, 357, 515
SfaNI GCATC 1 cut(s) 46
SinI GGWCC 1 cut(s) 340
SmiMI CAYNNNNRTG 1 cut(s) 128
Sse9I AATT 3 cut(s) 46, 86, 143
SseBI AGGCCT 3 cut(s) 190, 221, 537
SsiI CCGC 1 cut(s) 42
SspMI CTAG 2 cut(s) 305, 446
StuI AGGCCT 3 cut(s) 190, 221, 537
StyD4I CCNGG 1 cut(s) 59
TaaI ACNGT 1 cut(s) 153
TaqI TCGA 3 cut(s) 105, 229, 435
TasI AATT 3 cut(s) 46, 86, 143
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 2 cut(s) 103, 158
TseFI GTSAC 2 cut(s) 130, 488
TseI GCWGC 3 cut(s) 117, 308, 513
Tsp45I GTSAC 2 cut(s) 130, 488
TspDTI ATGAA 1 cut(s) 270
TspRI CASTG 2 cut(s) 103, 158
VpaK11BI GGWCC 1 cut(s) 340
XcmI CCANNNNNNNNNTGG 2 cut(s) 67, 379
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 2 cut(s) 305, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.