Rmu_sc0009968.1_g000001

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009968.1
Physical Location & Seq
Forward (+)
122 .. 600
479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009968.1_g000001.1.cds

Sequence Viewer

Length: 479 bp
atggattacgaccttccagaggaagggatagaggccttccattccttgtacgagaggctatcatcatacttggtggaaaaagaggcctatgatcgagtcgcgaccttagaaattgttaatgaagagttctctgaccaagaagaagaggaagaagagattcagattgctccagcggcattagatgacacacctccgaaggttagggaccctactgagaaagtcaatctgggaacaactgatgagcctatagaagtggctatcagcgcttacttagagcctagagagaaacagaggctcgtcgacttattgttggaattcaaggattgcttcgtggaaaaatacgaagacatgccaggcctatcaccagacttagcatgccaccaactaccaacgctgcttgataagaggcctgtgaagcaagagccgctaagaatgaactcggaaacccaagttctggtcaaagaggaagtcgaaaagat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

159

Amino Acids

18.37

Weight (kDa)

4.26

Isoelectric Point (pI)

64.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 454
AccI GTMKAC 1 cut(s) 300
AccII CGCG 1 cut(s) 101
AciI CCGC 2 cut(s) 173, 425
AcsI RAATTY 1 cut(s) 314
AfaI GTAC 1 cut(s) 50
AfeI AGCGCT 1 cut(s) 265
AfiI CCNNNNNNNGG 3 cut(s) 19, 23, 454
AgsI TTSAA 1 cut(s) 319
AjnI CCWGG 1 cut(s) 352
Aor51HI AGCGCT 1 cut(s) 265
AoxI GGCC 4 cut(s) 33, 84, 355, 407
ApeKI GCWGC 1 cut(s) 394
ApoI RAATTY 1 cut(s) 314
ArsI GACNNNNNNTTYG 1 cut(s) 453
Asp700I GAANNNNTTC 1 cut(s) 156
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 354
AvaII GGWCC 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 351
BbvI GCAGC 1 cut(s) 381
BciT130I CCWGG 1 cut(s) 354
BfaI CTAG 1 cut(s) 279
BfmI CTRYAG 1 cut(s) 246
BfoI RGCGCY 1 cut(s) 267
BisI GCNGC 3 cut(s) 174, 395, 425
BlsI GCNGC 3 cut(s) 175, 396, 426
Bme1390I CCNGG 1 cut(s) 354
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 2 cut(s) 206, 207
BmrFI CCNGG 1 cut(s) 354
BpiI GAAGAC 1 cut(s) 351
BpmI CTGGAG 1 cut(s) 153
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 23, 454
BseBI CCWGG 1 cut(s) 354
BseLI CCNNNNNNNGG 3 cut(s) 19, 23, 454
BseMII CTCAG 1 cut(s) 204
BseXI GCAGC 1 cut(s) 381
Bsh1236I CGCG 1 cut(s) 101
BshFI GGCC 4 cut(s) 35, 86, 357, 409
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 3 cut(s) 19, 23, 454
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 4 cut(s) 35, 86, 357, 409
Bsp143I GATC 1 cut(s) 91
Bsp68I TCGCGA 1 cut(s) 101
BspACI CCGC 2 cut(s) 173, 425
BspANI GGCC 4 cut(s) 35, 86, 357, 409
BspCNI CTCAG 1 cut(s) 205
BspFNI CGCG 1 cut(s) 101
BspLI GGNNCC 2 cut(s) 206, 207
BssMI GATC 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 354
Bst6I CTCTTC 3 cut(s) 117, 138, 147
BstC8I GCNNGC 1 cut(s) 376
BstDEI CTNAG 5 cut(s) 106, 213, 271, 370, 428
BstENI CCTNNNNNAGG 1 cut(s) 17
BstFNI CGCG 1 cut(s) 101
BstH2I RGCGCY 1 cut(s) 267
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 4 cut(s) 173, 263, 415, 424
BstNI CCWGG 1 cut(s) 354
BstNSI RCATGY 2 cut(s) 352, 378
BstSCI CCNGG 1 cut(s) 352
BstSFI CTRYAG 1 cut(s) 246
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 381
BstV2I GAAGAC 1 cut(s) 351
BsuRI GGCC 4 cut(s) 35, 86, 357, 409
BtuMI TCGCGA 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 376
CfoI GCGC 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 205
Csp6I GTAC 1 cut(s) 49
CviAII CATG 2 cut(s) 349, 375
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 5 cut(s) 106, 213, 271, 370, 428
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
Eam1104I CTCTTC 3 cut(s) 117, 138, 147
EarI CTCTTC 3 cut(s) 117, 138, 147
Eco147I AGGCCT 4 cut(s) 35, 86, 357, 409
Eco47I GGWCC 1 cut(s) 205
Eco47III AGCGCT 1 cut(s) 265
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoO109I RGGNCCY 1 cut(s) 205
EcoRI GAATTC 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 352
FaeI CATG 2 cut(s) 352, 378
FaiI YATR 5 cut(s) 67, 90, 248, 350, 376
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FaqI GGGAC 1 cut(s) 218
FatI CATG 2 cut(s) 348, 374
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 3 cut(s) 174, 395, 425
Fsp4HI GCNGC 3 cut(s) 174, 395, 425
FspBI CTAG 1 cut(s) 279
GlaI GCGC 1 cut(s) 265
GluI GCNGC 3 cut(s) 174, 395, 425
GsuI CTGGAG 1 cut(s) 153
HaeII RGCGCY 1 cut(s) 267
HaeIII GGCC 4 cut(s) 35, 86, 357, 409
HhaI GCGC 1 cut(s) 266
Hin1II CATG 2 cut(s) 352, 378
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 2 cut(s) 96, 157
HphI GGTGA 1 cut(s) 354
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 4 cut(s) 133, 162, 195, 442
Hpy188III TCNNGA 2 cut(s) 17, 100
Hpy8I GTNNAC 1 cut(s) 301
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 4 cut(s) 17, 23, 46, 190
HpyF10VI GCNNNNNNNGC 4 cut(s) 173, 263, 415, 424
HpyF3I CTNAG 5 cut(s) 106, 213, 271, 370, 428
Hsp92II CATG 2 cut(s) 352, 378
HspAI GCGC 1 cut(s) 264
KflI GGGWCCC 1 cut(s) 205
Kzo9I GATC 1 cut(s) 91
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 8 cut(s) 30, 183, 212, 339, 366, 378, 423, 440
Lsp1109I GCAGC 1 cut(s) 381
MaeI CTAG 1 cut(s) 279
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 6 cut(s) 134, 152, 155, 161, 164, 356
MluCI AATT 2 cut(s) 111, 314
MlyI GAGTC 1 cut(s) 105
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 9 cut(s) 13, 25, 48, 76, 139, 201, 285, 399, 457
MroXI GAANNNNTTC 1 cut(s) 156
MseI TTAA 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 354
MvnI CGCG 1 cut(s) 101
MwoI GCNNNNNNNGC 4 cut(s) 173, 263, 415, 424
NdeII GATC 1 cut(s) 91
NlaIII CATG 2 cut(s) 352, 378
NlaIV GGNNCC 2 cut(s) 206, 207
NruI TCGCGA 1 cut(s) 101
NspI RCATGY 2 cut(s) 352, 378
PaeI GCATGC 1 cut(s) 378
PceI AGGCCT 4 cut(s) 35, 86, 357, 409
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 1 cut(s) 157
PflMI CCANNNNNTGG 1 cut(s) 454
PkrI GCNGC 3 cut(s) 175, 396, 426
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PpuMI RGGWCCY 1 cut(s) 205
Psp5II RGGWCCY 1 cut(s) 205
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 206, 207
PspPI GGNCC 1 cut(s) 205
PspPPI RGGWCCY 1 cut(s) 205
RruI TCGCGA 1 cut(s) 101
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SalI GTCGAC 1 cut(s) 299
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 3 cut(s) 174, 395, 425
Sau3AI GATC 1 cut(s) 91
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 1 cut(s) 105
ScrFI CCNGG 1 cut(s) 354
SetI ASST 4 cut(s) 15, 107, 193, 201
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 1 cut(s) 205
SphI GCATGC 1 cut(s) 378
Sse9I AATT 2 cut(s) 111, 314
SseBI AGGCCT 4 cut(s) 35, 86, 357, 409
SsiI CCGC 2 cut(s) 173, 425
SspMI CTAG 1 cut(s) 279
StuI AGGCCT 4 cut(s) 35, 86, 357, 409
StyD4I CCNGG 1 cut(s) 352
TaqI TCGA 3 cut(s) 94, 300, 471
TasI AATT 2 cut(s) 111, 314
TauI GCSGC 2 cut(s) 176, 427
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TseI GCWGC 1 cut(s) 394
TspDTI ATGAA 2 cut(s) 135, 449
Van91I CCANNNNNTGG 1 cut(s) 454
VpaK11BI GGWCC 1 cut(s) 205
XagI CCTNNNNNAGG 1 cut(s) 17
XapI RAATTY 1 cut(s) 314
XceI RCATGY 2 cut(s) 352, 378
XmiI GTMKAC 1 cut(s) 300
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.