Rroxscaffold_3G00259080

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000176
Physical Location & Seq
Forward (+)
53455615 .. 53469345
13731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00259080.1

Sequence Viewer

Length: 555 bp
ATGCCCTTCCGGTCGCCGCTCGGGACTGCGAAGAAGCCGAGGAAAGTAGTGCACAGCCCTTGCAGATCACATCGGCAGTCACGAGACCGAAAGAGAAAATCCGGTCTACGTCCCTCACGCTCAAGAACTTCGCGGGACGATAACAAAGACCCTAGGATTACTTTTCTTAAGCATCAAGGTTGGCCCGCGAGAGGAGTTTATGCTTTCTTTGTAACAGATTGTTATGCGGCCTACGGTGCTATTCTCGGGCGAGACCGGATCCACCGGAGTTATTGTGTTCCATCCACTCTCCACCAGGAACTAGTTATGTGGAACGAGGAGACAGATAAAGCCGAGGTGATTAAGGCGGACCCTCGTCCATTCCCGGTGTCCGTGAATTATGTAGATGCCGGGTACTATTTGGAGCCTATCACTCCATTGCAGGTCGGTGGCATCGATAACAAAGGCCGCCCCATTGGGGTGACGACCTCCGAATTGGCACGGTGGGGGCTTACGCTAGCAAAAGAAGGCTTGGAAAGGCCCGGCCACGCCGTGCCCAAACCCTTAAATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

184

Amino Acids

20.8

Weight (kDa)

9.96

Isoelectric Point (pI)

57.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 412
AccBSI CCGCTC 1 cut(s) 19
AccI GTMKAC 1 cut(s) 106
AccII CGCG 2 cut(s) 133, 188
AciI CCGC 6 cut(s) 17, 133, 186, 227, 347, 448
AclWI GGATC 2 cut(s) 253, 266
AcoI YGGCCR 1 cut(s) 523
AdeI CACNNNGTG 1 cut(s) 532
AfaI GTAC 1 cut(s) 395
AfiI CCNNNNNNNGG 2 cut(s) 191, 457
AflII CTTAAG 1 cut(s) 167
AhlI ACTAGT 1 cut(s) 301
AjnI CCWGG 1 cut(s) 294
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 3 cut(s) 78, 246, 314
Alw44I GTGCAC 1 cut(s) 50
AlwI GGATC 2 cut(s) 253, 266
Ama87I CYCGRG 2 cut(s) 20, 245
AoxI GGCC 5 cut(s) 182, 228, 445, 518, 523
ApaLI GTGCAC 1 cut(s) 50
AspA2I CCTAGG 1 cut(s) 152
AspS9I GGNCC 3 cut(s) 183, 349, 519
AsuC2I CCSGG 3 cut(s) 365, 391, 522
AsuHPI GGTGA 2 cut(s) 349, 472
AsuNHI GCTAGC 1 cut(s) 496
AvaI CYCGRG 2 cut(s) 20, 245
AvaII GGWCC 1 cut(s) 349
AvrII CCTAGG 1 cut(s) 152
BaeGI GKGCMC 2 cut(s) 54, 537
BamHI GGATCC 1 cut(s) 258
BauI CACGAG 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 54
BccI CCATC 1 cut(s) 289
BceAI ACGGC 1 cut(s) 515
BciT130I CCWGG 1 cut(s) 296
BcnI CCSGG 3 cut(s) 365, 391, 522
BcoDI GTCTC 3 cut(s) 78, 246, 314
BcuI ACTAGT 1 cut(s) 301
BfaI CTAG 3 cut(s) 153, 302, 497
BfrI CTTAAG 1 cut(s) 167
BfuAI ACCTGC 1 cut(s) 412
BisI GCNGC 3 cut(s) 17, 228, 448
BlnI CCTAGG 1 cut(s) 152
BlsI GCNGC 3 cut(s) 18, 229, 449
Bme1390I CCNGG 4 cut(s) 296, 365, 391, 522
Bme18I GGWCC 1 cut(s) 349
BmeT110I CYCGRG 2 cut(s) 20, 245
BmgT120I GGNCC 3 cut(s) 183, 349, 519
BmiI GGNNCC 3 cut(s) 260, 351, 405
BmrFI CCNGG 4 cut(s) 296, 365, 391, 522
BmsI GCATC 3 cut(s) 181, 376, 441
BmtI GCTAGC 1 cut(s) 500
BoxI GACNNNNGTC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 106
BpuMI CCSGG 3 cut(s) 365, 391, 522
Bsa29I ATCGAT 1 cut(s) 435
BsaI GGTCTC 2 cut(s) 78, 246
BsaJI CCNNGG 3 cut(s) 38, 152, 333
BsaWI WCCGGW 4 cut(s) 9, 101, 255, 264
BsaXI ACNNNNNCTCC 2 cut(s) 259, 289
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 457
Bse3DI GCAATG 1 cut(s) 416
BseBI CCWGG 1 cut(s) 296
BseCI ATCGAT 1 cut(s) 435
BseDI CCNNGG 3 cut(s) 38, 152, 333
BseGI GGATG 1 cut(s) 281
BseLI CCNNNNNNNGG 2 cut(s) 191, 457
BseMI GCAATG 1 cut(s) 416
BseRI GAGGAG 2 cut(s) 207, 332
BseSI GKGCMC 2 cut(s) 54, 537
Bsh1236I CGCG 2 cut(s) 133, 188
Bsh1285I CGRYCG 1 cut(s) 14
BshFI GGCC 5 cut(s) 184, 230, 447, 520, 525
BshVI ATCGAT 1 cut(s) 435
BsiEI CGRYCG 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 54
BsiHKCI CYCGRG 2 cut(s) 20, 245
BsiSI CCGG 7 cut(s) 10, 102, 256, 265, 365, 390, 522
BslFI GGGAC 3 cut(s) 37, 96, 149
BslI CCNNNNNNNGG 2 cut(s) 191, 457
BsmAI GTCTC 3 cut(s) 78, 246, 314
BsmFI GGGAC 3 cut(s) 37, 96, 149
BsnI GGCC 5 cut(s) 184, 230, 447, 520, 525
Bso31I GGTCTC 2 cut(s) 78, 246
BsoBI CYCGRG 2 cut(s) 20, 245
Bsp1286I GDGCHC 2 cut(s) 54, 537
Bsp143I GATC 2 cut(s) 65, 258
BspACI CCGC 6 cut(s) 17, 133, 186, 227, 347, 448
BspANI GGCC 5 cut(s) 184, 230, 447, 520, 525
BspDI ATCGAT 1 cut(s) 435
BspFNI CGCG 2 cut(s) 133, 188
BspLI GGNNCC 3 cut(s) 260, 351, 405
BspMI ACCTGC 1 cut(s) 412
BspOI GCTAGC 1 cut(s) 500
BspPI GGATC 2 cut(s) 253, 266
BspTI CTTAAG 1 cut(s) 167
BspTNI GGTCTC 2 cut(s) 78, 246
BsrBI CCGCTC 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 416
BssECI CCNNGG 3 cut(s) 38, 152, 333
BssMI GATC 2 cut(s) 65, 258
BssSI CACGAG 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 152
Bst2BI CACGAG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 2 cut(s) 236, 483
BstAFI CTTAAG 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 186, 498
BstF5I GGATG 1 cut(s) 281
BstFNI CGCG 2 cut(s) 133, 188
BstKTI GATC 2 cut(s) 68, 261
BstMAI GTCTC 3 cut(s) 78, 246, 314
BstMBI GATC 2 cut(s) 65, 258
BstMCI CGRYCG 1 cut(s) 14
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 296
BstPAI GACNNNNGTC 1 cut(s) 354
BstSCI CCNGG 4 cut(s) 294, 363, 389, 520
BstSLI GKGCMC 2 cut(s) 54, 537
BstUI CGCG 2 cut(s) 133, 188
BstX2I RGATCY 1 cut(s) 258
BstYI RGATCY 1 cut(s) 258
Bsu15I ATCGAT 1 cut(s) 435
BsuRI GGCC 5 cut(s) 184, 230, 447, 520, 525
BsuTUI ATCGAT 1 cut(s) 435
BtsCI GGATG 1 cut(s) 281
BveI ACCTGC 1 cut(s) 412
Cac8I GCNNGC 2 cut(s) 186, 498
Cfr13I GGNCC 3 cut(s) 183, 349, 519
ClaI ATCGAT 1 cut(s) 435
Csp6I GTAC 1 cut(s) 394
CviQI GTAC 1 cut(s) 394
DpnI GATC 2 cut(s) 67, 260
DpnII GATC 2 cut(s) 65, 258
DraIII CACNNNGTG 1 cut(s) 532
EaeI YGGCCR 1 cut(s) 523
EciI GGCGGA 1 cut(s) 362
Eco130I CCWWGG 1 cut(s) 152
Eco31I GGTCTC 2 cut(s) 78, 246
Eco47I GGWCC 1 cut(s) 349
Eco88I CYCGRG 2 cut(s) 20, 245
EcoRII CCWGG 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 152
FaiI YATR 4 cut(s) 201, 225, 308, 381
FaqI GGGAC 3 cut(s) 37, 96, 149
FauI CCCGC 2 cut(s) 126, 193
FblI GTMKAC 1 cut(s) 106
Fnu4HI GCNGC 3 cut(s) 17, 228, 448
FokI GGATG 1 cut(s) 268
Fsp4HI GCNGC 3 cut(s) 17, 228, 448
FspBI CTAG 3 cut(s) 153, 302, 497
GluI GCNGC 3 cut(s) 17, 228, 448
HaeIII GGCC 5 cut(s) 184, 230, 447, 520, 525
HapII CCGG 7 cut(s) 10, 102, 256, 265, 365, 390, 522
HpaII CCGG 7 cut(s) 10, 102, 256, 265, 365, 390, 522
HphI GGTGA 2 cut(s) 349, 472
Hpy166II GTNNAC 2 cut(s) 52, 107
Hpy188I TCNGA 1 cut(s) 472
Hpy188III TCNNGA 3 cut(s) 22, 81, 123
Hpy8I GTNNAC 2 cut(s) 52, 107
HpyAV CCTTC 2 cut(s) 16, 500
HpyCH4III ACNGT 2 cut(s) 236, 483
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 3 cut(s) 52, 63, 421
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpySE526I ACGT 1 cut(s) 109
Kzo9I GATC 2 cut(s) 65, 258
LmnI GCTCC 1 cut(s) 403
LweI GCATC 3 cut(s) 181, 376, 441
MaeI CTAG 3 cut(s) 153, 302, 497
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 3 cut(s) 78, 211, 460
MalI GATC 2 cut(s) 67, 260
MbiI CCGCTC 1 cut(s) 19
MboI GATC 2 cut(s) 65, 258
MboII GAAGA 1 cut(s) 43
MflI RGATCY 1 cut(s) 258
MhlI GDGCHC 2 cut(s) 54, 537
MluCI AATT 2 cut(s) 376, 473
MnlI CCTC 7 cut(s) 33, 124, 185, 310, 328, 363, 478
MseI TTAA 4 cut(s) 168, 342, 545, 553
MslI CAYNNNNRTG 1 cut(s) 458
MspCI CTTAAG 1 cut(s) 167
MspI CCGG 7 cut(s) 10, 102, 256, 265, 365, 390, 522
MspR9I CCNGG 4 cut(s) 296, 365, 391, 522
MvaI CCWGG 1 cut(s) 296
MvnI CGCG 2 cut(s) 133, 188
MwoI GCNNNNNNNGC 1 cut(s) 236
NciI CCSGG 3 cut(s) 365, 391, 522
NdeII GATC 2 cut(s) 65, 258
NheI GCTAGC 1 cut(s) 496
NlaIV GGNNCC 3 cut(s) 260, 351, 405
NmeAIII GCCGAG 2 cut(s) 63, 358
NmuCI GTSAC 2 cut(s) 78, 460
PcsI WCGNNNNNNNCGW 2 cut(s) 79, 432
PkrI GCNGC 3 cut(s) 18, 229, 449
PshAI GACNNNNGTC 1 cut(s) 354
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 3 cut(s) 260, 351, 405
PspPI GGNCC 3 cut(s) 183, 349, 519
PsuI RGATCY 1 cut(s) 258
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
RseI CAYNNNNRTG 1 cut(s) 458
SaqAI TTAA 4 cut(s) 168, 342, 545, 553
SatI GCNGC 3 cut(s) 17, 228, 448
Sau3AI GATC 2 cut(s) 65, 258
Sau96I GGNCC 3 cut(s) 183, 349, 519
ScrFI CCNGG 4 cut(s) 296, 365, 391, 522
SduI GDGCHC 2 cut(s) 54, 537
SetI ASST 5 cut(s) 112, 181, 339, 426, 470
SfaNI GCATC 3 cut(s) 181, 376, 441
SinI GGWCC 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 458
SmlI CTYRAG 2 cut(s) 121, 167
SmoI CTYRAG 2 cut(s) 121, 167
SpeI ACTAGT 1 cut(s) 301
Sse9I AATT 2 cut(s) 376, 473
SsiI CCGC 6 cut(s) 17, 133, 186, 227, 347, 448
SspMI CTAG 3 cut(s) 153, 302, 497
StyD4I CCNGG 4 cut(s) 294, 363, 389, 520
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 2 cut(s) 236, 483
TaiI ACGT 1 cut(s) 112
TaqI TCGA 1 cut(s) 435
TaqII GACCGA 1 cut(s) 102
TasI AATT 2 cut(s) 376, 473
TauI GCSGC 3 cut(s) 19, 230, 450
Tru1I TTAA 4 cut(s) 168, 342, 545, 553
Tru9I TTAA 4 cut(s) 168, 342, 545, 553
TseFI GTSAC 2 cut(s) 78, 460
Tsp45I GTSAC 2 cut(s) 78, 460
TspGWI ACGGA 1 cut(s) 361
Vha464I CTTAAG 1 cut(s) 167
VneI GTGCAC 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 349
XmaJI CCTAGG 1 cut(s) 152
XmiI GTMKAC 1 cut(s) 106
XspI CTAG 3 cut(s) 153, 302, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.