Rroxscaffold_5G00339240

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
7617291 .. 7618360
1070 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00339240.1

Sequence Viewer

Length: 402 bp
ATGAGCTTTACAAGGCCTACACCTGCTATGGTCCGGCACATGAGACCTCTATATATCACGGCAGAGATTGATAGCACCAAGGTCGGCAAGATCATGGAAGAAGAAGAGATCCAACTCATTCCGGCGGCGTTGGACAACACGCCTCTAAAGGTTAGGGATCCCACCGAGAAGGTCAATCTTAGGACGGTTGATGAGCCTATCGAGGTGGCTATCGGTGCTTATTTAGAGCCTAAAGAGAGACGAGAGGCTCGTCGACTTATTGCTTGGAATTCAAGGATTGCTTTGCGAGAGAAGTATGAGGACATGTCGGGTTTGTCACCGGACTTGGTATGTCATCGGCACCCAACATCGCACGATATGAGGCCCGTGAAACAAGAGCGAACGCCGAGACCCAAGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

133

Amino Acids

15.4

Weight (kDa)

8.79

Isoelectric Point (pI)

62.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 31
Acc36I ACCTGC 1 cut(s) 31
AccB1I GGYRCC 1 cut(s) 339
AccI GTMKAC 1 cut(s) 253
AciI CCGC 1 cut(s) 125
AclWI GGATC 3 cut(s) 103, 152, 165
AcsI RAATTY 1 cut(s) 268
AflIII ACRYGT 1 cut(s) 303
AgsI TTSAA 1 cut(s) 273
AluBI AGCT 1 cut(s) 6
AluI AGCT 1 cut(s) 6
Alw26I GTCTC 3 cut(s) 37, 232, 382
AlwI GGATC 3 cut(s) 103, 152, 165
AoxI GGCC 2 cut(s) 14, 362
ApoI RAATTY 1 cut(s) 268
AspS9I GGNCC 2 cut(s) 31, 363
AsuHPI GGTGA 1 cut(s) 309
AvaII GGWCC 1 cut(s) 31
BamHI GGATCC 1 cut(s) 157
BanI GGYRCC 1 cut(s) 339
BceAI ACGGC 1 cut(s) 75
BcgI CGANNNNNNTGC 2 cut(s) 64, 98
BcoDI GTCTC 3 cut(s) 37, 232, 382
BfaI CTAG 1 cut(s) 400
BfuAI ACCTGC 1 cut(s) 31
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 2 cut(s) 31, 363
BmiI GGNNCC 2 cut(s) 159, 341
BoxI GACNNNNGTC 1 cut(s) 394
BsaI GGTCTC 2 cut(s) 37, 382
BsaJI CCNNGG 1 cut(s) 78
BsaWI WCCGGW 1 cut(s) 319
BseDI CCNNGG 1 cut(s) 78
BshFI GGCC 2 cut(s) 16, 364
BshNI GGYRCC 1 cut(s) 339
BsiSI CCGG 3 cut(s) 34, 122, 320
BsmAI GTCTC 3 cut(s) 37, 232, 382
BsmBI CGTCTC 1 cut(s) 232
BsnI GGCC 2 cut(s) 16, 364
Bso31I GGTCTC 2 cut(s) 37, 382
Bsp143I GATC 3 cut(s) 90, 108, 157
BspACI CCGC 1 cut(s) 125
BspANI GGCC 2 cut(s) 16, 364
BspLI GGNNCC 2 cut(s) 159, 341
BspMI ACCTGC 1 cut(s) 31
BspPI GGATC 3 cut(s) 103, 152, 165
BspT107I GGYRCC 1 cut(s) 339
BspTNI GGTCTC 2 cut(s) 37, 382
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 3 cut(s) 90, 108, 157
BssT1I CCWWGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 179
BstKTI GATC 3 cut(s) 93, 111, 160
BstMAI GTCTC 3 cut(s) 37, 232, 382
BstMBI GATC 3 cut(s) 90, 108, 157
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNSI RCATGY 1 cut(s) 307
BstPAI GACNNNNGTC 1 cut(s) 394
BstX2I RGATCY 2 cut(s) 108, 157
BstYI RGATCY 2 cut(s) 108, 157
BsuRI GGCC 2 cut(s) 16, 364
BtgZI GCGATG 1 cut(s) 333
BveI ACCTGC 1 cut(s) 31
Cfr13I GGNCC 2 cut(s) 31, 363
CviAII CATG 3 cut(s) 40, 94, 304
CviJI RGCY 7 cut(s) 6, 16, 196, 209, 229, 248, 364
CviKI_1 RGCY 7 cut(s) 6, 16, 196, 209, 229, 248, 364
DdeI CTNAG 1 cut(s) 179
DpnI GATC 3 cut(s) 92, 110, 159
DpnII GATC 3 cut(s) 90, 108, 157
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 78
Eco147I AGGCCT 1 cut(s) 16
Eco31I GGTCTC 2 cut(s) 37, 382
Eco47I GGWCC 1 cut(s) 31
EcoRI GAATTC 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 3 cut(s) 43, 97, 307
FaiI YATR 9 cut(s) 29, 41, 52, 54, 95, 297, 305, 331, 359
FalI AAGNNNNNCTT 2 cut(s) 265, 297
FatI CATG 3 cut(s) 39, 93, 303
FblI GTMKAC 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 126
FspBI CTAG 1 cut(s) 400
GluI GCNGC 1 cut(s) 126
HaeIII GGCC 2 cut(s) 16, 364
HapII CCGG 3 cut(s) 34, 122, 320
Hin1II CATG 3 cut(s) 43, 97, 307
HincII GTYRAC 1 cut(s) 254
HindII GTYRAC 1 cut(s) 254
HpaII CCGG 3 cut(s) 34, 122, 320
HphI GGTGA 1 cut(s) 309
Hpy166II GTNNAC 1 cut(s) 254
Hpy8I GTNNAC 1 cut(s) 254
Hpy99I CGWCG 1 cut(s) 255
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 1 cut(s) 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 1 cut(s) 179
Hsp92II CATG 3 cut(s) 43, 97, 307
Kzo9I GATC 3 cut(s) 90, 108, 157
LpnPI CCDG 4 cut(s) 36, 47, 135, 333
MaeI CTAG 1 cut(s) 400
MaeIII GTNAC 1 cut(s) 315
MalI GATC 3 cut(s) 92, 110, 159
MboI GATC 3 cut(s) 90, 108, 157
MboII GAAGA 3 cut(s) 110, 113, 116
MflI RGATCY 2 cut(s) 108, 157
MluCI AATT 1 cut(s) 268
MmeI TCCRAC 2 cut(s) 111, 136
MnlI CCTC 6 cut(s) 57, 153, 196, 238, 292, 354
MspI CCGG 3 cut(s) 34, 122, 320
MwoI GCNNNNNNNGC 1 cut(s) 215
NdeII GATC 3 cut(s) 90, 108, 157
NlaIII CATG 3 cut(s) 43, 97, 307
NlaIV GGNNCC 2 cut(s) 159, 341
NmuCI GTSAC 1 cut(s) 315
NspI RCATGY 1 cut(s) 307
PaqCI CACCTGC 1 cut(s) 31
PceI AGGCCT 1 cut(s) 16
PciI ACATGT 1 cut(s) 303
PcsI WCGNNNNNNNCGW 1 cut(s) 247
PkrI GCNGC 1 cut(s) 127
PscI ACATGT 1 cut(s) 303
PshAI GACNNNNGTC 1 cut(s) 394
PspN4I GGNNCC 2 cut(s) 159, 341
PspPI GGNCC 2 cut(s) 31, 363
PsuI RGATCY 2 cut(s) 108, 157
SalI GTCGAC 1 cut(s) 252
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 3 cut(s) 90, 108, 157
Sau96I GGNCC 2 cut(s) 31, 363
SetI ASST 7 cut(s) 8, 25, 49, 84, 153, 174, 207
SinI GGWCC 1 cut(s) 31
Sse9I AATT 1 cut(s) 268
SseBI AGGCCT 1 cut(s) 16
SsiI CCGC 1 cut(s) 125
SspMI CTAG 1 cut(s) 400
StuI AGGCCT 1 cut(s) 16
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 1 cut(s) 187
TaqI TCGA 2 cut(s) 201, 253
TasI AATT 1 cut(s) 268
TauI GCSGC 1 cut(s) 128
TseFI GTSAC 1 cut(s) 315
Tsp45I GTSAC 1 cut(s) 315
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 1 cut(s) 268
XceI RCATGY 1 cut(s) 307
XmiI GTMKAC 1 cut(s) 253
XspI CTAG 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.