Rmu_sc0010090.1_g000011

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010090.1
OG0000176
Physical Location & Seq
Reverse (-)
35949 .. 38140
2192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010090.1_g000011.1.cds

Sequence Viewer

Length: 345 bp
atggggtgtccattccggcgaaattggacaaatcggagtcgtcttgttgcttcgcggttcgagtcgattcttcccagtgagggagtgacggcgtcggagaccgtggcgatgtggtcgaggctcattgacttgctgcaagaatataaagattgttttgcggagaaatatgaagatatgccaggcctgtcactcgacttcatttgccaccagctaccaacattgcctgacaagagacctattaagcaagagcctcgacgaatgaactcggagaccccggtcctagtcaaagaggaggttgagaagatgcacaagtccggaattatcagggtggtcaaatataactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

114

Amino Acids

13.31

Weight (kDa)

8.49

Isoelectric Point (pI)

76.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 55
AccIII TCCGGA 1 cut(s) 314
AciI CCGC 2 cut(s) 55, 158
AcyI GRCGYC 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 80
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
Alw26I GTCTC 3 cut(s) 92, 226, 263
Aor13HI TCCGGA 1 cut(s) 314
AoxI GGCC 1 cut(s) 181
ApeKI GCWGC 1 cut(s) 133
AspS9I GGNCC 1 cut(s) 277
AsuC2I CCSGG 1 cut(s) 275
AvaII GGWCC 1 cut(s) 277
BbvI GCAGC 1 cut(s) 120
BceAI ACGGC 1 cut(s) 105
BcgI CGANNNNNNTGC 2 cut(s) 233, 267
BciT130I CCWGG 1 cut(s) 180
BcnI CCSGG 1 cut(s) 275
BcoDI GTCTC 3 cut(s) 92, 226, 263
BfaI CTAG 2 cut(s) 281, 343
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
Bme1390I CCNGG 2 cut(s) 180, 275
Bme18I GGWCC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 277
BmrFI CCNGG 2 cut(s) 180, 275
BmrI ACTGGG 1 cut(s) 69
BmsI GCATC 1 cut(s) 294
BmuI ACTGGG 1 cut(s) 69
BoxI GACNNNNGTC 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 275
BsaHI GRCGYC 1 cut(s) 92
BsaI GGTCTC 3 cut(s) 92, 226, 263
BsaJI CCNNGG 2 cut(s) 102, 273
BsaWI WCCGGW 1 cut(s) 314
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 75
Bse3DI GCAATG 1 cut(s) 218
BseAI TCCGGA 1 cut(s) 314
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 2 cut(s) 102, 273
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMI GCAATG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 75
BseRI GAGGAG 1 cut(s) 305
BseXI GCAGC 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 55
BshFI GGCC 1 cut(s) 183
BsiSI CCGG 3 cut(s) 16, 275, 315
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 3 cut(s) 92, 226, 263
BsnI GGCC 1 cut(s) 183
Bso31I GGTCTC 3 cut(s) 92, 226, 263
Bsp13I TCCGGA 1 cut(s) 314
BspACI CCGC 2 cut(s) 55, 158
BspANI GGCC 1 cut(s) 183
BspEI TCCGGA 1 cut(s) 314
BspFNI CGCG 1 cut(s) 55
BspTNI GGTCTC 3 cut(s) 92, 226, 263
BsrDI GCAATG 1 cut(s) 218
BsrI ACTGG 1 cut(s) 75
BssECI CCNNGG 2 cut(s) 102, 273
BssNI GRCGYC 1 cut(s) 92
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 103
BstACI GRCGYC 1 cut(s) 92
BstDSI CCRYGG 1 cut(s) 102
BstFNI CGCG 1 cut(s) 55
BstMAI GTCTC 3 cut(s) 92, 226, 263
BstNI CCWGG 1 cut(s) 180
BstPAI GACNNNNGTC 1 cut(s) 275
BstSCI CCNGG 2 cut(s) 178, 273
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 120
BsuRI GGCC 1 cut(s) 183
BtgI CCRYGG 1 cut(s) 102
BtgZI GCGATG 1 cut(s) 122
BtsIMutI CAGTG 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 277
CseI GACGC 1 cut(s) 81
CviJI RGCY 4 cut(s) 121, 183, 211, 250
CviKI_1 RGCY 4 cut(s) 121, 183, 211, 250
Eco147I AGGCCT 1 cut(s) 183
Eco31I GGTCTC 3 cut(s) 92, 226, 263
Eco47I GGWCC 1 cut(s) 277
EcoRII CCWGG 1 cut(s) 178
FaiI YATR 4 cut(s) 144, 168, 176, 339
Fnu4HI GCNGC 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 2 cut(s) 281, 343
GluI GCNGC 1 cut(s) 134
HaeIII GGCC 1 cut(s) 183
HapII CCGG 3 cut(s) 16, 275, 315
HgaI GACGC 1 cut(s) 81
Hin1I GRCGYC 1 cut(s) 92
HinfI GANTC 3 cut(s) 37, 62, 67
HpaII CCGG 3 cut(s) 16, 275, 315
Hpy188I TCNGA 3 cut(s) 36, 97, 268
Hpy188III TCNNGA 1 cut(s) 315
Hpy99I CGWCG 2 cut(s) 97, 258
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4V TGCA 2 cut(s) 136, 307
Hsp92I GRCGYC 1 cut(s) 92
Kpn2I TCCGGA 1 cut(s) 314
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 1 cut(s) 294
MaeI CTAG 2 cut(s) 281, 343
MaeIII GTNAC 2 cut(s) 85, 186
MboII GAAGA 3 cut(s) 62, 182, 313
MluCI AATT 2 cut(s) 22, 318
MlyI GAGTC 2 cut(s) 46, 71
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 5 cut(s) 73, 111, 261, 283, 286
MroI TCCGGA 1 cut(s) 314
MseI TTAA 1 cut(s) 240
MspI CCGG 3 cut(s) 16, 275, 315
MspR9I CCNGG 2 cut(s) 180, 275
MvaI CCWGG 1 cut(s) 180
MvnI CGCG 1 cut(s) 55
NciI CCSGG 1 cut(s) 275
NmuCI GTSAC 2 cut(s) 85, 186
PceI AGGCCT 1 cut(s) 183
PfeI GAWTC 1 cut(s) 67
PflFI GACNNNGTC 1 cut(s) 91
PkrI GCNGC 1 cut(s) 135
PleI GAGTC 2 cut(s) 45, 70
PpsI GAGTC 2 cut(s) 45, 70
PshAI GACNNNNGTC 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspPI GGNCC 1 cut(s) 277
PsyI GACNNNGTC 1 cut(s) 91
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 1 cut(s) 134
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 2 cut(s) 46, 71
ScrFI CCNGG 2 cut(s) 180, 275
SetI ASST 3 cut(s) 213, 238, 297
SfaNI GCATC 1 cut(s) 294
SinI GGWCC 1 cut(s) 277
Sse9I AATT 2 cut(s) 22, 318
SseBI AGGCCT 1 cut(s) 183
SsiI CCGC 2 cut(s) 55, 158
SspMI CTAG 2 cut(s) 281, 343
StuI AGGCCT 1 cut(s) 183
StyD4I CCNGG 2 cut(s) 178, 273
TaaI ACNGT 1 cut(s) 103
TaqI TCGA 5 cut(s) 60, 65, 116, 192, 253
TasI AATT 2 cut(s) 22, 318
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 1 cut(s) 82
TseFI GTSAC 2 cut(s) 85, 186
TseI GCWGC 1 cut(s) 133
Tsp45I GTSAC 2 cut(s) 85, 186
TspDTI ATGAA 3 cut(s) 183, 187, 275
TspRI CASTG 1 cut(s) 82
Tth111I GACNNNGTC 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 277
XspI CTAG 2 cut(s) 281, 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.