Rroxscaffold_5G00378050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000176
Physical Location & Seq
Forward (+)
58579175 .. 58583458
4284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00378050.1

Sequence Viewer

Length: 681 bp
ATGGAGGCATTGGTCGCTAAGCCATTAATGGCTCCTCGCAGCCTCCACGTACAAGCAAGGATAGCAATGGGGGCATCGAAGCCCGCCGTTTTTTGCAGATCGCCGAAGAGAGGACGCCCGCTAGCTCGAAAGGAAAGTTCGCCGACTCGGCGCCACATGTCGTGCGCCGGTTATTTCGCGAAGAAGAACCAGAGGCGAAACCTTCGGTGTTTGAGAGATTGGGGAGCAGGAATAAACCTACCGATACCTTACGGTGGAGACCAAAGAAGGCCAAAAGTGGCCCGAAAGGTCATAAGGATCGCAGATCTTCTCGAGAGTTTCTTGATCTTGTGGCGACGAAGGGGCTGCACTTTGATCACTCGTACTCTTGTTCTCTCGCGCCCACATCCCTCCTTTGATCCGAGTCGCGGCCGCTTCCACTTGTACCGAAGGACCGAAGGAAGAGAAAAGGAAATAATCCATCATGACCTTTCGGTCAATCATCTTCCGGGATGGTCTTCGGGAGAGCTCGACTCACAACCACATCTACCTCCAGGGGAAAAACAAGTCCGACGGTCGGACCCCGGAGGTAGGCCGCGAAGAAGAACACTAGGCCGCAAGCGGCCGACCGCCCTCTCCATCTTGCTCCACGCGATAAATATGAGGAGAGGGAATCCTCGAACCTCGGTTCTTCCGCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

25.83

Weight (kDa)

11.82

Isoelectric Point (pI)

74.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 473
AccB1I GGYRCC 1 cut(s) 150
AccII CGCG 6 cut(s) 179, 379, 408, 577, 632, 676
AciI CCGC 9 cut(s) 84, 119, 408, 412, 575, 595, 601, 609, 674
AclWI GGATC 2 cut(s) 305, 392
AcoI YGGCCR 2 cut(s) 409, 602
AcyI GRCGYC 2 cut(s) 115, 151
AfaI GTAC 3 cut(s) 51, 364, 425
AfiI CCNNNNNNNGG 5 cut(s) 110, 254, 407, 556, 570
AflIII ACRYGT 1 cut(s) 156
AjnI CCWGG 1 cut(s) 532
AluBI AGCT 2 cut(s) 125, 508
AluI AGCT 2 cut(s) 125, 508
Alw21I GWGCWC 1 cut(s) 510
Alw26I GTCTC 1 cut(s) 252
AlwI GGATC 2 cut(s) 305, 392
Ama87I CYCGRG 1 cut(s) 311
AoxI GGCC 6 cut(s) 269, 279, 409, 572, 592, 602
ApeKI GCWGC 2 cut(s) 39, 345
AseI ATTAAT 1 cut(s) 26
AspLEI GCGC 3 cut(s) 153, 167, 381
AspS9I GGNCC 3 cut(s) 280, 432, 559
AsuC2I CCSGG 2 cut(s) 489, 564
AsuNHI GCTAGC 1 cut(s) 121
AvaI CYCGRG 1 cut(s) 311
AvaII GGWCC 2 cut(s) 432, 559
BanI GGYRCC 1 cut(s) 150
BanII GRGCYC 1 cut(s) 510
BbsI GAAGAC 1 cut(s) 489
Bbv12I GWGCWC 1 cut(s) 510
BbvI GCAGC 2 cut(s) 51, 332
BccI CCATC 3 cut(s) 468, 486, 626
BceAI ACGGC 1 cut(s) 71
BcgI CGANNNNNNTGC 2 cut(s) 327, 361
BciT130I CCWGG 1 cut(s) 534
BclI TGATCA 1 cut(s) 354
BcnI CCSGG 2 cut(s) 489, 564
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 2 cut(s) 122, 590
BfoI RGCGCY 1 cut(s) 154
BglI GCCNNNNNGGC 1 cut(s) 148
BglII AGATCT 1 cut(s) 304
BisI GCNGC 7 cut(s) 40, 346, 409, 412, 575, 595, 602
BlpI GCTNAGC 1 cut(s) 18
BlsI GCNGC 7 cut(s) 41, 347, 410, 413, 576, 596, 603
Bme1390I CCNGG 3 cut(s) 489, 534, 564
Bme18I GGWCC 2 cut(s) 432, 559
BmeT110I CYCGRG 1 cut(s) 311
BmgT120I GGNCC 3 cut(s) 280, 432, 559
BmiI GGNNCC 3 cut(s) 33, 152, 561
BmrFI CCNGG 3 cut(s) 489, 534, 564
BmsI GCATC 1 cut(s) 83
BmtI GCTAGC 1 cut(s) 125
BpiI GAAGAC 1 cut(s) 489
BplI GAGNNNNNCTC 2 cut(s) 497, 529
BpmI CTGGAG 1 cut(s) 516
Bpu1102I GCTNAGC 1 cut(s) 18
BpuMI CCSGG 2 cut(s) 489, 564
BsaAI YACGTR 1 cut(s) 49
BsaHI GRCGYC 2 cut(s) 115, 151
BsaI GGTCTC 1 cut(s) 252
BsaJI CCNNGG 3 cut(s) 533, 562, 663
Bsc4I CCNNNNNNNGG 5 cut(s) 110, 254, 407, 556, 570
Bse118I RCCGGY 1 cut(s) 167
Bse3DI GCAATG 1 cut(s) 72
BseBI CCWGG 1 cut(s) 534
BseDI CCNNGG 3 cut(s) 533, 562, 663
BseGI GGATG 2 cut(s) 385, 497
BseLI CCNNNNNNNGG 5 cut(s) 110, 254, 407, 556, 570
BseMI GCAATG 1 cut(s) 72
BseRI GAGGAG 2 cut(s) 24, 658
BseX3I CGGCCG 2 cut(s) 409, 602
BseXI GCAGC 2 cut(s) 51, 332
BsgI GTGCAG 1 cut(s) 331
Bsh1236I CGCG 6 cut(s) 179, 379, 408, 577, 632, 676
Bsh1285I CGRYCG 4 cut(s) 412, 557, 605, 609
BshFI GGCC 6 cut(s) 271, 281, 411, 574, 594, 604
BshNI GGYRCC 1 cut(s) 150
BsiEI CGRYCG 4 cut(s) 412, 557, 605, 609
BsiHKAI GWGCWC 1 cut(s) 510
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 3 cut(s) 168, 488, 564
BslI CCNNNNNNNGG 5 cut(s) 110, 254, 407, 556, 570
BsmAI GTCTC 1 cut(s) 252
BsnI GGCC 6 cut(s) 271, 281, 411, 574, 594, 604
Bso31I GGTCTC 1 cut(s) 252
BsoBI CYCGRG 1 cut(s) 311
Bsp1286I GDGCHC 1 cut(s) 510
Bsp143I GATC 6 cut(s) 98, 297, 304, 324, 354, 397
Bsp1720I GCTNAGC 1 cut(s) 18
Bsp68I TCGCGA 1 cut(s) 179
BspACI CCGC 9 cut(s) 84, 119, 408, 412, 575, 595, 601, 609, 674
BspANI GGCC 6 cut(s) 271, 281, 411, 574, 594, 604
BspFNI CGCG 6 cut(s) 179, 379, 408, 577, 632, 676
BspHI TCATGA 1 cut(s) 463
BspLI GGNNCC 3 cut(s) 33, 152, 561
BspOI GCTAGC 1 cut(s) 125
BspPI GGATC 2 cut(s) 305, 392
BspT107I GGYRCC 1 cut(s) 150
BspTNI GGTCTC 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 72
BsrFI RCCGGY 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 3 cut(s) 533, 562, 663
BssMI GATC 6 cut(s) 98, 297, 304, 324, 354, 397
BssNI GRCGYC 2 cut(s) 115, 151
Bst2UI CCWGG 1 cut(s) 534
Bst4CI ACNGT 2 cut(s) 254, 555
Bst6I CTCTTC 2 cut(s) 101, 436
BstACI GRCGYC 2 cut(s) 115, 151
BstBAI YACGTR 1 cut(s) 49
BstC8I GCNNGC 4 cut(s) 84, 119, 123, 599
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 2 cut(s) 385, 497
BstFNI CGCG 6 cut(s) 179, 379, 408, 577, 632, 676
BstH2I RGCGCY 1 cut(s) 154
BstHHI GCGC 3 cut(s) 153, 167, 381
BstKTI GATC 6 cut(s) 101, 300, 307, 327, 357, 400
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 6 cut(s) 98, 297, 304, 324, 354, 397
BstMCI CGRYCG 4 cut(s) 412, 557, 605, 609
BstMWI GCNNNNNNNGC 4 cut(s) 14, 62, 71, 148
BstNI CCWGG 1 cut(s) 534
BstNSI RCATGY 1 cut(s) 160
BstSCI CCNGG 3 cut(s) 487, 532, 562
BstUI CGCG 6 cut(s) 179, 379, 408, 577, 632, 676
BstV1I GCAGC 2 cut(s) 51, 332
BstV2I GAAGAC 1 cut(s) 489
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BstZI CGGCCG 2 cut(s) 409, 602
BsuRI GGCC 6 cut(s) 271, 281, 411, 574, 594, 604
BtsCI GGATG 2 cut(s) 385, 497
BtuMI TCGCGA 1 cut(s) 179
Cac8I GCNNGC 4 cut(s) 84, 119, 123, 599
CciI TCATGA 1 cut(s) 463
CciNI GCGGCCGC 1 cut(s) 409
CfoI GCGC 3 cut(s) 153, 167, 381
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 3 cut(s) 280, 432, 559
CseI GACGC 1 cut(s) 123
Csp6I GTAC 3 cut(s) 50, 363, 424
CviAII CATG 2 cut(s) 157, 464
CviQI GTAC 3 cut(s) 50, 363, 424
DdeI CTNAG 1 cut(s) 18
DinI GGCGCC 1 cut(s) 152
DpnI GATC 6 cut(s) 100, 299, 306, 326, 356, 399
DpnII GATC 6 cut(s) 98, 297, 304, 324, 354, 397
DrdI GACNNNNNNGTC 1 cut(s) 473
DseDI GACNNNNNNGTC 1 cut(s) 473
EaeI YGGCCR 2 cut(s) 409, 602
EagI CGGCCG 2 cut(s) 409, 602
Eam1104I CTCTTC 2 cut(s) 101, 436
EarI CTCTTC 2 cut(s) 101, 436
Ecl136II GAGCTC 1 cut(s) 508
EclXI CGGCCG 2 cut(s) 409, 602
Eco24I GRGCYC 1 cut(s) 510
Eco31I GGTCTC 1 cut(s) 252
Eco47I GGWCC 2 cut(s) 432, 559
Eco52I CGGCCG 2 cut(s) 409, 602
Eco53kI GAGCTC 1 cut(s) 508
Eco88I CYCGRG 1 cut(s) 311
EcoICRI GAGCTC 1 cut(s) 508
EcoRII CCWGG 1 cut(s) 532
EcoT38I GRGCYC 1 cut(s) 510
EgeI GGCGCC 1 cut(s) 152
EheI GGCGCC 1 cut(s) 152
FaeI CATG 2 cut(s) 160, 467
FaiI YATR 4 cut(s) 158, 293, 465, 641
FatI CATG 2 cut(s) 156, 463
FauI CCCGC 2 cut(s) 91, 126
FbaI TGATCA 1 cut(s) 354
Fnu4HI GCNGC 7 cut(s) 40, 346, 409, 412, 575, 595, 602
FokI GGATG 2 cut(s) 372, 504
FriOI GRGCYC 1 cut(s) 510
Fsp4HI GCNGC 7 cut(s) 40, 346, 409, 412, 575, 595, 602
FspBI CTAG 2 cut(s) 122, 590
GlaI GCGC 3 cut(s) 152, 166, 380
GluI GCNGC 7 cut(s) 40, 346, 409, 412, 575, 595, 602
GsuI CTGGAG 1 cut(s) 516
HaeII RGCGCY 1 cut(s) 154
HaeIII GGCC 6 cut(s) 271, 281, 411, 574, 594, 604
HapII CCGG 3 cut(s) 168, 488, 564
HgaI GACGC 1 cut(s) 123
HhaI GCGC 3 cut(s) 153, 167, 381
Hin1I GRCGYC 2 cut(s) 115, 151
Hin1II CATG 2 cut(s) 160, 467
Hin6I GCGC 3 cut(s) 151, 165, 379
HinP1I GCGC 3 cut(s) 151, 165, 379
HinfI GANTC 4 cut(s) 145, 403, 512, 652
HpaII CCGG 3 cut(s) 168, 488, 564
Hpy188I TCNGA 3 cut(s) 402, 551, 559
Hpy188III TCNNGA 6 cut(s) 178, 311, 313, 322, 464, 501
Hpy99I CGWCG 2 cut(s) 339, 555
HpyAV CCTTC 5 cut(s) 212, 261, 333, 423, 431
HpyCH4III ACNGT 2 cut(s) 254, 555
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 2 cut(s) 96, 348
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 62, 71, 148
HpyF3I CTNAG 1 cut(s) 18
HpySE526I ACGT 1 cut(s) 48
Hsp92I GRCGYC 2 cut(s) 115, 151
Hsp92II CATG 2 cut(s) 160, 467
HspAI GCGC 3 cut(s) 151, 165, 379
KasI GGCGCC 1 cut(s) 150
Ksp22I TGATCA 1 cut(s) 354
Kzo9I GATC 6 cut(s) 98, 297, 304, 324, 354, 397
LmnI GCTCC 3 cut(s) 37, 224, 630
LpnPI CCDG 7 cut(s) 181, 203, 213, 501, 519, 546, 577
Lsp1109I GCAGC 2 cut(s) 51, 332
LweI GCATC 1 cut(s) 83
MaeI CTAG 2 cut(s) 122, 590
MaeII ACGT 1 cut(s) 48
MalI GATC 6 cut(s) 100, 299, 306, 326, 356, 399
MboI GATC 6 cut(s) 98, 297, 304, 324, 354, 397
MflI RGATCY 1 cut(s) 304
MhlI GDGCHC 1 cut(s) 510
Mly113I GGCGCC 1 cut(s) 151
MlyI GAGTC 3 cut(s) 139, 412, 506
MmeI TCCRAC 2 cut(s) 537, 574
MseI TTAA 1 cut(s) 26
MspI CCGG 3 cut(s) 168, 488, 564
MspR9I CCNGG 3 cut(s) 489, 534, 564
MvaI CCWGG 1 cut(s) 534
MvnI CGCG 6 cut(s) 179, 379, 408, 577, 632, 676
MwoI GCNNNNNNNGC 4 cut(s) 14, 62, 71, 148
NarI GGCGCC 1 cut(s) 151
NciI CCSGG 2 cut(s) 489, 564
NdeII GATC 6 cut(s) 98, 297, 304, 324, 354, 397
NheI GCTAGC 1 cut(s) 121
NlaIII CATG 2 cut(s) 160, 467
NlaIV GGNNCC 3 cut(s) 33, 152, 561
NmeAIII GCCGAG 1 cut(s) 127
NotI GCGGCCGC 1 cut(s) 409
NruI TCGCGA 1 cut(s) 179
NspI RCATGY 1 cut(s) 160
PaeR7I CTCGAG 1 cut(s) 311
PagI TCATGA 1 cut(s) 463
PciI ACATGT 1 cut(s) 156
PfeI GAWTC 1 cut(s) 652
PfoI TCCNGGA 1 cut(s) 487
PkrI GCNGC 7 cut(s) 41, 347, 410, 413, 576, 596, 603
PleI GAGTC 3 cut(s) 139, 411, 506
PluTI GGCGCC 1 cut(s) 154
PpsI GAGTC 3 cut(s) 139, 411, 506
Ppu21I YACGTR 1 cut(s) 49
PscI ACATGT 1 cut(s) 156
PshBI ATTAAT 1 cut(s) 26
Psp124BI GAGCTC 1 cut(s) 510
Psp6I CCWGG 1 cut(s) 532
PspGI CCWGG 1 cut(s) 532
PspN4I GGNNCC 3 cut(s) 33, 152, 561
PspPI GGNCC 3 cut(s) 280, 432, 559
PsuI RGATCY 1 cut(s) 304
RruI TCGCGA 1 cut(s) 179
RsaI GTAC 3 cut(s) 51, 364, 425
RsaNI GTAC 3 cut(s) 50, 363, 424
SacI GAGCTC 1 cut(s) 510
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 7 cut(s) 40, 346, 409, 412, 575, 595, 602
Sau3AI GATC 6 cut(s) 98, 297, 304, 324, 354, 397
Sau96I GGNCC 3 cut(s) 280, 432, 559
SchI GAGTC 3 cut(s) 139, 412, 506
ScrFI CCNGG 3 cut(s) 489, 534, 564
SduI GDGCHC 1 cut(s) 510
SfaNI GCATC 1 cut(s) 83
SfoI GGCGCC 1 cut(s) 152
Sfr274I CTCGAG 1 cut(s) 311
SinI GGWCC 2 cut(s) 432, 559
SlaI CTCGAG 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
SsiI CCGC 9 cut(s) 84, 119, 408, 412, 575, 595, 601, 609, 674
SspDI GGCGCC 1 cut(s) 150
SspMI CTAG 2 cut(s) 122, 590
SstI GAGCTC 1 cut(s) 510
StyD4I CCNGG 3 cut(s) 487, 532, 562
TaaI ACNGT 2 cut(s) 254, 555
TaiI ACGT 1 cut(s) 51
TaqI TCGA 5 cut(s) 77, 127, 312, 510, 658
TaqII GACCGA 2 cut(s) 449, 463
TauI GCSGC 5 cut(s) 411, 414, 577, 597, 604
TfiI GAWTC 1 cut(s) 652
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TseI GCWGC 2 cut(s) 39, 345
VpaK11BI GGWCC 2 cut(s) 432, 559
VspI ATTAAT 1 cut(s) 26
XceI RCATGY 1 cut(s) 160
XhoI CTCGAG 1 cut(s) 311
XspI CTAG 2 cut(s) 122, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.