Rmu_sc0000347.1_g000012

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000347.1
Physical Location & Seq
Reverse (-)
33045 .. 33410
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000347.1_g000012.1.cds

Sequence Viewer

Length: 366 bp
atggtggaaaaagaggcttatgatcacatcgcgaccttagaggtcgttaaagaagaactttctgatccggaggacgaagatgaagtcagtattcaacttgccccggcagctctggacgatacccctcctaaggtcagagatcctactgacaaggtcaatttgggaaccgtgagcgaacctatggaggtatctatcagcgcttacttagagcctggcgagaaacagaggctcactgaattgttattagagtttaaggattgctttgcggaaaaatatgaagacatgcccggcctgtcaccggatttggtttgtcatcaactaccaactcttcctgacaagaggctcgtcaagcaagagcctcgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

121

Amino Acids

13.65

Weight (kDa)

4.32

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 32
AccIII TCCGGA 1 cut(s) 67
AciI CCGC 1 cut(s) 266
AclWI GGATC 2 cut(s) 59, 134
AfeI AGCGCT 1 cut(s) 199
AfiI CCNNNNNNNGG 2 cut(s) 130, 298
AgsI TTSAA 1 cut(s) 95
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
AlwI GGATC 2 cut(s) 59, 134
Aor13HI TCCGGA 1 cut(s) 67
Aor51HI AGCGCT 1 cut(s) 199
AoxI GGCC 1 cut(s) 289
ApeKI GCWGC 1 cut(s) 107
ArsI GACNNNNNNTTYG 2 cut(s) 69, 101
AspLEI GCGC 1 cut(s) 200
AsuC2I CCSGG 2 cut(s) 104, 288
AsuHPI GGTGA 1 cut(s) 288
AxyI CCTNAGG 1 cut(s) 129
BbsI GAAGAC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 119
BcgI CGANNNNNNTGC 1 cut(s) 341
BciT130I CCWGG 1 cut(s) 213
BclI TGATCA 1 cut(s) 22
BcnI CCSGG 2 cut(s) 104, 288
BfoI RGCGCY 1 cut(s) 201
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 3 cut(s) 104, 213, 288
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 3 cut(s) 104, 213, 288
BpiI GAAGAC 1 cut(s) 285
BpuMI CCSGG 2 cut(s) 104, 288
BsaJI CCNNGG 1 cut(s) 102
BsaWI WCCGGW 2 cut(s) 67, 298
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 298
Bse21I CCTNAGG 1 cut(s) 129
BseAI TCCGGA 1 cut(s) 67
BseBI CCWGG 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 102
BseLI CCNNNNNNNGG 2 cut(s) 130, 298
BseXI GCAGC 1 cut(s) 119
Bsh1236I CGCG 1 cut(s) 32
BshFI GGCC 1 cut(s) 291
BsiSI CCGG 4 cut(s) 68, 104, 288, 299
BslI CCNNNNNNNGG 2 cut(s) 130, 298
BsnI GGCC 1 cut(s) 291
Bsp13I TCCGGA 1 cut(s) 67
Bsp143I GATC 3 cut(s) 22, 64, 139
Bsp68I TCGCGA 1 cut(s) 32
BspACI CCGC 1 cut(s) 266
BspANI GGCC 1 cut(s) 291
BspEI TCCGGA 1 cut(s) 67
BspFNI CGCG 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 166
BspPI GGATC 2 cut(s) 59, 134
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 3 cut(s) 22, 64, 139
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 333
BstDEI CTNAG 3 cut(s) 37, 129, 205
BstFNI CGCG 1 cut(s) 32
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 3 cut(s) 25, 67, 142
BstMBI GATC 3 cut(s) 22, 64, 139
BstMWI GCNNNNNNNGC 2 cut(s) 107, 349
BstNI CCWGG 1 cut(s) 213
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 3 cut(s) 102, 211, 286
BstUI CGCG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 119
BstV2I GAAGAC 1 cut(s) 285
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
Bsu36I CCTNAGG 1 cut(s) 129
BsuRI GGCC 1 cut(s) 291
BtgZI GCGATG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 231
BtuMI TCGCGA 1 cut(s) 32
CfoI GCGC 1 cut(s) 200
CviAII CATG 1 cut(s) 283
CviJI RGCY 7 cut(s) 17, 110, 211, 229, 291, 343, 358
CviKI_1 RGCY 7 cut(s) 17, 110, 211, 229, 291, 343, 358
DdeI CTNAG 3 cut(s) 37, 129, 205
DpnI GATC 3 cut(s) 24, 66, 141
DpnII GATC 3 cut(s) 22, 64, 139
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco47III AGCGCT 1 cut(s) 199
Eco81I CCTNAGG 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 211
FaeI CATG 1 cut(s) 286
FaiI YATR 4 cut(s) 21, 182, 276, 284
FalI AAGNNNNNCTT 4 cut(s) 42, 74, 245, 277
FatI CATG 1 cut(s) 282
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 108
GlaI GCGC 1 cut(s) 199
GluI GCNGC 1 cut(s) 108
HaeII RGCGCY 1 cut(s) 201
HaeIII GGCC 1 cut(s) 291
HapII CCGG 4 cut(s) 68, 104, 288, 299
HhaI GCGC 1 cut(s) 200
Hin1II CATG 1 cut(s) 286
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HpaII CCGG 4 cut(s) 68, 104, 288, 299
HphI GGTGA 1 cut(s) 288
Hpy188I TCNGA 2 cut(s) 64, 137
Hpy188III TCNNGA 4 cut(s) 31, 68, 113, 332
HpyCH4III ACNGT 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 349
HpyF3I CTNAG 3 cut(s) 37, 129, 205
Hsp92II CATG 1 cut(s) 286
HspAI GCGC 1 cut(s) 198
Kpn2I TCCGGA 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 3 cut(s) 22, 64, 139
LpnPI CCDG 9 cut(s) 81, 98, 117, 198, 225, 301, 305, 312, 345
Lsp1109I GCAGC 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 294
MalI GATC 3 cut(s) 24, 66, 141
MboI GATC 3 cut(s) 22, 64, 139
MboII GAAGA 4 cut(s) 65, 89, 290, 320
MflI RGATCY 1 cut(s) 139
MluCI AATT 2 cut(s) 157, 236
MnlI CCTC 7 cut(s) 7, 34, 64, 135, 178, 219, 333
MroI TCCGGA 1 cut(s) 67
MseI TTAA 2 cut(s) 48, 252
MspI CCGG 4 cut(s) 68, 104, 288, 299
MspR9I CCNGG 3 cut(s) 104, 213, 288
MvaI CCWGG 1 cut(s) 213
MvnI CGCG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 107, 349
NciI CCSGG 2 cut(s) 104, 288
NdeII GATC 3 cut(s) 22, 64, 139
NlaIII CATG 1 cut(s) 286
NlaIV GGNNCC 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 294
NruI TCGCGA 1 cut(s) 32
NspI RCATGY 1 cut(s) 286
PflFI GACNNNGTC 1 cut(s) 152
PkrI GCNGC 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 166
PsuI RGATCY 1 cut(s) 139
PsyI GACNNNGTC 1 cut(s) 152
RruI TCGCGA 1 cut(s) 32
SaqAI TTAA 2 cut(s) 48, 252
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 3 cut(s) 22, 64, 139
ScrFI CCNGG 3 cut(s) 104, 213, 288
SetI ASST 7 cut(s) 38, 45, 112, 135, 156, 181, 189
Sse9I AATT 2 cut(s) 157, 236
SsiI CCGC 1 cut(s) 266
StyD4I CCNGG 3 cut(s) 102, 211, 286
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 361
TasI AATT 2 cut(s) 157, 236
Tru1I TTAA 2 cut(s) 48, 252
Tru9I TTAA 2 cut(s) 48, 252
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 1 cut(s) 294
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 294
TspDTI ATGAA 2 cut(s) 96, 291
TspRI CASTG 1 cut(s) 238
Tth111I GACNNNGTC 1 cut(s) 152
XceI RCATGY 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.