Rmu_sc0023942.1_g000001

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023942.1
Physical Location & Seq
Forward (+)
1 .. 306
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023942.1_g000001.1.cds

Sequence Viewer

Length: 306 bp
ccggaggatgaagatgaagtcaatattcaactcgccccggcggcgctggacgacacacctccccaagttaaagaccctactgagaaggttaatctgggcacagtagacgagcctatggaggtatctatcagcgcttatctagagactagcgagaaacagcggctcactgacttattattagagtttaaagactgcttcgcagagaaatatgaagacatgcccggcctgtcaccagatttggtttgtcatcaactaccaactcttcctgacaagaggcccgtcaagcggagacccagattcttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

101

Amino Acids

11.48

Weight (kDa)

4.43

Isoelectric Point (pI)

58.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 105
AciI CCGC 3 cut(s) 41, 160, 286
AfeI AGCGCT 1 cut(s) 133
AfiI CCNNNNNNNGG 1 cut(s) 285
AgsI TTSAA 1 cut(s) 29
Alw26I GTCTC 2 cut(s) 137, 283
Aor51HI AGCGCT 1 cut(s) 133
AoxI GGCC 2 cut(s) 223, 275
AspLEI GCGC 2 cut(s) 46, 134
AspS9I GGNCC 1 cut(s) 276
AsuC2I CCSGG 2 cut(s) 38, 222
AsuHPI GGTGA 1 cut(s) 222
BaeGI GKGCMC 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 219
BcnI CCSGG 2 cut(s) 38, 222
BcoDI GTCTC 2 cut(s) 137, 283
BfaI CTAG 2 cut(s) 140, 147
BfoI RGCGCY 2 cut(s) 47, 135
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 2 cut(s) 42, 161
BlsI GCNGC 2 cut(s) 43, 162
Bme1390I CCNGG 2 cut(s) 38, 222
BmgT120I GGNCC 1 cut(s) 276
BmrFI CCNGG 2 cut(s) 38, 222
BpiI GAAGAC 1 cut(s) 219
BpuMI CCSGG 2 cut(s) 38, 222
BsaI GGTCTC 1 cut(s) 283
BsaJI CCNNGG 1 cut(s) 36
Bsc4I CCNNNNNNNGG 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 72
BseSI GKGCMC 1 cut(s) 101
BshFI GGCC 2 cut(s) 225, 277
BsiSI CCGG 3 cut(s) 2, 38, 222
BslI CCNNNNNNNGG 1 cut(s) 285
BsmAI GTCTC 2 cut(s) 137, 283
BsnI GGCC 2 cut(s) 225, 277
Bso31I GGTCTC 1 cut(s) 283
Bsp1286I GDGCHC 1 cut(s) 101
BspACI CCGC 3 cut(s) 41, 160, 286
BspANI GGCC 2 cut(s) 225, 277
BspCNI CTCAG 1 cut(s) 73
BspTNI GGTCTC 1 cut(s) 283
BssECI CCNNGG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 103
Bst6I CTCTTC 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 81
BstF5I GGATG 1 cut(s) 13
BstH2I RGCGCY 2 cut(s) 47, 135
BstHHI GCGC 2 cut(s) 46, 134
BstMAI GTCTC 2 cut(s) 137, 283
BstMWI GCNNNNNNNGC 2 cut(s) 41, 283
BstNSI RCATGY 1 cut(s) 220
BstSCI CCNGG 2 cut(s) 36, 220
BstSLI GKGCMC 1 cut(s) 101
BstV2I GAAGAC 1 cut(s) 219
BsuRI GGCC 2 cut(s) 225, 277
BtsCI GGATG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 165
CfoI GCGC 2 cut(s) 46, 134
Cfr13I GGNCC 1 cut(s) 276
CviAII CATG 1 cut(s) 217
CviJI RGCY 4 cut(s) 112, 163, 225, 277
CviKI_1 RGCY 4 cut(s) 112, 163, 225, 277
DdeI CTNAG 1 cut(s) 81
DraI TTTAAA 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco31I GGTCTC 1 cut(s) 283
Eco47III AGCGCT 1 cut(s) 133
FaeI CATG 1 cut(s) 220
FaiI YATR 3 cut(s) 116, 210, 218
FatI CATG 1 cut(s) 216
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 2 cut(s) 42, 161
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 2 cut(s) 42, 161
FspBI CTAG 2 cut(s) 140, 147
GlaI GCGC 2 cut(s) 45, 133
GluI GCNGC 2 cut(s) 42, 161
HaeII RGCGCY 2 cut(s) 47, 135
HaeIII GGCC 2 cut(s) 225, 277
HapII CCGG 3 cut(s) 2, 38, 222
HhaI GCGC 2 cut(s) 46, 134
Hin1II CATG 1 cut(s) 220
Hin6I GCGC 2 cut(s) 44, 132
HinP1I GCGC 2 cut(s) 44, 132
HinfI GANTC 1 cut(s) 297
HpaII CCGG 3 cut(s) 2, 38, 222
HphI GGTGA 1 cut(s) 222
Hpy166II GTNNAC 1 cut(s) 106
Hpy188III TCNNGA 2 cut(s) 140, 266
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 103
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 283
HpyF3I CTNAG 1 cut(s) 81
Hsp92II CATG 1 cut(s) 220
HspAI GCGC 2 cut(s) 44, 132
LpnPI CCDG 8 cut(s) 15, 32, 51, 80, 235, 239, 246, 279
MaeI CTAG 2 cut(s) 140, 147
MaeIII GTNAC 1 cut(s) 228
MboII GAAGA 3 cut(s) 23, 224, 254
MhlI GDGCHC 1 cut(s) 101
MnlI CCTC 3 cut(s) 69, 112, 267
MseI TTAA 3 cut(s) 69, 90, 186
MspA1I CMGCKG 1 cut(s) 160
MspI CCGG 3 cut(s) 2, 38, 222
MspR9I CCNGG 2 cut(s) 38, 222
MwoI GCNNNNNNNGC 2 cut(s) 41, 283
NciI CCSGG 2 cut(s) 38, 222
NlaIII CATG 1 cut(s) 220
NmuCI GTSAC 1 cut(s) 228
NspI RCATGY 1 cut(s) 220
PfeI GAWTC 1 cut(s) 297
PkrI GCNGC 2 cut(s) 43, 162
PspPI GGNCC 1 cut(s) 276
SaqAI TTAA 3 cut(s) 69, 90, 186
SatI GCNGC 2 cut(s) 42, 161
Sau96I GGNCC 1 cut(s) 276
ScrFI CCNGG 2 cut(s) 38, 222
SduI GDGCHC 1 cut(s) 101
SetI ASST 3 cut(s) 61, 90, 123
SsiI CCGC 3 cut(s) 41, 160, 286
SspI AATATT 1 cut(s) 25
SspMI CTAG 2 cut(s) 140, 147
StyD4I CCNGG 2 cut(s) 36, 220
TaaI ACNGT 1 cut(s) 103
TauI GCSGC 2 cut(s) 44, 163
TfiI GAWTC 1 cut(s) 297
Tru1I TTAA 3 cut(s) 69, 90, 186
Tru9I TTAA 3 cut(s) 69, 90, 186
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 1 cut(s) 228
Tsp45I GTSAC 1 cut(s) 228
TspDTI ATGAA 3 cut(s) 24, 30, 225
TspRI CASTG 1 cut(s) 172
XbaI TCTAGA 1 cut(s) 139
XceI RCATGY 1 cut(s) 220
XmiI GTMKAC 1 cut(s) 105
XspI CTAG 2 cut(s) 140, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.