Rmu_sc0021680.1_g000002

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021680.1
OG0000176
Physical Location & Seq
Forward (+)
715 .. 1187
473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021680.1_g000002.1.cds

Sequence Viewer

Length: 402 bp
atggattacgacctcccagaggaagggataagggccttccactcgctgtacgaaagactatcatcgtacttagtggaaaaagaggcctacgatcgattcacgaccttagaggccgtcaatgaagaactctctgatcaggaacaagaagatgaggaacaagaagatgaggtagatatccagcttactccggcagcgctggacgatacaccccctaaggtaagagaccctaccgagaaggtcaatcttggaacagcagatgagcctatggaagtggctatcagcgcttacttagagcctagtgagaaacaaaggctcattgacttattactagagttcaaagactgtttcgcagagaagtatgaagacatgcccggcctgtcaccggacttggtttgccattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

133

Amino Acids

15.3

Weight (kDa)

4.05

Isoelectric Point (pI)

48.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 50, 68
AfeI AGCGCT 2 cut(s) 195, 283
AfiI CCNNNNNNNGG 3 cut(s) 19, 23, 382
AgsI TTSAA 1 cut(s) 337
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
Alw26I GTCTC 1 cut(s) 216
Aor51HI AGCGCT 2 cut(s) 195, 283
AoxI GGCC 4 cut(s) 33, 84, 111, 373
ApeKI GCWGC 1 cut(s) 191
AspLEI GCGC 2 cut(s) 196, 284
AspS9I GGNCC 1 cut(s) 33
AsuC2I CCSGG 1 cut(s) 372
AsuHPI GGTGA 1 cut(s) 372
AxyI CCTNAGG 1 cut(s) 213
BbsI GAAGAC 1 cut(s) 369
BbvI GCAGC 1 cut(s) 203
BceAI ACGGC 1 cut(s) 98
BclI TGATCA 1 cut(s) 133
BcnI CCSGG 1 cut(s) 372
BcoDI GTCTC 1 cut(s) 216
BfaI CTAG 2 cut(s) 297, 329
BfoI RGCGCY 2 cut(s) 197, 285
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
Bme1390I CCNGG 1 cut(s) 372
BmgT120I GGNCC 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 372
BpiI GAAGAC 1 cut(s) 369
BpuMI CCSGG 1 cut(s) 372
Bsa29I ATCGAT 1 cut(s) 94
BsaI GGTCTC 1 cut(s) 216
BsaWI WCCGGW 1 cut(s) 382
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 23, 382
Bse21I CCTNAGG 1 cut(s) 213
BseCI ATCGAT 1 cut(s) 94
BseLI CCNNNNNNNGG 3 cut(s) 19, 23, 382
BseXI GCAGC 1 cut(s) 203
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 4 cut(s) 35, 86, 113, 375
BshVI ATCGAT 1 cut(s) 94
BsiEI CGRYCG 1 cut(s) 94
BsiSI CCGG 3 cut(s) 188, 372, 383
BslI CCNNNNNNNGG 3 cut(s) 19, 23, 382
BsmAI GTCTC 1 cut(s) 216
BsnI GGCC 4 cut(s) 35, 86, 113, 375
Bso31I GGTCTC 1 cut(s) 216
Bsp143I GATC 2 cut(s) 91, 133
BspANI GGCC 4 cut(s) 35, 86, 113, 375
BspDI ATCGAT 1 cut(s) 94
BspTNI GGTCTC 1 cut(s) 216
BssMI GATC 2 cut(s) 91, 133
Bst4CI ACNGT 1 cut(s) 344
BstDEI CTNAG 4 cut(s) 70, 106, 213, 289
BstENI CCTNNNNNAGG 1 cut(s) 17
BstH2I RGCGCY 2 cut(s) 197, 285
BstHHI GCGC 2 cut(s) 196, 284
BstKTI GATC 2 cut(s) 94, 136
BstMAI GTCTC 1 cut(s) 216
BstMBI GATC 2 cut(s) 91, 133
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstNSI RCATGY 1 cut(s) 370
BstSCI CCNGG 1 cut(s) 370
BstV1I GCAGC 1 cut(s) 203
BstV2I GAAGAC 1 cut(s) 369
Bsu15I ATCGAT 1 cut(s) 94
Bsu36I CCTNAGG 1 cut(s) 213
BsuRI GGCC 4 cut(s) 35, 86, 113, 375
BsuTUI ATCGAT 1 cut(s) 94
CfoI GCGC 2 cut(s) 196, 284
Cfr13I GGNCC 1 cut(s) 33
ClaI ATCGAT 1 cut(s) 94
Csp6I GTAC 2 cut(s) 49, 67
CviAII CATG 1 cut(s) 367
CviJI RGCY 9 cut(s) 35, 86, 113, 181, 262, 275, 295, 313, 375
CviKI_1 RGCY 9 cut(s) 35, 86, 113, 181, 262, 275, 295, 313, 375
CviQI GTAC 2 cut(s) 49, 67
DdeI CTNAG 4 cut(s) 70, 106, 213, 289
DpnI GATC 2 cut(s) 93, 135
DpnII GATC 2 cut(s) 91, 133
Eco147I AGGCCT 1 cut(s) 86
Eco31I GGTCTC 1 cut(s) 216
Eco32I GATATC 1 cut(s) 175
Eco47III AGCGCT 2 cut(s) 195, 283
Eco81I CCTNAGG 1 cut(s) 213
EcoNI CCTNNNNNAGG 1 cut(s) 17
EcoO109I RGGNCCY 1 cut(s) 33
EcoRV GATATC 1 cut(s) 175
FaeI CATG 1 cut(s) 370
FaiI YATR 3 cut(s) 266, 360, 368
FatI CATG 1 cut(s) 366
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 192
Fsp4HI GCNGC 1 cut(s) 192
FspBI CTAG 2 cut(s) 297, 329
GlaI GCGC 2 cut(s) 195, 283
GluI GCNGC 1 cut(s) 192
HaeII RGCGCY 2 cut(s) 197, 285
HaeIII GGCC 4 cut(s) 35, 86, 113, 375
HapII CCGG 3 cut(s) 188, 372, 383
HhaI GCGC 2 cut(s) 196, 284
Hin1II CATG 1 cut(s) 370
Hin6I GCGC 2 cut(s) 194, 282
HinP1I GCGC 2 cut(s) 194, 282
HinfI GANTC 1 cut(s) 96
HpaII CCGG 3 cut(s) 188, 372, 383
HphI GGTGA 1 cut(s) 372
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 2 cut(s) 100, 137
HpyAV CCTTC 3 cut(s) 17, 46, 229
HpyCH4III ACNGT 1 cut(s) 344
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 4 cut(s) 70, 106, 213, 289
Hsp92II CATG 1 cut(s) 370
HspAI GCGC 2 cut(s) 194, 282
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 2 cut(s) 91, 133
LpnPI CCDG 8 cut(s) 30, 122, 182, 191, 201, 385, 389, 396
Lsp1109I GCAGC 1 cut(s) 203
MaeI CTAG 2 cut(s) 297, 329
MaeIII GTNAC 1 cut(s) 378
MalI GATC 2 cut(s) 93, 135
MboI GATC 2 cut(s) 91, 133
MboII GAAGA 4 cut(s) 134, 158, 173, 374
MnlI CCTC 6 cut(s) 13, 23, 76, 103, 145, 160
MseI TTAA 1 cut(s) 400
MspI CCGG 3 cut(s) 188, 372, 383
MspR9I CCNGG 1 cut(s) 372
MwoI GCNNNNNNNGC 1 cut(s) 281
NciI CCSGG 1 cut(s) 372
NdeII GATC 2 cut(s) 91, 133
NlaIII CATG 1 cut(s) 370
NmuCI GTSAC 1 cut(s) 378
NspI RCATGY 1 cut(s) 370
PceI AGGCCT 1 cut(s) 86
PfeI GAWTC 1 cut(s) 96
PkrI GCNGC 1 cut(s) 193
Ple19I CGATCG 1 cut(s) 94
PspPI GGNCC 1 cut(s) 33
PvuI CGATCG 1 cut(s) 94
RsaI GTAC 2 cut(s) 50, 68
RsaNI GTAC 2 cut(s) 49, 67
SaqAI TTAA 1 cut(s) 400
SatI GCNGC 1 cut(s) 192
Sau3AI GATC 2 cut(s) 91, 133
Sau96I GGNCC 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 372
SetI ASST 6 cut(s) 15, 107, 171, 183, 219, 240
SseBI AGGCCT 1 cut(s) 86
SspMI CTAG 2 cut(s) 297, 329
StuI AGGCCT 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 370
TaaI ACNGT 1 cut(s) 344
TaqI TCGA 1 cut(s) 94
TfiI GAWTC 1 cut(s) 96
Tru1I TTAA 1 cut(s) 400
Tru9I TTAA 1 cut(s) 400
TseFI GTSAC 1 cut(s) 378
TseI GCWGC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 378
TspDTI ATGAA 2 cut(s) 135, 375
XagI CCTNNNNNAGG 1 cut(s) 17
XceI RCATGY 1 cut(s) 370
XspI CTAG 2 cut(s) 297, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.