Rroxscaffold_5G00339550

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000176
Physical Location & Seq
Reverse (-)
7989872 .. 7995580
5709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00339550.1

Sequence Viewer

Length: 1239 bp
ATGGTCAATGTAGATTGGAACAAAAAGCGAGAACGGAAACCAACGCCGGATTTGGCCACGAGCAAACAGGGTCATGAATCCATCGCATCGGGGGGCAAGGATAGAGTTGTTAACGCTTTGCGGTGGCAACCCAAGAAAGTACAAAGTGTGGTCATTGCCGCCCCAAAAGAGCGTGAGGAACCAAAAAACCCTAAGCCGTTGGTAGGTGAGCAAGCACTCGAGTCACAAGGATTGGAACACTACCAGGTAAAAGGCCTTACCGAAGAGTCGTTAGTGGATCGCGTGGCTCGGCGGTTCCGGTCGATATCCCGTTGGAAGAACCCAAGCTTGATTTGGACGTCGACGTGGAGGGACCGAGTCACCGACGTTTCTTGCAACATGGTTTATGTGCTCCCCGCGAAATATGCTCGCCGGTCGCTGCTCGAGATTGCGTGGAGACAGAAGAAGAGGTTACACAACCGTTGCAGGTCACTTCGGCAGCCGCAACACCCGCAGAAGACAGGGCCTCGCCGGAACCAATTAAGAACTTTCGATCCGGAGGATGAAGAGGAAGTACATATTCAGCTCGCTCCGGCGGAGTTGGACGATACACCGCCCAAGGTTAAAGACCCTACCGAGAAGGTCAACCCGGGTACCGTAAGCGAGCCTATGGAAGTATCTATCGTTGCTTACCTAGAGCCTAGCGAGAAACAGAGGCTCATCGAAGTATTGCTAGAGTTCAAGGATTGCTTTGCGGAGAAGTACGAGGACATGCCCGGCTCGTCACCAGGCCCGTCAAACAGAACCTCGACGAATGAACTCGCAGACCCGTATTCGGTAAAGGAAGAGGTAGAGAAAATGCATAAGTCGTGCATCATAAGGGTTGCCAAGTATAACCGGTGGCTATCTAATATAGTGCCTCGTCCGGAAGAAAAATGGCAAGATGAGAGTCGCGTTGATTATAAAGACTTGAATCTCGCTACACCTAAAGATGTTTATCCCATGCCGGTCGCGGATATGTTGGTGGACGCGGTGGCAGGCCATGAATTGCTGTCCTTCATGGACGGCACCGCGGATATCACCGCATTCCGTCGCCGAAGAAGACAGACACAAGACCGCTTTCCGCCGCCTCGGCTTCGCGGGAGTTTTCGAATATGTAGTCATGCCGTTTGGCTCGAAGAATGCCGGTGCGACATATCAAAGAGCCATGAATTTGATCTTTCACGACATACCGGGAAAGGTTTTAGAGGTATACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

412

Amino Acids

47.66

Weight (kDa)

9.14

Isoelectric Point (pI)

66.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 942
AatII GACGTC 1 cut(s) 341
Acc36I ACCTGC 1 cut(s) 456
Acc65I GGTACC 1 cut(s) 632
AccB1I GGYRCC 2 cut(s) 632, 1046
AccI GTMKAC 2 cut(s) 341, 1231
AccII CGCG 7 cut(s) 282, 398, 933, 992, 1010, 1052, 1119
AccIII TCCGGA 2 cut(s) 535, 904
AclWI GGATC 2 cut(s) 285, 527
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 1 cut(s) 1190
AcyI GRCGYC 1 cut(s) 338
AfaI GTAC 4 cut(s) 141, 555, 634, 743
AfiI CCNNNNNNNGG 2 cut(s) 203, 814
AgeI ACCGGT 1 cut(s) 876
AgsI TTSAA 2 cut(s) 721, 952
AjiI CACGTC 1 cut(s) 345
AjnI CCWGG 2 cut(s) 243, 766
AloI GAACNNNNNNTCC 2 cut(s) 517, 549
AluBI AGCT 2 cut(s) 327, 565
AluI AGCT 2 cut(s) 327, 565
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 1 cut(s) 430
AlwI GGATC 2 cut(s) 285, 527
Ama87I CYCGRG 3 cut(s) 218, 422, 628
Aor13HI TCCGGA 2 cut(s) 535, 904
AoxI GGCC 5 cut(s) 54, 253, 503, 769, 1018
ApeKI GCWGC 2 cut(s) 418, 478
ApoI RAATTY 1 cut(s) 1190
ArsI GACNNNNNNTTYG 2 cut(s) 1123, 1155
AsiGI ACCGGT 1 cut(s) 876
Asp718I GGTACC 1 cut(s) 632
AspS9I GGNCC 3 cut(s) 352, 503, 770
AsuC2I CCSGG 4 cut(s) 629, 630, 756, 1213
AsuHPI GGTGA 4 cut(s) 218, 352, 756, 1051
AsuII TTCGAA 1 cut(s) 1129
AvaI CYCGRG 3 cut(s) 218, 422, 628
AvaII GGWCC 1 cut(s) 352
BaeI ACNNNNGTAYC 2 cut(s) 616, 649
BalI TGGCCA 1 cut(s) 56
BanI GGYRCC 2 cut(s) 632, 1046
BarI GAAGNNNNNNTAC 2 cut(s) 537, 569
BauI CACGAG 1 cut(s) 58
BbsI GAAGAC 2 cut(s) 503, 1087
Bbv12I GWGCWC 1 cut(s) 393
BbvI GCAGC 2 cut(s) 405, 490
BccI CCATC 1 cut(s) 89
BceAI ACGGC 3 cut(s) 181, 1060, 1130
BciT130I CCWGG 2 cut(s) 245, 768
BcnI CCSGG 4 cut(s) 629, 630, 756, 1213
BcoDI GTCTC 1 cut(s) 430
BfaI CTAG 3 cut(s) 674, 681, 713
BfuAI ACCTGC 1 cut(s) 456
BglI GCCNNNNNGGC 1 cut(s) 1111
BisI GCNGC 5 cut(s) 159, 419, 479, 482, 1106
BlsI GCNGC 5 cut(s) 160, 420, 480, 483, 1107
Bme1390I CCNGG 6 cut(s) 245, 629, 630, 756, 768, 1213
Bme18I GGWCC 1 cut(s) 352
BmeT110I CYCGRG 3 cut(s) 218, 422, 628
BmgBI CACGTC 1 cut(s) 345
BmgT120I GGNCC 3 cut(s) 352, 503, 770
BmiI GGNNCC 6 cut(s) 180, 296, 353, 515, 634, 1048
BmrFI CCNGG 6 cut(s) 245, 629, 630, 756, 768, 1213
BmsI GCATC 2 cut(s) 95, 861
BpiI GAAGAC 2 cut(s) 503, 1087
Bpu10I CCTNAGC 1 cut(s) 192
Bpu14I TTCGAA 1 cut(s) 1129
BpuMI CCSGG 4 cut(s) 629, 630, 756, 1213
BsaBI GATNNNNATC 1 cut(s) 975
BsaHI GRCGYC 1 cut(s) 338
BsaJI CCNNGG 4 cut(s) 597, 628, 1050, 1109
BsaWI WCCGGW 4 cut(s) 297, 535, 876, 904
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 814
Bse118I RCCGGY 4 cut(s) 411, 876, 985, 1164
Bse3DI GCAATG 1 cut(s) 153
Bse8I GATNNNNATC 1 cut(s) 975
BseAI TCCGGA 2 cut(s) 535, 904
BseBI CCWGG 2 cut(s) 245, 768
BseDI CCNNGG 4 cut(s) 597, 628, 1050, 1109
BseGI GGATG 1 cut(s) 547
BseJI GATNNNNATC 1 cut(s) 975
BseLI CCNNNNNNNGG 2 cut(s) 203, 814
BseMI GCAATG 1 cut(s) 153
BseXI GCAGC 2 cut(s) 405, 490
Bsh1236I CGCG 7 cut(s) 282, 398, 933, 992, 1010, 1052, 1119
Bsh1285I CGRYCG 3 cut(s) 302, 416, 990
BshFI GGCC 5 cut(s) 56, 255, 505, 771, 1020
BshNI GGYRCC 2 cut(s) 632, 1046
BshTI ACCGGT 1 cut(s) 876
BsiEI CGRYCG 3 cut(s) 302, 416, 990
BsiHKAI GWGCWC 1 cut(s) 393
BsiHKCI CYCGRG 3 cut(s) 218, 422, 628
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 2 cut(s) 203, 814
BsmAI GTCTC 1 cut(s) 430
BsmFI GGGAC 1 cut(s) 365
BsmI GAATGC 2 cut(s) 1064, 1166
BsnI GGCC 5 cut(s) 56, 255, 505, 771, 1020
BsoBI CYCGRG 3 cut(s) 218, 422, 628
Bsp119I TTCGAA 1 cut(s) 1129
Bsp1286I GDGCHC 1 cut(s) 393
Bsp13I TCCGGA 2 cut(s) 535, 904
Bsp143I GATC 3 cut(s) 277, 532, 1195
BspANI GGCC 5 cut(s) 56, 255, 505, 771, 1020
BspEI TCCGGA 2 cut(s) 535, 904
BspFNI CGCG 7 cut(s) 282, 398, 933, 992, 1010, 1052, 1119
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 6 cut(s) 180, 296, 353, 515, 634, 1048
BspMI ACCTGC 1 cut(s) 456
BspPI GGATC 2 cut(s) 285, 527
BspT104I TTCGAA 1 cut(s) 1129
BspT107I GGYRCC 2 cut(s) 632, 1046
BsrDI GCAATG 1 cut(s) 153
BsrFI RCCGGY 4 cut(s) 411, 876, 985, 1164
BssAI RCCGGY 4 cut(s) 411, 876, 985, 1164
BssECI CCNNGG 4 cut(s) 597, 628, 1050, 1109
BssMI GATC 3 cut(s) 277, 532, 1195
BssNAI GTATAC 1 cut(s) 1232
BssNI GRCGYC 1 cut(s) 338
BssSI CACGAG 1 cut(s) 58
BssT1I CCWWGG 1 cut(s) 597
Bst1107I GTATAC 1 cut(s) 1232
Bst2BI CACGAG 1 cut(s) 58
Bst2UI CCWGG 2 cut(s) 245, 768
Bst4CI ACNGT 2 cut(s) 461, 637
Bst6I CTCTTC 4 cut(s) 258, 440, 540, 819
BstACI GRCGYC 1 cut(s) 338
BstBI TTCGAA 1 cut(s) 1129
BstC8I GCNNGC 5 cut(s) 213, 409, 567, 644, 1018
BstDEI CTNAG 1 cut(s) 192
BstDSI CCRYGG 1 cut(s) 1050
BstF5I GGATG 1 cut(s) 547
BstFNI CGCG 7 cut(s) 282, 398, 933, 992, 1010, 1052, 1119
BstKTI GATC 3 cut(s) 280, 535, 1198
BstMAI GTCTC 1 cut(s) 430
BstMBI GATC 3 cut(s) 277, 532, 1195
BstMCI CGRYCG 3 cut(s) 302, 416, 990
BstMWI GCNNNNNNNGC 3 cut(s) 404, 490, 1111
BstNI CCWGG 2 cut(s) 245, 768
BstNSI RCATGY 1 cut(s) 754
BstSCI CCNGG 6 cut(s) 243, 627, 628, 754, 766, 1211
BstUI CGCG 7 cut(s) 282, 398, 933, 992, 1010, 1052, 1119
BstV1I GCAGC 2 cut(s) 405, 490
BstV2I GAAGAC 2 cut(s) 503, 1087
BstZ17I GTATAC 1 cut(s) 1232
BsuRI GGCC 5 cut(s) 56, 255, 505, 771, 1020
BtgI CCRYGG 1 cut(s) 1050
BtgZI GCGATG 1 cut(s) 67
BtrI CACGTC 1 cut(s) 345
BtsCI GGATG 1 cut(s) 547
BveI ACCTGC 1 cut(s) 456
Cac8I GCNNGC 5 cut(s) 213, 409, 567, 644, 1018
CciI TCATGA 1 cut(s) 73
Cfr10I RCCGGY 4 cut(s) 411, 876, 985, 1164
Cfr13I GGNCC 3 cut(s) 352, 503, 770
Cfr42I CCGCGG 1 cut(s) 1053
Cfr9I CCCGGG 1 cut(s) 628
CseI GACGC 1 cut(s) 1016
CsiI ACCWGGT 1 cut(s) 243
Csp6I GTAC 4 cut(s) 140, 554, 633, 742
CspAI ACCGGT 1 cut(s) 876
CviAII CATG 8 cut(s) 74, 379, 751, 982, 1022, 1039, 1142, 1187
CviQI GTAC 4 cut(s) 140, 554, 633, 742
DdeI CTNAG 1 cut(s) 192
DpnI GATC 3 cut(s) 279, 534, 1197
DpnII GATC 3 cut(s) 277, 532, 1195
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 4 cut(s) 258, 440, 540, 819
EarI CTCTTC 4 cut(s) 258, 440, 540, 819
EciI GGCGGA 2 cut(s) 590, 1092
Eco130I CCWWGG 1 cut(s) 597
Eco147I AGGCCT 1 cut(s) 255
Eco32I GATATC 2 cut(s) 306, 1057
Eco47I GGWCC 1 cut(s) 352
Eco88I CYCGRG 3 cut(s) 218, 422, 628
EcoO109I RGGNCCY 1 cut(s) 503
EcoRII CCWGG 2 cut(s) 243, 766
EcoRV GATATC 2 cut(s) 306, 1057
EcoT14I CCWWGG 1 cut(s) 597
EcoT22I ATGCAT 1 cut(s) 843
ErhI CCWWGG 1 cut(s) 597
FaeI CATG 8 cut(s) 77, 382, 754, 985, 1025, 1042, 1145, 1190
FalI AAGNNNNNCTT 2 cut(s) 713, 745
FaqI GGGAC 1 cut(s) 365
FatI CATG 8 cut(s) 73, 378, 750, 981, 1021, 1038, 1141, 1186
FauI CCCGC 3 cut(s) 403, 498, 1112
FblI GTMKAC 2 cut(s) 341, 1231
Fnu4HI GCNGC 5 cut(s) 159, 419, 479, 482, 1106
FokI GGATG 1 cut(s) 554
Fsp4HI GCNGC 5 cut(s) 159, 419, 479, 482, 1106
FspBI CTAG 3 cut(s) 674, 681, 713
GluI GCNGC 5 cut(s) 159, 419, 479, 482, 1106
HaeIII GGCC 5 cut(s) 56, 255, 505, 771, 1020
HgaI GACGC 1 cut(s) 1016
Hin1I GRCGYC 1 cut(s) 338
Hin1II CATG 8 cut(s) 77, 382, 754, 985, 1025, 1042, 1145, 1190
HincII GTYRAC 3 cut(s) 112, 342, 625
HindII GTYRAC 3 cut(s) 112, 342, 625
HindIII AAGCTT 1 cut(s) 325
HinfI GANTC 6 cut(s) 77, 221, 266, 357, 928, 952
HpaI GTTAAC 1 cut(s) 112
HphI GGTGA 4 cut(s) 218, 352, 756, 1051
Hpy166II GTNNAC 5 cut(s) 112, 342, 625, 1006, 1232
Hpy188III TCNNGA 5 cut(s) 74, 424, 536, 905, 1203
Hpy8I GTNNAC 5 cut(s) 112, 342, 625, 1006, 1232
Hpy99I CGWCG 5 cut(s) 343, 346, 368, 793, 1074
HpyAV CCTTC 2 cut(s) 613, 1045
HpyCH4III ACNGT 2 cut(s) 461, 637
HpyCH4IV ACGT 3 cut(s) 338, 344, 366
HpyCH4V TGCA 4 cut(s) 375, 465, 841, 852
HpyF10VI GCNNNNNNNGC 3 cut(s) 404, 490, 1111
HpyF3I CTNAG 1 cut(s) 192
HpySE526I ACGT 3 cut(s) 338, 344, 366
Hsp92I GRCGYC 1 cut(s) 338
Hsp92II CATG 8 cut(s) 77, 382, 754, 985, 1025, 1042, 1145, 1190
Kpn2I TCCGGA 2 cut(s) 535, 904
KpnI GGTACC 1 cut(s) 636
KspAI GTTAAC 1 cut(s) 112
KspI CCGCGG 1 cut(s) 1053
Kzo9I GATC 3 cut(s) 277, 532, 1195
LmnI GCTCC 2 cut(s) 396, 574
Lsp1109I GCAGC 2 cut(s) 405, 490
LweI GCATC 2 cut(s) 95, 861
MabI ACCWGGT 1 cut(s) 243
MaeI CTAG 3 cut(s) 674, 681, 713
MaeII ACGT 3 cut(s) 338, 344, 366
MaeIII GTNAC 5 cut(s) 222, 358, 450, 468, 762
MalI GATC 3 cut(s) 279, 534, 1197
MboI GATC 3 cut(s) 277, 532, 1195
MhlI GDGCHC 1 cut(s) 393
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 3 cut(s) 518, 1025, 1190
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 4 cut(s) 230, 275, 366, 937
MmeI TCCRAC 2 cut(s) 293, 561
Mox20I TGGCCA 1 cut(s) 56
Mph1103I ATGCAT 1 cut(s) 843
MroI TCCGGA 2 cut(s) 535, 904
MscI TGGCCA 1 cut(s) 56
MseI TTAA 3 cut(s) 111, 521, 603
Msp20I TGGCCA 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 1052
MspR9I CCNGG 6 cut(s) 245, 629, 630, 756, 768, 1213
Mva1269I GAATGC 2 cut(s) 1064, 1166
MvaI CCWGG 2 cut(s) 245, 768
MvnI CGCG 7 cut(s) 282, 398, 933, 992, 1010, 1052, 1119
MwoI GCNNNNNNNGC 3 cut(s) 404, 490, 1111
NciI CCSGG 4 cut(s) 629, 630, 756, 1213
NdeII GATC 3 cut(s) 277, 532, 1195
NlaIII CATG 8 cut(s) 77, 382, 754, 985, 1025, 1042, 1145, 1190
NlaIV GGNNCC 6 cut(s) 180, 296, 353, 515, 634, 1048
NmeAIII GCCGAG 2 cut(s) 268, 1090
NmuCI GTSAC 4 cut(s) 222, 358, 468, 762
NsiI ATGCAT 1 cut(s) 843
NspI RCATGY 1 cut(s) 754
NspV TTCGAA 1 cut(s) 1129
PaeR7I CTCGAG 2 cut(s) 218, 422
PagI TCATGA 1 cut(s) 73
PceI AGGCCT 1 cut(s) 255
PctI GAATGC 2 cut(s) 1064, 1166
PfeI GAWTC 2 cut(s) 77, 952
PflFI GACNNNGTC 1 cut(s) 356
PinAI ACCGGT 1 cut(s) 876
PkrI GCNGC 5 cut(s) 160, 420, 480, 483, 1107
PleI GAGTC 4 cut(s) 229, 274, 365, 936
PpsI GAGTC 4 cut(s) 229, 274, 365, 936
PsiI TTATAA 1 cut(s) 942
Psp6I CCWGG 2 cut(s) 243, 766
PspGI CCWGG 2 cut(s) 243, 766
PspN4I GGNNCC 6 cut(s) 180, 296, 353, 515, 634, 1048
PspPI GGNCC 3 cut(s) 352, 503, 770
PspXI VCTCGAGB 1 cut(s) 218
PsyI GACNNNGTC 1 cut(s) 356
RsaI GTAC 4 cut(s) 141, 555, 634, 743
RsaNI GTAC 4 cut(s) 140, 554, 633, 742
SacII CCGCGG 1 cut(s) 1053
SalI GTCGAC 1 cut(s) 340
SaqAI TTAA 3 cut(s) 111, 521, 603
SatI GCNGC 5 cut(s) 159, 419, 479, 482, 1106
Sau3AI GATC 3 cut(s) 277, 532, 1195
Sau96I GGNCC 3 cut(s) 352, 503, 770
SchI GAGTC 4 cut(s) 230, 275, 366, 937
ScrFI CCNGG 6 cut(s) 245, 629, 630, 756, 768, 1213
SduI GDGCHC 1 cut(s) 393
SexAI ACCWGGT 1 cut(s) 243
SfaNI GCATC 2 cut(s) 95, 861
Sfr274I CTCGAG 2 cut(s) 218, 422
Sfr303I CCGCGG 1 cut(s) 1053
SfuI TTCGAA 1 cut(s) 1129
SgrBI CCGCGG 1 cut(s) 1053
SgrDI CGTCGACG 1 cut(s) 340
SinI GGWCC 1 cut(s) 352
SlaI CTCGAG 2 cut(s) 218, 422
SmaI CCCGGG 1 cut(s) 630
SmlI CTYRAG 2 cut(s) 218, 422
SmoI CTYRAG 2 cut(s) 218, 422
Sse9I AATT 3 cut(s) 518, 1025, 1190
SseBI AGGCCT 1 cut(s) 255
SspMI CTAG 3 cut(s) 674, 681, 713
StuI AGGCCT 1 cut(s) 255
StyD4I CCNGG 6 cut(s) 243, 627, 628, 754, 766, 1211
StyI CCWWGG 1 cut(s) 597
TaaI ACNGT 2 cut(s) 461, 637
TaiI ACGT 3 cut(s) 341, 347, 369
TaqI TCGA 9 cut(s) 219, 302, 341, 423, 531, 702, 788, 1129, 1155
TaqII GACCGA 1 cut(s) 369
TasI AATT 3 cut(s) 518, 1025, 1190
TatI WGTACW 2 cut(s) 139, 553
TauI GCSGC 3 cut(s) 161, 484, 1108
TfiI GAWTC 2 cut(s) 77, 952
Tru1I TTAA 3 cut(s) 111, 521, 603
Tru9I TTAA 3 cut(s) 111, 521, 603
TseFI GTSAC 4 cut(s) 222, 358, 468, 762
TseI GCWGC 2 cut(s) 418, 478
Tsp45I GTSAC 4 cut(s) 222, 358, 468, 762
TspDTI ATGAA 6 cut(s) 90, 558, 810, 1027, 1038, 1203
TspGWI ACGGA 2 cut(s) 49, 1058
TspMI CCCGGG 1 cut(s) 628
Tth111I GACNNNGTC 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 352
XapI RAATTY 1 cut(s) 1190
XceI RCATGY 1 cut(s) 754
XcmI CCANNNNNNNNNTGG 1 cut(s) 330
XhoI CTCGAG 2 cut(s) 218, 422
XmaI CCCGGG 1 cut(s) 628
XmiI GTMKAC 2 cut(s) 341, 1231
XspI CTAG 3 cut(s) 674, 681, 713
ZraI GACGTC 1 cut(s) 339
Zsp2I ATGCAT 1 cut(s) 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.