Rmu_sc0011142.1_g000002

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011142.1
OG0000176
Physical Location & Seq
Forward (+)
5948 .. 6325
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011142.1_g000002.1.cds

Sequence Viewer

Length: 378 bp
ctgtacgaaagactatcctcgtacctggtggaaaaagaggcttatgatcggattgcgaccttggaaattgtcaatgaggagttctctgaccaagaacaagaagatgacgaagagattcagttggctccggcagcgctggatgatactcctcctaaggttagggaccctaccgagaaggtcaatcttggaatagtagacaagcccatggaagtggctagtagagactctttagagcctagcgaaaaacataggctcattgatttattactggaattcaaagactgcttcgcggagaaatatgaggacatgccaggcctgtcactggatttggtatgccatcagctacccacactccctgacaggaggcctgtgaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

125

Amino Acids

14.4

Weight (kDa)

4.36

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21383 FvH4_2g06271 FvH4_2g23662 FvH4_2g35580 FvH4_3g27863 FvH4_4g05274 FvH4_4g18553 FvH4_4g21611 FvH4_5g26253 FvH4_5g34301 FvH4_6g31922 FvH4_7g12391
pyrus_communis pycom03g12260 pycom10g07780 pycom12g20020 pycom15g29760 pycom16g11740 pycom976g00240
rosa_chinensis RchiOBHm_Chr2g0121061 RchiOBHm_Chr5g0033131 RchiOBHm_Chr6g0263211
rosa_multiflora Rmu_co7975030.1_g000001 Rmu_co8030416.1_g000001 Rmu_co8076880.1_g000001 Rmu_co8153002.1_g000001 Rmu_co8164780.1_g000001 Rmu_co8199530.1_g000001 Rmu_co8226177.1_g000002 Rmu_co8305941.1_g000001 Rmu_co8331357.1_g000001 Rmu_co8346103.1_g000001 Rmu_co8386779.1_g000001 Rmu_co8415559.1_g000002 Rmu_co8420415.1_g000002 Rmu_co8517321.1_g000001 Rmu_co8522293.1_g000007 Rmu_sc0000029.1_g000020 Rmu_sc0000147.1_g000010 Rmu_sc0000240.1_g000068 Rmu_sc0000276.1_g000040 Rmu_sc0000322.1_g000020 Rmu_sc0000338.1_g000010 Rmu_sc0000347.1_g000012 Rmu_sc0000461.1_g000002 Rmu_sc0000559.1_g000028 Rmu_sc0000594.1_g000033 Rmu_sc0000613.1_g000009 Rmu_sc0000704.1_g000027 Rmu_sc0000740.1_g000054 Rmu_sc0001051.1_g000021 Rmu_sc0001069.1_g000038 Rmu_sc0001113.1_g000021 Rmu_sc0001250.1_g000030 Rmu_sc0001395.1_g000017 Rmu_sc0001396.1_g000005 Rmu_sc0001738.1_g000043 Rmu_sc0001887.1_g000006 Rmu_sc0001898.1_g000006 Rmu_sc0002014.1_g000019 Rmu_sc0002270.1_g000036 Rmu_sc0002532.1_g000023 Rmu_sc0002638.1_g000047 Rmu_sc0002690.1_g000020 Rmu_sc0002784.1_g000048 Rmu_sc0002882.1_g000024 Rmu_sc0002934.1_g000006 Rmu_sc0002934.1_g000007 Rmu_sc0002938.1_g000028 Rmu_sc0003044.1_g000017 Rmu_sc0003252.1_g000007 Rmu_sc0003737.1_g000023 Rmu_sc0003809.1_g000028 Rmu_sc0003809.1_g000029 Rmu_sc0003936.1_g000019 Rmu_sc0004001.1_g000011 Rmu_sc0004059.1_g000014 Rmu_sc0004101.1_g000022 Rmu_sc0004174.1_g000017 Rmu_sc0004206.1_g000017 Rmu_sc0004206.1_g000018 Rmu_sc0004243.1_g000008 Rmu_sc0004283.1_g000024 Rmu_sc0004549.1_g000015 Rmu_sc0004718.1_g000011 Rmu_sc0004941.1_g000039 Rmu_sc0005112.1_g000017 Rmu_sc0005125.1_g000028 Rmu_sc0005143.1_g000007 Rmu_sc0005147.1_g000009 Rmu_sc0005260.1_g000001 Rmu_sc0005322.1_g000010 Rmu_sc0005454.1_g000008 Rmu_sc0005652.1_g000020 Rmu_sc0005659.1_g000006 Rmu_sc0006059.1_g000057 Rmu_sc0006129.1_g000021 Rmu_sc0006300.1_g000007 Rmu_sc0006561.1_g000011 Rmu_sc0007612.1_g000036 Rmu_sc0007856.1_g000004 Rmu_sc0009191.1_g000019 Rmu_sc0009191.1_g000020 Rmu_sc0009481.1_g000010 Rmu_sc0009901.1_g000002 Rmu_sc0009968.1_g000001 Rmu_sc0010072.1_g000006 Rmu_sc0010090.1_g000011 Rmu_sc0010674.1_g000003 Rmu_sc0011142.1_g000002 Rmu_sc0011514.1_g000004 Rmu_sc0011534.1_g000006 Rmu_sc0011803.1_g000007 Rmu_sc0013216.1_g000009 Rmu_sc0014482.1_g000002 Rmu_sc0015325.1_g000008 Rmu_sc0019673.1_g000001 Rmu_sc0021680.1_g000002 Rmu_sc0022642.1_g000001 Rmu_sc0023778.1_g000005 Rmu_sc0023942.1_g000001 Rmu_sc0024195.1_g000012 Rmu_sc0026069.1_g000002 Rmu_sc0026814.1_g000001 Rmu_sc0028519.1_g000001 Rmu_sc0031008.1_g000002 Rmu_sc0031197.1_g000001 Rmu_sc0031293.1_g000001 Rmu_sc0031294.1_g000001 Rmu_sc0031646.1_g000001 Rmu_sc0034742.1_g000002 Rmu_sc0036436.1_g000001 Rmu_sc0036437.1_g000001 Rmu_sc0042802.1_g000001 Rmu_ssc0000127.1_g000052 Rmu_ssc0000262.1_g000019 Rmu_ssc0000398.1_g000007 Rmu_ssc0000480.1_g000050
rosa_roxburghii Rroxscaffold_174G00435290 Rroxscaffold_177G00434320 Rroxscaffold_178G00437300 Rroxscaffold_180G00433410 Rroxscaffold_1G00010240 Rroxscaffold_1G00020730 Rroxscaffold_1G00059300 Rroxscaffold_2G00077380 Rroxscaffold_2G00077690 Rroxscaffold_3G00218240 Rroxscaffold_3G00223180 Rroxscaffold_3G00223190 Rroxscaffold_3G00255440 Rroxscaffold_3G00255450 Rroxscaffold_3G00259080 Rroxscaffold_3G00274700 Rroxscaffold_4G00306470 Rroxscaffold_4G00316750 Rroxscaffold_4G00323390 Rroxscaffold_4G00331230 Rroxscaffold_5G00339240 Rroxscaffold_5G00339550 Rroxscaffold_5G00378050 Rroxscaffold_6G00392800 Rroxscaffold_7G00163490 Rroxscaffold_7G00199370
rosa_wichuraiana Rw0G015150 Rw1G007650 Rw3G005560 Rw3G028190 Rw5G030760 Rw6G016740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 195
AccII CGCG 1 cut(s) 290
AciI CCGC 1 cut(s) 290
AcsI RAATTY 1 cut(s) 272
AfaI GTAC 2 cut(s) 5, 23
AfeI AGCGCT 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 1 cut(s) 277
AjnI CCWGG 2 cut(s) 24, 310
AluBI AGCT 1 cut(s) 343
AluI AGCT 1 cut(s) 343
Alw26I GTCTC 1 cut(s) 216
Aor51HI AGCGCT 1 cut(s) 135
AoxI GGCC 2 cut(s) 313, 365
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 272
Asp700I GAANNNNTTC 1 cut(s) 114
AspLEI GCGC 1 cut(s) 136
AspS9I GGNCC 1 cut(s) 163
AvaII GGWCC 1 cut(s) 163
AxyI CCTNAGG 1 cut(s) 153
BbvI GCAGC 1 cut(s) 143
BccI CCATC 1 cut(s) 345
BciT130I CCWGG 2 cut(s) 26, 312
BcoDI GTCTC 1 cut(s) 216
BfaI CTAG 2 cut(s) 216, 237
BfoI RGCGCY 1 cut(s) 137
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 2 cut(s) 26, 312
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 3 cut(s) 126, 164, 165
BmrFI CCNGG 2 cut(s) 26, 312
BplI GAGNNNNNCTC 2 cut(s) 68, 100
BsaJI CCNNGG 2 cut(s) 60, 204
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse1I ACTGG 2 cut(s) 273, 327
Bse21I CCTNAGG 1 cut(s) 153
BseBI CCWGG 2 cut(s) 26, 312
BseDI CCNNGG 2 cut(s) 60, 204
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 322
BseNI ACTGG 2 cut(s) 273, 327
BseRI GAGGAG 2 cut(s) 92, 138
BseXI GCAGC 1 cut(s) 143
Bsh1236I CGCG 1 cut(s) 290
BshFI GGCC 2 cut(s) 315, 367
BsiSI CCGG 1 cut(s) 128
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 1 cut(s) 216
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 2 cut(s) 315, 367
Bsp143I GATC 1 cut(s) 46
Bsp19I CCATGG 1 cut(s) 204
BspACI CCGC 1 cut(s) 290
BspANI GGCC 2 cut(s) 315, 367
BspFNI CGCG 1 cut(s) 290
BspLI GGNNCC 3 cut(s) 126, 164, 165
BsrI ACTGG 2 cut(s) 273, 327
BssECI CCNNGG 2 cut(s) 60, 204
BssMI GATC 1 cut(s) 46
BssT1I CCWWGG 2 cut(s) 60, 204
Bst2UI CCWGG 2 cut(s) 26, 312
Bst6I CTCTTC 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 153
BstDSI CCRYGG 1 cut(s) 204
BstF5I GGATG 1 cut(s) 145
BstFNI CGCG 1 cut(s) 290
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 1 cut(s) 216
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 2 cut(s) 26, 312
BstNSI RCATGY 1 cut(s) 310
BstSCI CCNGG 2 cut(s) 24, 310
BstUI CGCG 1 cut(s) 290
BstV1I GCAGC 1 cut(s) 143
BstXI CCANNNNNNTGG 1 cut(s) 211
Bsu36I CCTNAGG 1 cut(s) 153
BsuRI GGCC 2 cut(s) 315, 367
BtgI CCRYGG 1 cut(s) 204
BtsCI GGATG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 320
CfoI GCGC 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 163
CsiI ACCWGGT 1 cut(s) 24
Csp6I GTAC 2 cut(s) 4, 22
CviAII CATG 2 cut(s) 205, 307
CviJI RGCY 9 cut(s) 41, 125, 202, 215, 235, 253, 315, 343, 367
CviKI_1 RGCY 9 cut(s) 41, 125, 202, 215, 235, 253, 315, 343, 367
CviQI GTAC 2 cut(s) 4, 22
DdeI CTNAG 1 cut(s) 153
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco130I CCWWGG 2 cut(s) 60, 204
Eco147I AGGCCT 2 cut(s) 315, 367
Eco47I GGWCC 1 cut(s) 163
Eco47III AGCGCT 1 cut(s) 135
Eco81I CCTNAGG 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 163
EcoRI GAATTC 1 cut(s) 272
EcoRII CCWGG 2 cut(s) 24, 310
EcoT14I CCWWGG 2 cut(s) 60, 204
ErhI CCWWGG 2 cut(s) 60, 204
FaeI CATG 2 cut(s) 208, 310
FaiI YATR 6 cut(s) 45, 206, 249, 300, 308, 334
FaqI GGGAC 1 cut(s) 176
FatI CATG 2 cut(s) 204, 306
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 2 cut(s) 216, 237
GlaI GCGC 1 cut(s) 135
GluI GCNGC 1 cut(s) 132
HaeII RGCGCY 1 cut(s) 137
HaeIII GGCC 2 cut(s) 315, 367
HapII CCGG 1 cut(s) 128
HhaI GCGC 1 cut(s) 136
Hin1II CATG 2 cut(s) 208, 310
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HinfI GANTC 2 cut(s) 115, 224
HpaII CCGG 1 cut(s) 128
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 2 cut(s) 51, 88
Hpy8I GTNNAC 1 cut(s) 196
HpyAV CCTTC 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 153
Hsp92II CATG 2 cut(s) 208, 310
HspAI GCGC 1 cut(s) 134
KflI GGGWCCC 1 cut(s) 163
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 1 cut(s) 130
Lsp1109I GCAGC 1 cut(s) 143
MabI ACCWGGT 1 cut(s) 24
MaeI CTAG 2 cut(s) 216, 237
MaeIII GTNAC 1 cut(s) 318
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 2 cut(s) 113, 122
MluCI AATT 2 cut(s) 66, 272
MlyI GAGTC 1 cut(s) 218
MnlI CCTC 6 cut(s) 28, 31, 70, 159, 295, 357
MroXI GAANNNNTTC 1 cut(s) 114
MslI CAYNNNNRTG 1 cut(s) 209
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 2 cut(s) 26, 312
MvaI CCWGG 2 cut(s) 26, 312
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 131
NcoI CCATGG 1 cut(s) 204
NdeII GATC 1 cut(s) 46
NlaIII CATG 2 cut(s) 208, 310
NlaIV GGNNCC 3 cut(s) 126, 164, 165
NmuCI GTSAC 1 cut(s) 318
NspI RCATGY 1 cut(s) 310
PceI AGGCCT 2 cut(s) 315, 367
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
PpuMI RGGWCCY 1 cut(s) 163
Psp5II RGGWCCY 1 cut(s) 163
Psp6I CCWGG 2 cut(s) 24, 310
PspGI CCWGG 2 cut(s) 24, 310
PspN4I GGNNCC 3 cut(s) 126, 164, 165
PspPI GGNCC 1 cut(s) 163
PspPPI RGGWCCY 1 cut(s) 163
RsaI GTAC 2 cut(s) 5, 23
RsaNI GTAC 2 cut(s) 4, 22
RseI CAYNNNNRTG 1 cut(s) 209
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 2 cut(s) 26, 312
SetI ASST 5 cut(s) 27, 62, 159, 180, 345
SexAI ACCWGGT 1 cut(s) 24
SinI GGWCC 1 cut(s) 163
SmiMI CAYNNNNRTG 1 cut(s) 209
Sse9I AATT 2 cut(s) 66, 272
SseBI AGGCCT 2 cut(s) 315, 367
SsiI CCGC 1 cut(s) 290
SspMI CTAG 2 cut(s) 216, 237
StuI AGGCCT 2 cut(s) 315, 367
StyD4I CCNGG 2 cut(s) 24, 310
StyI CCWWGG 2 cut(s) 60, 204
TasI AATT 2 cut(s) 66, 272
TfiI GAWTC 1 cut(s) 115
TscAI CASTG 1 cut(s) 327
TseFI GTSAC 1 cut(s) 318
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 318
TspRI CASTG 1 cut(s) 327
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 1 cut(s) 272
XceI RCATGY 1 cut(s) 310
XmiI GTMKAC 1 cut(s) 195
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 2 cut(s) 216, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.