Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000173

Physical Location & Seq

Genomic Coordinates Reverse (-)

29684236 .. 29688800

Gene Structure 4565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G78950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2280 bp

ATGTGGAGGTTGAAGATAGGAGAAGGGAACGGAGATGATCCCTACTTATTCACTACTAACAACTTCGCCGGACGACAAACATGGGAGTTTGATCCTGACGGAGGCTCGCCGGAGGAAAGACACTCCGTCGTTGAGGCTCGCCGGATTTTCTACGACAATCGTTTTCATGTTAAAGCAAGCAGCGATCTCTTGTGGCGCATGCAGTTTCTGAGGGAGAAAAAGTTTGAGCAACGGATAGCTCCGGTGAAAGTTGAAGACTCCGAGAAGGTAACCTTTGAAACGGCGACGAGTGCATTACGGAGAGGTATTCATTTCTTCTCGGCGTTGCAGGCCAGCGACGGTCACTGGCCGGCGGAAAATGCCGGCCCTTTGTTTTTCCTTCCGCCACTGGTGTTTTGTCTTTACATAACGGGACATCTTGATGAAGTGTTCACTTCAGAACATCGAAAAGAGATTCTTCGATACATCTACTGTCACCAGAAGGAAGATGGTGGGTGGGGATTACACATTGAAGGTCATAGCACAATGTTCTGTACCACGTTGAATTACATATGTATGCGTATACTTGGAGAAAGTCCTGATGGAGGTCATGATAATGCGTGTGGACGAGCCCGGGAATGGATCCTTAGTCATGGTGGTGTCACCTACATACCTTCTTGGGGTAAAACTTGGCTTTCGATACTTGGTGTATTTGACTGGTCTGGAAGCAACCCAATGCCTCCTGAGTTTTGGATCCTACCTTCTTTCTTTCCCGTGCATCCAGCAAAAATGTGGAGCTACTGCCGGATGGTTTACTTGCCAATGTCGTATCTCTACGGGAAGCGGTTTGTTGGCCCAATAACGTCTCTGATTTTGCAACTACGCAAAGAACTGTACTTACAGCCTTATGAAGAAATCAATTGGATGAAAGTCCGCCATCTTTGTGCAAAGGAAGATACATATTATCCCCGTCCACTGGTTCAAGAGTTGGTATGGGACAGTCTTTACATCTTTGCGGAGCCTTTCCTTGCACGTTGGCCATTTAACAAGCTTCTTAGGGAAAAGGCTCTTCAATTGGCAATGAAACACATACACTATGAAGATGAAAATAGTCGTTATATCACCATTGGGTGTGTTGAAAAGGTACTATGCATGCTAGCTTGTTGGGTTGAAGACCCGAATGGGGATTATTTCAAGAAGCACCTCTCTAGAATCTCCGATTACTTGTGGATGGCTGAAGATGGGATGAAAATGCAGAGCTTTGGAAGTCAACTATGGGATACAGGGTTTGCGATGCAAGCTTTACTTGCAAGCAATCTCTCCAGTGAAATCTCTGATGTACTCAGGAGAGGACATGAGTTCATAAAGAATTCACAGGTTGGAGAGAACCCTTCAGGTGATTACAAAAGCATGTACCGTCATATTTCAAAAGGAGCATGGACTTTTTCTGACCGAGATCACGGATGGCAAGTTTCAGACTGCACAGCTCATGGCTTAAAGTGCTGCCTGCTGTTCTCGATGTTGGCGCCGGATATTGTTGGCCCAAAACAAGACCCCGAGAGACTACATGATTCTGTTAATATCTTGCTCTCTTTACAGAGCAAAAACGGAGGTATGACTGCCTGGGAGCCTGCTGGTGCTCCCAAGTGGTTGGAATTGCTCAATCCCACAGAAATGTTTTCCGACATTGTGATTGAGCATGAGTACAGTGAATGTACATCGTCTGCAATCCAAGCATTGAGTCTTTTCAAGCAACTCTACCCTGATCACAGGACAACAGAGATCACCGCTTTCATCAAGAAAGCTGCGGAATACCTAGAAAACATGCAAACACGTGATGGTTCATGGTATGGGAACTGGGGCATTTGCTTCACGTACGGTACATGGTTTGCTCTTGCAGGCTTAGCAGCTGCGGGTAAGACTTTTAACGACTGTGAGGCAATACGCAAAGGCGTTCAGTTTCTTCTTGCAGCTCAGAAAGACAACGGAGGCTGGGGAGAAAGCTACCTCTCTTGCTCCAAAAAGATATACATAGCACAAGTAGGGGAGATATCAAACGTGGTGCAAACTGCTTGGGCTTTAATGGGTCTCATTCACTCTGGACAGGCAGAGAGAGATCCGATTCCTCTTCACCGTGCTGCGAAACTTATCATCAATTCACAACTGGAGAGTGGAGATTTTCCTCAACAGCAAGCAACCGGAGTGTTTTTGAAGAATTGCACATTACACTACGCTGCATATAGAAACATTCATCCGTTGTGGGCACTCGCAGAATATCGCGCGCGAGTTTCGTTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0031559 GO:0042299 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:0090438 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

759

Amino Acids

86.95

Weight (kDa)

6.26

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQHop_cyclase_N	PF13249	104 - 402	1.3e-36	Squalene-hopene cyclase N-terminal domain
SQHop_cyclase_C	PF13243	416 - 753	2.7e-48	Squalene-hopene cyclase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca	FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica	MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica	Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis	pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis	RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata	RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora	Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii	Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa	Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha	Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana	Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1504
AccI	GTMKAC	1 cut(s)	562
AccII	CGCG	3 cut(s)	2259, 2261, 2263
AciI	CCGC	8 cut(s)	353, 383, 823, 913, 995, 1767, 1787, 1892
AclWI	GGATC	7 cut(s)	32, 86, 616, 629, 727, 740, 2090
AcoI	YGGCCR	2 cut(s)	347, 1016
AcsI	RAATTY	1 cut(s)	1348
AcuI	CTGAAG	3 cut(s)	420, 1236, 1356
AcvI	CACGTG	1 cut(s)	1814
AcyI	GRCGYC	1 cut(s)	1505
AfaI	GTAC	9 cut(s)	535, 875, 1125, 1320, 1394, 1685, 1696, 1856, 1861
AfiI	CCNNNNNNNGG	6 cut(s)	101, 584, 618, 659, 955, 1162
AflIII	ACRYGT	1 cut(s)	1811
AhdI	GACNNNNNGTC	1 cut(s)	125
AjnI	CCWGG	1 cut(s)	1601
Alw21I	GWGCWC	1 cut(s)	1621
Alw26I	GTCTC	3 cut(s)	849, 1534, 2072
AlwI	GGATC	7 cut(s)	32, 86, 616, 629, 727, 740, 2090
AlwNI	CAGNNNCTG	1 cut(s)	208
Ama87I	CYCGRG	2 cut(s)	612, 1535
AoxI	GGCC	6 cut(s)	330, 347, 364, 832, 1016, 1519
ApeKI	GCWGC	8 cut(s)	180, 1482, 1784, 1886, 1889, 1949, 2117, 2213
ApoI	RAATTY	1 cut(s)	1348
AspLEI	GCGC	4 cut(s)	198, 1507, 2261, 2263
AspS9I	GGNCC	3 cut(s)	365, 833, 1520
AsuC2I	CCSGG	2 cut(s)	613, 614
AsuHPI	GGTGA	7 cut(s)	256, 467, 634, 1093, 1388, 1756, 2102
AsuNHI	GCTAGC	1 cut(s)	1135
AvaI	CYCGRG	2 cut(s)	612, 1535
BaeGI	GKGCMC	1 cut(s)	2245
BalI	TGGCCA	1 cut(s)	1018
BamHI	GGATCC	2 cut(s)	621, 732
BanI	GGYRCC	1 cut(s)	1504
BanII	GRGCYC	1 cut(s)	613
BbrPI	CACGTG	1 cut(s)	1814
BbsI	GAAGAC	2 cut(s)	261, 1158
Bbv12I	GWGCWC	1 cut(s)	1621
BbvI	GCAGC	8 cut(s)	192, 1469, 1771, 1876, 1898, 1961, 2104, 2200
BccI	CCATC	8 cut(s)	482, 575, 781, 924, 1204, 1214, 1437, 1811
BceAI	ACGGC	1 cut(s)	297
BciT130I	CCWGG	1 cut(s)	1603
BciVI	GTATCC	1 cut(s)	1252
BclI	TGATCA	1 cut(s)	1744
BcnI	CCSGG	2 cut(s)	613, 614
BcoDI	GTCTC	3 cut(s)	849, 1534, 2072
BfaI	CTAG	3 cut(s)	1136, 1188, 1796
BfoI	RGCGCY	1 cut(s)	1508
BfuI	GTATCC	1 cut(s)	1252
BisI	GCNGC	8 cut(s)	181, 1483, 1785, 1887, 1890, 1950, 2118, 2214
BlpI	GCTNAGC	1 cut(s)	1882
BlsI	GCNGC	8 cut(s)	182, 1484, 1786, 1888, 1891, 1951, 2119, 2215
Bme1390I	CCNGG	3 cut(s)	613, 614, 1603
BmeRI	GACNNNNNGTC	1 cut(s)	125
BmeT110I	CYCGRG	2 cut(s)	612, 1535
BmgT120I	GGNCC	3 cut(s)	365, 833, 1520
BmiI	GGNNCC	5 cut(s)	623, 734, 999, 1506, 1608
BmrFI	CCNGG	3 cut(s)	613, 614, 1603
BmrI	ACTGGG	1 cut(s)	1846
BmsI	GCATC	2 cut(s)	766, 1263
BmtI	GCTAGC	1 cut(s)	1139
BmuI	ACTGGG	1 cut(s)	1846
BpiI	GAAGAC	2 cut(s)	261, 1158
BpmI	CTGGAG	2 cut(s)	1285, 2165
Bpu1102I	GCTNAGC	1 cut(s)	1882
BpuMI	CCSGG	2 cut(s)	613, 614
BsaAI	YACGTR	2 cut(s)	1814, 1854
BsaHI	GRCGYC	1 cut(s)	1505
BsaI	GGTCTC	1 cut(s)	2072
BsaJI	CCNNGG	2 cut(s)	612, 1602
BsaWI	WCCGGW	2 cut(s)	241, 2177
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	6 cut(s)	101, 584, 618, 659, 955, 1162
Bse118I	RCCGGY	2 cut(s)	349, 362
Bse1I	ACTGG	7 cut(s)	350, 393, 701, 960, 1302, 1841, 2148
Bse3DI	GCAATG	1 cut(s)	1065
BseBI	CCWGG	1 cut(s)	1603
BseDI	CCNNGG	2 cut(s)	612, 1602
BseGI	GGATG	7 cut(s)	757, 792, 909, 1215, 1230, 1448, 2230
BseLI	CCNNNNNNNGG	6 cut(s)	101, 584, 618, 659, 955, 1162
BseMI	GCAATG	1 cut(s)	1065
BseMII	CTCAG	4 cut(s)	200, 714, 1336, 1967
BseNI	ACTGG	7 cut(s)	350, 393, 701, 960, 1302, 1841, 2148
BsePI	GCGCGC	1 cut(s)	2259
BseSI	GKGCMC	1 cut(s)	2245
BseXI	GCAGC	8 cut(s)	192, 1469, 1771, 1876, 1898, 1961, 2104, 2200
BseYI	CCCAGC	1 cut(s)	1971
BsgI	GTGCAG	1 cut(s)	1444
Bsh1236I	CGCG	3 cut(s)	2259, 2261, 2263
BshFI	GGCC	6 cut(s)	332, 349, 366, 834, 1018, 1521
BshNI	GGYRCC	1 cut(s)	1504
BsiHKAI	GWGCWC	1 cut(s)	1621
BsiHKCI	CYCGRG	2 cut(s)	612, 1535
BsiWI	CGTACG	1 cut(s)	1854
BslFI	GGGAC	2 cut(s)	426, 989
BslI	CCNNNNNNNGG	6 cut(s)	101, 584, 618, 659, 955, 1162
BsmAI	GTCTC	3 cut(s)	849, 1534, 2072
BsmBI	CGTCTC	1 cut(s)	849
BsmFI	GGGAC	2 cut(s)	426, 989
BsnI	GGCC	6 cut(s)	332, 349, 366, 834, 1018, 1521
Bso31I	GGTCTC	1 cut(s)	2072
BsoBI	CYCGRG	2 cut(s)	612, 1535
Bsp1286I	GDGCHC	3 cut(s)	613, 1621, 2245
Bsp1407I	TGTACA	1 cut(s)	1694
Bsp143I	GATC	9 cut(s)	37, 91, 184, 621, 732, 1435, 1744, 1761, 2095
Bsp1720I	GCTNAGC	1 cut(s)	1882
BspACI	CCGC	8 cut(s)	353, 383, 823, 913, 995, 1767, 1787, 1892
BspANI	GGCC	6 cut(s)	332, 349, 366, 834, 1018, 1521
BspCNI	CTCAG	4 cut(s)	201, 715, 1335, 1966
BspFNI	CGCG	3 cut(s)	2259, 2261, 2263
BspHI	TCATGA	1 cut(s)	589
BspLI	GGNNCC	5 cut(s)	623, 734, 999, 1506, 1608
BspOI	GCTAGC	1 cut(s)	1139
BspPI	GGATC	7 cut(s)	32, 86, 616, 629, 727, 740, 2090
BspQI	GCTCTTC	1 cut(s)	1053
BspT107I	GGYRCC	1 cut(s)	1504
BspTNI	GGTCTC	1 cut(s)	2072
BsrDI	GCAATG	1 cut(s)	1065
BsrFI	RCCGGY	2 cut(s)	349, 362
BsrGI	TGTACA	1 cut(s)	1694
BsrI	ACTGG	7 cut(s)	350, 393, 701, 960, 1302, 1841, 2148
BssAI	RCCGGY	2 cut(s)	349, 362
BssECI	CCNNGG	2 cut(s)	612, 1602
BssHII	GCGCGC	1 cut(s)	2259
BssMI	GATC	9 cut(s)	37, 91, 184, 621, 732, 1435, 1744, 1761, 2095
BssNAI	GTATAC	1 cut(s)	563
BssNI	GRCGYC	1 cut(s)	1505
Bst1107I	GTATAC	1 cut(s)	563
Bst2UI	CCWGG	1 cut(s)	1603
Bst4CI	ACNGT	9 cut(s)	341, 473, 873, 980, 1397, 1688, 1859, 1913, 2114
Bst6I	CTCTTC	2 cut(s)	1053, 2112
BstACI	GRCGYC	1 cut(s)	1505
BstAUI	TGTACA	1 cut(s)	1694
BstBAI	YACGTR	2 cut(s)	1814, 1854
BstDEI	CTNAG	7 cut(s)	209, 626, 723, 1034, 1322, 1882, 1953
BstEII	GGTNACC	1 cut(s)	268
BstENI	CCTNNNNNAGG	2 cut(s)	99, 582
BstF5I	GGATG	7 cut(s)	757, 792, 909, 1215, 1230, 1448, 2230
BstFNI	CGCG	3 cut(s)	2259, 2261, 2263
BstH2I	RGCGCY	1 cut(s)	1508
BstHHI	GCGC	4 cut(s)	198, 1507, 2261, 2263
BstKTI	GATC	9 cut(s)	40, 94, 187, 624, 735, 1438, 1747, 1764, 2098
BstMAI	GTCTC	3 cut(s)	849, 1534, 2072
BstMBI	GATC	9 cut(s)	37, 91, 184, 621, 732, 1435, 1744, 1761, 2095
BstMWI	GCNNNNNNNGC	8 cut(s)	290, 329, 359, 1277, 1286, 1479, 1712, 1883
BstNI	CCWGG	1 cut(s)	1603
BstNSI	RCATGY	4 cut(s)	202, 1135, 1393, 1807
BstPI	GGTNACC	1 cut(s)	268
BstSCI	CCNGG	3 cut(s)	611, 612, 1601
BstSLI	GKGCMC	1 cut(s)	2245
BstUI	CGCG	3 cut(s)	2259, 2261, 2263
BstV1I	GCAGC	8 cut(s)	192, 1469, 1771, 1876, 1898, 1961, 2104, 2200
BstV2I	GAAGAC	2 cut(s)	261, 1158
BstX2I	RGATCY	3 cut(s)	621, 732, 2095
BstXI	CCANNNNNNTGG	1 cut(s)	1630
BstYI	RGATCY	3 cut(s)	621, 732, 2095
BstZ17I	GTATAC	1 cut(s)	563
BsuI	GTATCC	1 cut(s)	1252
BsuRI	GGCC	6 cut(s)	332, 349, 366, 834, 1018, 1521
BtgZI	GCGATG	1 cut(s)	1286
BtsCI	GGATG	7 cut(s)	757, 792, 909, 1215, 1230, 1448, 2230
BtsIMutI	CAGTG	5 cut(s)	343, 386, 953, 1309, 1693
CaiI	CAGNNNCTG	1 cut(s)	208
CciI	TCATGA	1 cut(s)	589
CfoI	GCGC	4 cut(s)	198, 1507, 2261, 2263
Cfr10I	RCCGGY	2 cut(s)	349, 362
Cfr13I	GGNCC	3 cut(s)	365, 833, 1520
Cfr9I	CCCGGG	1 cut(s)	612
Csp6I	GTAC	9 cut(s)	534, 874, 1124, 1319, 1393, 1684, 1695, 1855, 1860
CviQI	GTAC	9 cut(s)	534, 874, 1124, 1319, 1393, 1684, 1695, 1855, 1860
DdeI	CTNAG	7 cut(s)	209, 626, 723, 1034, 1322, 1882, 1953
DinI	GGCGCC	1 cut(s)	1506
DpnI	GATC	9 cut(s)	39, 93, 186, 623, 734, 1437, 1746, 1763, 2097
DpnII	GATC	9 cut(s)	37, 91, 184, 621, 732, 1435, 1744, 1761, 2095
DriI	GACNNNNNGTC	1 cut(s)	125
EaeI	YGGCCR	2 cut(s)	347, 1016
Eam1104I	CTCTTC	2 cut(s)	1053, 2112
Eam1105I	GACNNNNNGTC	1 cut(s)	125
EarI	CTCTTC	2 cut(s)	1053, 2112
EciI	GGCGGA	3 cut(s)	368, 372, 902
Eco24I	GRGCYC	1 cut(s)	613
Eco31I	GGTCTC	1 cut(s)	2072
Eco32I	GATATC	1 cut(s)	2031
Eco57I	CTGAAG	3 cut(s)	420, 1236, 1356
Eco72I	CACGTG	1 cut(s)	1814
Eco88I	CYCGRG	2 cut(s)	612, 1535
Eco91I	GGTNACC	1 cut(s)	268
EcoNI	CCTNNNNNAGG	2 cut(s)	99, 582
EcoO65I	GGTNACC	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	1348
EcoRII	CCWGG	1 cut(s)	1601
EcoRV	GATATC	1 cut(s)	2031
EcoT22I	ATGCAT	1 cut(s)	1133
EcoT38I	GRGCYC	1 cut(s)	613
EgeI	GGCGCC	1 cut(s)	1506
EheI	GGCGCC	1 cut(s)	1506
Esp3I	CGTCTC	1 cut(s)	849
FalI	AAGNNNNNCTT	6 cut(s)	257, 289, 441, 473, 1269, 1301
FaqI	GGGAC	2 cut(s)	426, 989
FauI	CCCGC	1 cut(s)	1885
FauNDI	CATATG	1 cut(s)	551
FbaI	TGATCA	1 cut(s)	1744
FblI	GTMKAC	1 cut(s)	562
Fnu4HI	GCNGC	8 cut(s)	181, 1483, 1785, 1887, 1890, 1950, 2118, 2214
FokI	GGATG	7 cut(s)	744, 799, 916, 1222, 1237, 1455, 2217
FriOI	GRGCYC	1 cut(s)	613
Fsp4HI	GCNGC	8 cut(s)	181, 1483, 1785, 1887, 1890, 1950, 2118, 2214
FspBI	CTAG	3 cut(s)	1136, 1188, 1796
GlaI	GCGC	4 cut(s)	197, 1506, 2260, 2262
GluI	GCNGC	8 cut(s)	181, 1483, 1785, 1887, 1890, 1950, 2118, 2214
GsaI	CCCAGC	1 cut(s)	1975
GsuI	CTGGAG	2 cut(s)	1285, 2165
HaeII	RGCGCY	1 cut(s)	1508
HaeIII	GGCC	6 cut(s)	332, 349, 366, 834, 1018, 1521
HhaI	GCGC	4 cut(s)	198, 1507, 2261, 2263
Hin1I	GRCGYC	1 cut(s)	1505
Hin6I	GCGC	4 cut(s)	196, 1505, 2259, 2261
HinP1I	GCGC	4 cut(s)	196, 1505, 2259, 2261
HincII	GTYRAC	1 cut(s)	1250
HindII	GTYRAC	1 cut(s)	1250
HindIII	AAGCTT	2 cut(s)	1028, 1278
HinfI	GANTC	6 cut(s)	257, 454, 1191, 1550, 1720, 2101
HphI	GGTGA	7 cut(s)	256, 467, 634, 1093, 1388, 1756, 2102
Hpy166II	GTNNAC	6 cut(s)	432, 563, 605, 793, 953, 1250
Hpy8I	GTNNAC	6 cut(s)	432, 563, 605, 793, 953, 1250
Hpy99I	CGWCG	3 cut(s)	131, 289, 341
HpyAV	CCTTC	8 cut(s)	17, 259, 389, 475, 506, 663, 750, 1380
HpyCH4III	ACNGT	9 cut(s)	341, 473, 873, 980, 1397, 1688, 1859, 1913, 2114
HpyCH4IV	ACGT	6 cut(s)	539, 842, 1012, 1813, 1853, 2037
HpyF10VI	GCNNNNNNNGC	8 cut(s)	290, 329, 359, 1277, 1286, 1479, 1712, 1883
HpyF3I	CTNAG	7 cut(s)	209, 626, 723, 1034, 1322, 1882, 1953
HpySE526I	ACGT	6 cut(s)	539, 842, 1012, 1813, 1853, 2037
Hsp92I	GRCGYC	1 cut(s)	1505
HspAI	GCGC	4 cut(s)	196, 1505, 2259, 2261
KasI	GGCGCC	1 cut(s)	1504
KroI	GCCGGC	2 cut(s)	349, 362
KroNI	GCCGGC	2 cut(s)	351, 364
Ksp22I	TGATCA	1 cut(s)	1744
Kzo9I	GATC	9 cut(s)	37, 91, 184, 621, 732, 1435, 1744, 1761, 2095
LguI	GCTCTTC	1 cut(s)	1053
LmnI	GCTCC	7 cut(s)	244, 774, 997, 1412, 1606, 1624, 2000
Lsp1109I	GCAGC	8 cut(s)	192, 1469, 1771, 1876, 1898, 1961, 2104, 2200
LweI	GCATC	2 cut(s)	766, 1263
MaeI	CTAG	3 cut(s)	1136, 1188, 1796
MaeII	ACGT	6 cut(s)	539, 842, 1012, 1813, 1853, 2037
MaeIII	GTNAC	4 cut(s)	268, 341, 473, 640
MalI	GATC	9 cut(s)	39, 93, 186, 623, 734, 1437, 1746, 1763, 2097
MauBI	CGCGCGCG	1 cut(s)	2259
MboI	GATC	9 cut(s)	37, 91, 184, 621, 732, 1435, 1744, 1761, 2095
MfeI	CAATTG	2 cut(s)	898, 1052
MflI	RGATCY	3 cut(s)	621, 732, 2095
MhlI	GDGCHC	3 cut(s)	613, 1621, 2245
MlsI	TGGCCA	1 cut(s)	1018
MluCI	AATT	7 cut(s)	544, 898, 1052, 1348, 1634, 2134, 2194
MluNI	TGGCCA	1 cut(s)	1018
Mly113I	GGCGCC	1 cut(s)	1505
MlyI	GAGTC	2 cut(s)	251, 1729
MmeI	TCCRAC	3 cut(s)	1339, 1611, 1686
Mox20I	TGGCCA	1 cut(s)	1018
Mph1103I	ATGCAT	1 cut(s)	1133
MroNI	GCCGGC	2 cut(s)	349, 362
MscI	TGGCCA	1 cut(s)	1018
MseI	TTAA	6 cut(s)	171, 1023, 1475, 1557, 1905, 2060
MslI	CAYNNNNRTG	6 cut(s)	420, 554, 594, 636, 921, 1652
Msp20I	TGGCCA	1 cut(s)	1018
MspA1I	CMGCKG	1 cut(s)	1889
MspR9I	CCNGG	3 cut(s)	613, 614, 1603
MunI	CAATTG	2 cut(s)	898, 1052
MvaI	CCWGG	1 cut(s)	1603
MvnI	CGCG	3 cut(s)	2259, 2261, 2263
MwoI	GCNNNNNNNGC	8 cut(s)	290, 329, 359, 1277, 1286, 1479, 1712, 1883
NaeI	GCCGGC	2 cut(s)	351, 364
NarI	GGCGCC	1 cut(s)	1505
NciI	CCSGG	2 cut(s)	613, 614
NdeI	CATATG	1 cut(s)	551
NdeII	GATC	9 cut(s)	37, 91, 184, 621, 732, 1435, 1744, 1761, 2095
NgoMIV	GCCGGC	2 cut(s)	349, 362
NheI	GCTAGC	1 cut(s)	1135
NlaIV	GGNNCC	5 cut(s)	623, 734, 999, 1506, 1608
NmeAIII	GCCGAG	1 cut(s)	299
NmuCI	GTSAC	3 cut(s)	341, 473, 640
NsiI	ATGCAT	1 cut(s)	1133
NspI	RCATGY	4 cut(s)	202, 1135, 1393, 1807
PaeI	GCATGC	2 cut(s)	202, 1135
PagI	TCATGA	1 cut(s)	589
PauI	GCGCGC	1 cut(s)	2259
PciSI	GCTCTTC	1 cut(s)	1053
PdiI	GCCGGC	2 cut(s)	351, 364
PfeI	GAWTC	4 cut(s)	454, 1191, 1550, 2101
Pfl23II	CGTACG	1 cut(s)	1854
PkrI	GCNGC	8 cut(s)	182, 1484, 1786, 1888, 1891, 1951, 2119, 2215
PleI	GAGTC	2 cut(s)	251, 1728
PluTI	GGCGCC	1 cut(s)	1508
PmaCI	CACGTG	1 cut(s)	1814
PmlI	CACGTG	1 cut(s)	1814
PpsI	GAGTC	2 cut(s)	251, 1728
Ppu21I	YACGTR	2 cut(s)	1814, 1854
Psp6I	CCWGG	1 cut(s)	1601
PspCI	CACGTG	1 cut(s)	1814
PspEI	GGTNACC	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	1971
PspGI	CCWGG	1 cut(s)	1601
PspLI	CGTACG	1 cut(s)	1854
PspN4I	GGNNCC	5 cut(s)	623, 734, 999, 1506, 1608
PspPI	GGNCC	3 cut(s)	365, 833, 1520
PsrI	GAACNNNNNNTAC	2 cut(s)	861, 893
PstNI	CAGNNNCTG	1 cut(s)	208
PsuI	RGATCY	3 cut(s)	621, 732, 2095
PteI	GCGCGC	1 cut(s)	2259
PvuII	CAGCTG	1 cut(s)	1889
RsaI	GTAC	9 cut(s)	535, 875, 1125, 1320, 1394, 1685, 1696, 1856, 1861
RsaNI	GTAC	9 cut(s)	534, 874, 1124, 1319, 1393, 1684, 1695, 1855, 1860
RseI	CAYNNNNRTG	6 cut(s)	420, 554, 594, 636, 921, 1652
SapI	GCTCTTC	1 cut(s)	1053
SaqAI	TTAA	6 cut(s)	171, 1023, 1475, 1557, 1905, 2060
SatI	GCNGC	8 cut(s)	181, 1483, 1785, 1887, 1890, 1950, 2118, 2214
Sau3AI	GATC	9 cut(s)	37, 91, 184, 621, 732, 1435, 1744, 1761, 2095
Sau96I	GGNCC	3 cut(s)	365, 833, 1520
SchI	GAGTC	2 cut(s)	251, 1729
ScrFI	CCNGG	3 cut(s)	613, 614, 1603
SduI	GDGCHC	3 cut(s)	613, 1621, 2245
SfaNI	GCATC	2 cut(s)	766, 1263
SfoI	GGCGCC	1 cut(s)	1506
SmaI	CCCGGG	1 cut(s)	614
SmiMI	CAYNNNNRTG	6 cut(s)	420, 554, 594, 636, 921, 1652
SphI	GCATGC	2 cut(s)	202, 1135
Sse9I	AATT	7 cut(s)	544, 898, 1052, 1348, 1634, 2134, 2194
SsiI	CCGC	8 cut(s)	353, 383, 823, 913, 995, 1767, 1787, 1892
SspDI	GGCGCC	1 cut(s)	1504
SspMI	CTAG	3 cut(s)	1136, 1188, 1796
StyD4I	CCNGG	3 cut(s)	611, 612, 1601
TaaI	ACNGT	9 cut(s)	341, 473, 873, 980, 1397, 1688, 1859, 1913, 2114
TaiI	ACGT	6 cut(s)	542, 845, 1015, 1816, 1856, 2040
TaqI	TCGA	4 cut(s)	445, 460, 677, 1496
TaqII	GACCGA	1 cut(s)	1446
TasI	AATT	7 cut(s)	544, 898, 1052, 1348, 1634, 2134, 2194
TatI	WGTACW	4 cut(s)	873, 1318, 1683, 1694
TfiI	GAWTC	4 cut(s)	454, 1191, 1550, 2101
Tru1I	TTAA	6 cut(s)	171, 1023, 1475, 1557, 1905, 2060
Tru9I	TTAA	6 cut(s)	171, 1023, 1475, 1557, 1905, 2060
TscAI	CASTG	5 cut(s)	350, 393, 960, 1309, 1693
TseFI	GTSAC	3 cut(s)	341, 473, 640
TseI	GCWGC	8 cut(s)	180, 1482, 1784, 1886, 1889, 1949, 2117, 2213
Tsp45I	GTSAC	3 cut(s)	341, 473, 640
TspGWI	ACGGA	9 cut(s)	45, 114, 115, 247, 313, 1455, 1602, 1980, 2223
TspMI	CCCGGG	1 cut(s)	612
TspRI	CASTG	5 cut(s)	350, 393, 960, 1309, 1693
XagI	CCTNNNNNAGG	2 cut(s)	99, 582
XapI	RAATTY	1 cut(s)	1348
XbaI	TCTAGA	1 cut(s)	1187
XceI	RCATGY	4 cut(s)	202, 1135, 1393, 1807
XcmI	CCANNNNNNNNNTGG	2 cut(s)	485, 768
XmaI	CCCGGG	1 cut(s)	612
XmiI	GTMKAC	1 cut(s)	562
XspI	CTAG	3 cut(s)	1136, 1188, 1796
Zsp2I	ATGCAT	1 cut(s)	1133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.