Rh2DG502200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000173
Physical Location & Seq
Forward (+)
72256705 .. 72267450
10746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG502200.1

Sequence Viewer

Length: 285 bp
ATGGGAAGAAAGCTTAGCAGATTCGAGAGGGCAGAAACACAAGCTCTAAAAAACACTTCCTCAAGAGTATTCCGGAATGAGAAAAAACAGAAGGCAAACCCATCTACGGCTATTCAAAATTACGGCTTATATCTGTGTGTGTGTGTCGCAGAGGTGCCTTTTGTGTTACTCACTCTCAGCATGTTGCGTTCTCACTTTGGTCGGGATGGATATATAGCGTTCTCACTTCGGCCGTCAAGGTTACTTGGAAAAGCTTCTAGGGTAACTAAAATTGACAAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.68

Weight (kDa)

10.58

Isoelectric Point (pI)

30.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 154
AccIII TCCGGA 1 cut(s) 72
AcoI YGGCCR 1 cut(s) 230
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 1 cut(s) 116
AluBI AGCT 3 cut(s) 13, 44, 254
AluI AGCT 3 cut(s) 13, 44, 254
Aor13HI TCCGGA 1 cut(s) 72
AoxI GGCC 1 cut(s) 230
Asp700I GAANNNNTTC 1 cut(s) 253
BanI GGYRCC 1 cut(s) 154
BccI CCATC 2 cut(s) 109, 200
BceAI ACGGC 3 cut(s) 123, 139, 217
BfaI CTAG 2 cut(s) 258, 283
BglII AGATCT 1 cut(s) 279
BlpI GCTNAGC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 156
Bpu1102I GCTNAGC 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 46
BsaWI WCCGGW 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 106
BseAI TCCGGA 1 cut(s) 72
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 190
BseX3I CGGCCG 1 cut(s) 230
Bsh1285I CGRYCG 1 cut(s) 233
BshFI GGCC 1 cut(s) 232
BshNI GGYRCC 1 cut(s) 154
BsiEI CGRYCG 1 cut(s) 233
BsiSI CCGG 1 cut(s) 73
BslI CCNNNNNNNGG 1 cut(s) 106
BsnI GGCC 1 cut(s) 232
Bsp13I TCCGGA 1 cut(s) 72
Bsp143I GATC 1 cut(s) 279
Bsp1720I GCTNAGC 1 cut(s) 14
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 1 cut(s) 189
BspEI TCCGGA 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 156
BspT107I GGYRCC 1 cut(s) 154
BssMI GATC 1 cut(s) 279
BstDEI CTNAG 2 cut(s) 14, 176
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 1 cut(s) 282
BstMBI GATC 1 cut(s) 279
BstMCI CGRYCG 1 cut(s) 233
BstNSI RCATGY 1 cut(s) 184
BstX2I RGATCY 1 cut(s) 279
BstYI RGATCY 1 cut(s) 279
BstZI CGGCCG 1 cut(s) 230
BsuRI GGCC 1 cut(s) 232
BtsCI GGATG 1 cut(s) 211
CviAII CATG 1 cut(s) 181
CviJI RGCY 6 cut(s) 13, 44, 110, 126, 232, 254
CviKI_1 RGCY 6 cut(s) 13, 44, 110, 126, 232, 254
DdeI CTNAG 2 cut(s) 14, 176
DpnI GATC 1 cut(s) 281
DpnII GATC 1 cut(s) 279
EaeI YGGCCR 1 cut(s) 230
EagI CGGCCG 1 cut(s) 230
EclXI CGGCCG 1 cut(s) 230
Eco52I CGGCCG 1 cut(s) 230
FaeI CATG 1 cut(s) 184
FaiI YATR 4 cut(s) 130, 182, 213, 215
FatI CATG 1 cut(s) 180
FokI GGATG 1 cut(s) 218
FspBI CTAG 2 cut(s) 258, 283
HaeIII GGCC 1 cut(s) 232
HapII CCGG 1 cut(s) 73
Hin1II CATG 1 cut(s) 184
HindIII AAGCTT 2 cut(s) 11, 252
HinfI GANTC 1 cut(s) 21
HpaII CCGG 1 cut(s) 73
Hpy188III TCNNGA 4 cut(s) 25, 63, 73, 203
HpyAV CCTTC 1 cut(s) 85
HpyF3I CTNAG 2 cut(s) 14, 176
Hsp92II CATG 1 cut(s) 184
Kpn2I TCCGGA 1 cut(s) 72
Kzo9I GATC 1 cut(s) 279
LpnPI CCDG 1 cut(s) 86
MaeI CTAG 2 cut(s) 258, 283
MaeIII GTNAC 3 cut(s) 165, 240, 262
MalI GATC 1 cut(s) 281
MboI GATC 1 cut(s) 279
MboII GAAGA 1 cut(s) 18
MflI RGATCY 1 cut(s) 279
MluCI AATT 2 cut(s) 118, 270
MnlI CCTC 3 cut(s) 21, 70, 145
MroI TCCGGA 1 cut(s) 72
MroXI GAANNNNTTC 1 cut(s) 253
MspI CCGG 1 cut(s) 73
NdeII GATC 1 cut(s) 279
NlaIII CATG 1 cut(s) 184
NlaIV GGNNCC 1 cut(s) 156
NspI RCATGY 1 cut(s) 184
PdmI GAANNNNTTC 1 cut(s) 253
PfeI GAWTC 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 156
PsuI RGATCY 1 cut(s) 279
Sau3AI GATC 1 cut(s) 279
SetI ASST 5 cut(s) 15, 46, 156, 242, 256
SgeI CNNG 9 cut(s) 37, 53, 75, 85, 193, 215, 249, 257, 270
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
Sse9I AATT 2 cut(s) 118, 270
SspMI CTAG 2 cut(s) 258, 283
TaqI TCGA 1 cut(s) 24
TasI AATT 2 cut(s) 118, 270
TfiI GAWTC 1 cut(s) 21
XceI RCATGY 1 cut(s) 184
XmnI GAANNNNTTC 1 cut(s) 253
XspI CTAG 2 cut(s) 258, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.