Rorug02G0407300

Belongs to the terpene cyclase mutase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
51962213 .. 51963389
1177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0407300.1

Sequence Viewer

Length: 549 bp
ATGGCTTCTTTCATGGGGTCTGTCTTGACGGTTTTCTTGGCTCTTGTTGTTGTAAACTCTTCTGCTACGGAATTCCAAGTCGGTGATGAATTTGGTTGGCAGCAGCCTGGCTCAAACAACTCCGCTGTCTACTCTAACTGGGCTTCCAACAACAGGTTTCATGTTGGAGATTCACTCTTTTTCAAGTACAAAAATGATTCAGTTCTTGAGGTCGACAAATGGGGGTATTACCACTGCAACACAAGCCATCCCATCATCGCATTTGATAACGGGAAGAGTATAATGAAGCTCGATAGGTCTGGCCCCTTCTACTTCATCAGTGGAGTCCCAGATCATTGCAAAAATGGCCAGCTACTGCTAGTTGAAGTGATGGAACCTCACCCAATTTCGCAATCTCCACAGTCCATTGCTGACTCACCAGAACCCCATTTGGCTGCAGACTCTCCTGCATCCTCACCAAGTTTAGGAGTTGTGATTTCTATTACACCTTGTTCGCTTGTTATTGCTCTTCTTGTCACAAGTTTAGCTTTAGTGTGTTCAGCGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

182

Amino Acids

19.62

Weight (kDa)

5.13

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 40 - 117 2.4e-23 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 129, 213
AciI CCGC 1 cut(s) 123
AcoI YGGCCR 1 cut(s) 346
AcsI RAATTY 2 cut(s) 71, 89
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 2 cut(s) 153, 464
AgsI TTSAA 2 cut(s) 184, 365
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 3 cut(s) 289, 352, 527
AluI AGCT 3 cut(s) 289, 352, 527
AlwNI CAGNNNCTG 1 cut(s) 355
AoxI GGCC 2 cut(s) 301, 346
ApeKI GCWGC 3 cut(s) 100, 103, 434
ApoI RAATTY 2 cut(s) 71, 89
AspLEI GCGC 1 cut(s) 544
AspS9I GGNCC 1 cut(s) 302
AsuHPI GGTGA 4 cut(s) 95, 371, 408, 447
BalI TGGCCA 1 cut(s) 348
BbvI GCAGC 3 cut(s) 112, 115, 421
BccI CCATC 3 cut(s) 255, 260, 364
BciT130I CCWGG 1 cut(s) 108
BfaI CTAG 1 cut(s) 359
BfmI CTRYAG 1 cut(s) 435
BfoI RGCGCY 1 cut(s) 545
BisI GCNGC 3 cut(s) 101, 104, 435
BlsI GCNGC 3 cut(s) 102, 105, 436
Bme1390I CCNGG 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 302
BmiI GGNNCC 2 cut(s) 304, 375
BmrFI CCNGG 1 cut(s) 108
BmrI ACTGGG 1 cut(s) 148
BmsI GCATC 1 cut(s) 458
BmuI ACTGGG 1 cut(s) 148
BplI GAGNNNNNCTC 2 cut(s) 159, 191
BpuEI CTTGAG 1 cut(s) 227
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 464
Bse1I ACTGG 1 cut(s) 143
Bse3DI GCAATG 2 cut(s) 334, 405
BseBI CCWGG 1 cut(s) 108
BseGI GGATG 2 cut(s) 247, 449
BseLI CCNNNNNNNGG 2 cut(s) 153, 464
BseMI GCAATG 2 cut(s) 334, 405
BseNI ACTGG 1 cut(s) 143
BseXI GCAGC 3 cut(s) 112, 115, 421
BshFI GGCC 2 cut(s) 303, 348
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 2 cut(s) 153, 464
BsmFI GGGAC 1 cut(s) 311
BsnI GGCC 2 cut(s) 303, 348
Bsp143I GATC 1 cut(s) 331
BspACI CCGC 1 cut(s) 123
BspANI GGCC 2 cut(s) 303, 348
BspLI GGNNCC 2 cut(s) 304, 375
BspMAI CTGCAG 1 cut(s) 439
BspQI GCTCTTC 1 cut(s) 513
BsrDI GCAATG 2 cut(s) 334, 405
BsrI ACTGG 1 cut(s) 143
BssMI GATC 1 cut(s) 331
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 2 cut(s) 31, 402
Bst6I CTCTTC 3 cut(s) 64, 269, 513
BstC8I GCNNGC 1 cut(s) 350
BstF5I GGATG 2 cut(s) 247, 449
BstH2I RGCGCY 1 cut(s) 545
BstHHI GCGC 1 cut(s) 544
BstKTI GATC 1 cut(s) 334
BstMBI GATC 1 cut(s) 331
BstMWI GCNNNNNNNGC 2 cut(s) 243, 345
BstNI CCWGG 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 106
BstSFI CTRYAG 1 cut(s) 435
BstV1I GCAGC 3 cut(s) 112, 115, 421
BsuRI GGCC 2 cut(s) 303, 348
BtgZI GCGATG 1 cut(s) 241
BtsCI GGATG 2 cut(s) 247, 449
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 2 cut(s) 232, 325
Cac8I GCNNGC 1 cut(s) 350
CaiI CAGNNNCTG 1 cut(s) 355
CfoI GCGC 1 cut(s) 544
Cfr13I GGNCC 1 cut(s) 302
Csp6I GTAC 1 cut(s) 187
CviAII CATG 2 cut(s) 13, 161
CviQI GTAC 1 cut(s) 187
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
EaeI YGGCCR 1 cut(s) 346
Eam1104I CTCTTC 3 cut(s) 64, 269, 513
EarI CTCTTC 3 cut(s) 64, 269, 513
EcoRI GAATTC 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 106
FaeI CATG 2 cut(s) 16, 164
FaiI YATR 4 cut(s) 14, 162, 281, 547
FalI AAGNNNNNCTT 2 cut(s) 511, 543
FaqI GGGAC 1 cut(s) 311
FatI CATG 2 cut(s) 12, 160
FblI GTMKAC 2 cut(s) 129, 213
Fnu4HI GCNGC 3 cut(s) 101, 104, 435
FokI GGATG 2 cut(s) 234, 436
Fsp4HI GCNGC 3 cut(s) 101, 104, 435
FspBI CTAG 1 cut(s) 359
GlaI GCGC 1 cut(s) 543
GluI GCNGC 3 cut(s) 101, 104, 435
HaeII RGCGCY 1 cut(s) 545
HaeIII GGCC 2 cut(s) 303, 348
HhaI GCGC 1 cut(s) 544
Hin1II CATG 2 cut(s) 16, 164
Hin6I GCGC 1 cut(s) 542
HinP1I GCGC 1 cut(s) 542
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 5 cut(s) 170, 197, 324, 413, 440
HphI GGTGA 4 cut(s) 95, 371, 408, 447
Hpy166II GTNNAC 3 cut(s) 55, 130, 214
Hpy188III TCNNGA 2 cut(s) 25, 206
Hpy8I GTNNAC 3 cut(s) 55, 130, 214
HpyAV CCTTC 1 cut(s) 316
HpyCH4III ACNGT 2 cut(s) 31, 402
HpyCH4V TGCA 4 cut(s) 237, 339, 437, 449
HpyF10VI GCNNNNNNNGC 2 cut(s) 243, 345
Hsp92II CATG 2 cut(s) 16, 164
HspAI GCGC 1 cut(s) 542
Kzo9I GATC 1 cut(s) 331
LguI GCTCTTC 1 cut(s) 513
LpnPI CCDG 9 cut(s) 93, 120, 124, 139, 285, 342, 362, 432, 459
Lsp1109I GCAGC 3 cut(s) 112, 115, 421
LweI GCATC 1 cut(s) 458
MaeI CTAG 1 cut(s) 359
MaeIII GTNAC 1 cut(s) 514
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MboII GAAGA 3 cut(s) 51, 286, 500
MlsI TGGCCA 1 cut(s) 348
MluCI AATT 3 cut(s) 71, 89, 384
MluNI TGGCCA 1 cut(s) 348
MlyI GAGTC 3 cut(s) 333, 407, 434
MmeI TCCRAC 2 cut(s) 145, 171
MnlI CCTC 3 cut(s) 202, 387, 463
Mox20I TGGCCA 1 cut(s) 348
MscI TGGCCA 1 cut(s) 348
Msp20I TGGCCA 1 cut(s) 348
MspA1I CMGCKG 1 cut(s) 125
MspR9I CCNGG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 108
MwoI GCNNNNNNNGC 2 cut(s) 243, 345
NdeII GATC 1 cut(s) 331
NlaIII CATG 2 cut(s) 16, 164
NlaIV GGNNCC 2 cut(s) 304, 375
NmuCI GTSAC 1 cut(s) 514
PciSI GCTCTTC 1 cut(s) 513
PfeI GAWTC 2 cut(s) 170, 197
PkrI GCNGC 3 cut(s) 102, 105, 436
PleI GAGTC 3 cut(s) 332, 407, 434
PpsI GAGTC 3 cut(s) 332, 407, 434
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 304, 375
PspPI GGNCC 1 cut(s) 302
PstI CTGCAG 1 cut(s) 439
PstNI CAGNNNCTG 1 cut(s) 355
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SalI GTCGAC 1 cut(s) 212
SapI GCTCTTC 1 cut(s) 513
SatI GCNGC 3 cut(s) 101, 104, 435
Sau3AI GATC 1 cut(s) 331
Sau96I GGNCC 1 cut(s) 302
SchI GAGTC 3 cut(s) 333, 407, 434
ScrFI CCNGG 1 cut(s) 108
SetI ASST 8 cut(s) 158, 213, 291, 299, 354, 379, 490, 529
SfaNI GCATC 1 cut(s) 458
SfcI CTRYAG 1 cut(s) 435
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 3 cut(s) 71, 89, 384
SsiI CCGC 1 cut(s) 123
SspMI CTAG 1 cut(s) 359
StyD4I CCNGG 1 cut(s) 106
TaaI ACNGT 2 cut(s) 31, 402
TaqI TCGA 2 cut(s) 213, 291
TasI AATT 3 cut(s) 71, 89, 384
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 2 cut(s) 170, 197
TscAI CASTG 2 cut(s) 239, 325
TseFI GTSAC 1 cut(s) 514
TseI GCWGC 3 cut(s) 100, 103, 434
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 4 cut(s) 102, 149, 299, 304
TspGWI ACGGA 1 cut(s) 83
TspRI CASTG 2 cut(s) 239, 325
XapI RAATTY 2 cut(s) 71, 89
XmiI GTMKAC 2 cut(s) 129, 213
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.