Rroxscaffold_3G00236870

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000173
Physical Location & Seq
Forward (+)
24328702 .. 24330105
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00236870.1

Sequence Viewer

Length: 687 bp
ATGTGGAAGCTTAAGTTTGGAGACGAGGGTGCAAATGACCCATACTTGTTCAGCACGAACAACTTCCATGGGAGGCAGACATGGGAGTTCGACCCGGATGCCGGCACACCCCAAGAGCGAGCAGAGGTCGAAGAAGCTCGGCTAAGTTTTTTCAACAATCGTCACCAGGTCCAGGCTTGTAGTGACCTCCTCTGCCGAATGCAGGTGCTGCTGGGAGAGAAAAAGTTCAAACAAACAATTCCCCAAGTAAAGGTGGCAGATGATGAGGACTGTACATATGAAAAGGCCACCGCGGCATTCAGAAGGGCAACTACCTTCTACTCTGCCTTGCAATCACCTCACGGCCATTGGCCTGCTGAAAATGCCGGTCCTATGTTTTTCATTCCCCCTTTGGTTATCTCGCTCTATATTACGGGGCATCTTAGTAAGGTGTTCTCTGCAGAGCATTATAAGGAAATGCTTAGGTATATATACTGTCATCAGAACGAGGACGGTGGGTGGGGATTACACATACAGGCCCCTAGTATGATGTTTTGTACAATTCTTAACTACATTTGCATGCGTCTACTTGGAGAAGGACCCGATGGTGGTTTAAACAACGCTTGTGCAAGAGCACGCAAGTGGATTCTTGATCATGGTGGTATAACACACTCATCATCCTGGGGAAAGACTTATATGGCAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

228

Amino Acids

25.95

Weight (kDa)

6.35

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_N PF13249 102 - 228 2.3e-16 Squalene-hopene cyclase N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 450
AarI CACCTGC 1 cut(s) 193
Acc36I ACCTGC 1 cut(s) 193
AccI GTMKAC 1 cut(s) 565
AccII CGCG 1 cut(s) 293
AciI CCGC 2 cut(s) 291, 293
AcoI YGGCCR 1 cut(s) 343
AfaI GTAC 2 cut(s) 274, 538
AfiI CCNNNNNNNGG 5 cut(s) 101, 172, 202, 250, 587
AflII CTTAAG 1 cut(s) 11
AgsI TTSAA 2 cut(s) 154, 229
AjnI CCWGG 3 cut(s) 165, 171, 659
AleI CACNNNNGTG 1 cut(s) 619
AluBI AGCT 2 cut(s) 10, 137
AluI AGCT 2 cut(s) 10, 137
Alw21I GWGCWC 1 cut(s) 616
Alw26I GTCTC 1 cut(s) 15
AlwNI CAGNNNCTG 1 cut(s) 208
AoxI GGCC 4 cut(s) 285, 343, 350, 516
ApeKI GCWGC 1 cut(s) 208
Asp700I GAANNNNTTC 2 cut(s) 62, 224
AspS9I GGNCC 4 cut(s) 169, 368, 517, 578
AsuC2I CCSGG 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 155, 327
AvaII GGWCC 3 cut(s) 169, 368, 578
BarI GAAGNNNNNNTAC 2 cut(s) 295, 327
Bbv12I GWGCWC 1 cut(s) 616
BbvI GCAGC 1 cut(s) 195
BccI CCATC 1 cut(s) 578
BceAI ACGGC 1 cut(s) 358
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 3 cut(s) 167, 173, 661
BclI TGATCA 1 cut(s) 631
BcnI CCSGG 1 cut(s) 95
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 1 cut(s) 522
BfmI CTRYAG 1 cut(s) 438
BfrI CTTAAG 1 cut(s) 11
BfuAI ACCTGC 1 cut(s) 193
BglI GCCNNNNNGGC 1 cut(s) 293
BisI GCNGC 2 cut(s) 209, 294
BlsI GCNGC 2 cut(s) 210, 295
Bme1390I CCNGG 4 cut(s) 95, 167, 173, 661
Bme18I GGWCC 3 cut(s) 169, 368, 578
BmgT120I GGNCC 4 cut(s) 169, 368, 517, 578
BmiI GGNNCC 2 cut(s) 519, 580
BmrFI CCNGG 4 cut(s) 95, 167, 173, 661
BmsI GCATC 2 cut(s) 88, 427
Bpu10I CCTNAGC 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 95
BsaJI CCNNGG 3 cut(s) 67, 291, 660
Bsc4I CCNNNNNNNGG 5 cut(s) 101, 172, 202, 250, 587
Bse118I RCCGGY 2 cut(s) 101, 365
BseBI CCWGG 3 cut(s) 167, 173, 661
BseDI CCNNGG 3 cut(s) 67, 291, 660
BseGI GGATG 2 cut(s) 103, 656
BseLI CCNNNNNNNGG 5 cut(s) 101, 172, 202, 250, 587
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 195
BseYI CCCAGC 1 cut(s) 211
Bsh1236I CGCG 1 cut(s) 293
BshFI GGCC 4 cut(s) 287, 345, 352, 518
BsiHKAI GWGCWC 1 cut(s) 616
BsiSI CCGG 3 cut(s) 95, 102, 366
BslI CCNNNNNNNGG 5 cut(s) 101, 172, 202, 250, 587
BsmAI GTCTC 1 cut(s) 15
BsmBI CGTCTC 1 cut(s) 15
BsmI GAATGC 2 cut(s) 204, 296
BsnI GGCC 4 cut(s) 287, 345, 352, 518
Bsp1286I GDGCHC 1 cut(s) 616
Bsp1407I TGTACA 2 cut(s) 272, 536
Bsp143I GATC 1 cut(s) 631
Bsp19I CCATGG 1 cut(s) 67
BspACI CCGC 2 cut(s) 291, 293
BspANI GGCC 4 cut(s) 287, 345, 352, 518
BspFNI CGCG 1 cut(s) 293
BspLI GGNNCC 2 cut(s) 519, 580
BspMAI CTGCAG 1 cut(s) 442
BspMI ACCTGC 1 cut(s) 193
BspTI CTTAAG 1 cut(s) 11
BsrFI RCCGGY 2 cut(s) 101, 365
BsrGI TGTACA 2 cut(s) 272, 536
BssAI RCCGGY 2 cut(s) 101, 365
BssECI CCNNGG 3 cut(s) 67, 291, 660
BssMI GATC 1 cut(s) 631
BssT1I CCWWGG 1 cut(s) 67
Bst2UI CCWGG 3 cut(s) 167, 173, 661
Bst4CI ACNGT 3 cut(s) 272, 476, 494
BstAFI CTTAAG 1 cut(s) 11
BstAPI GCANNNNNTGC 1 cut(s) 208
BstAUI TGTACA 2 cut(s) 272, 536
BstC8I GCNNGC 5 cut(s) 103, 120, 354, 560, 616
BstDEI CTNAG 3 cut(s) 143, 422, 461
BstDSI CCRYGG 2 cut(s) 67, 291
BstF5I GGATG 2 cut(s) 103, 656
BstFNI CGCG 1 cut(s) 293
BstKTI GATC 1 cut(s) 634
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 1 cut(s) 631
BstMWI GCNNNNNNNGC 3 cut(s) 208, 293, 362
BstNI CCWGG 3 cut(s) 167, 173, 661
BstNSI RCATGY 1 cut(s) 562
BstSCI CCNGG 4 cut(s) 93, 165, 171, 659
BstSFI CTRYAG 1 cut(s) 438
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 1 cut(s) 195
BsuRI GGCC 4 cut(s) 287, 345, 352, 518
BtgI CCRYGG 2 cut(s) 67, 291
BtsCI GGATG 2 cut(s) 103, 656
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 5 cut(s) 103, 120, 354, 560, 616
CaiI CAGNNNCTG 1 cut(s) 208
Cfr10I RCCGGY 2 cut(s) 101, 365
Cfr13I GGNCC 4 cut(s) 169, 368, 517, 578
Cfr42I CCGCGG 1 cut(s) 294
CseI GACGC 1 cut(s) 551
CsiI ACCWGGT 1 cut(s) 165
Csp6I GTAC 2 cut(s) 273, 537
CviAII CATG 4 cut(s) 68, 81, 559, 635
CviJI RGCY 8 cut(s) 10, 137, 142, 176, 287, 345, 352, 518
CviKI_1 RGCY 8 cut(s) 10, 137, 142, 176, 287, 345, 352, 518
CviQI GTAC 2 cut(s) 273, 537
DdeI CTNAG 3 cut(s) 143, 422, 461
DpnI GATC 1 cut(s) 633
DpnII GATC 1 cut(s) 631
DraI TTTAAA 1 cut(s) 594
EaeI YGGCCR 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 67
Eco47I GGWCC 3 cut(s) 169, 368, 578
EcoO109I RGGNCCY 2 cut(s) 517, 578
EcoRII CCWGG 3 cut(s) 165, 171, 659
EcoT14I CCWWGG 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 67
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 4 cut(s) 71, 84, 562, 638
FatI CATG 4 cut(s) 67, 80, 558, 634
FauNDI CATATG 1 cut(s) 277
FbaI TGATCA 1 cut(s) 631
FblI GTMKAC 1 cut(s) 565
Fnu4HI GCNGC 2 cut(s) 209, 294
FokI GGATG 2 cut(s) 110, 643
Fsp4HI GCNGC 2 cut(s) 209, 294
FspBI CTAG 1 cut(s) 522
GluI GCNGC 2 cut(s) 209, 294
GsaI CCCAGC 1 cut(s) 215
HaeIII GGCC 4 cut(s) 287, 345, 352, 518
HapII CCGG 3 cut(s) 95, 102, 366
HgaI GACGC 1 cut(s) 551
Hin1II CATG 4 cut(s) 71, 84, 562, 638
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 1 cut(s) 625
HpaII CCGG 3 cut(s) 95, 102, 366
HphI GGTGA 2 cut(s) 155, 327
Hpy166II GTNNAC 1 cut(s) 566
Hpy188I TCNGA 2 cut(s) 302, 483
Hpy188III TCNNGA 1 cut(s) 629
Hpy8I GTNNAC 1 cut(s) 566
HpyAV CCTTC 3 cut(s) 297, 325, 569
HpyCH4III ACNGT 3 cut(s) 272, 476, 494
HpyCH4V TGCA 6 cut(s) 32, 202, 331, 440, 558, 608
HpyF10VI GCNNNNNNNGC 3 cut(s) 208, 293, 362
HpyF3I CTNAG 3 cut(s) 143, 422, 461
Hsp92II CATG 4 cut(s) 71, 84, 562, 638
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 631
KspI CCGCGG 1 cut(s) 294
Kzo9I GATC 1 cut(s) 631
Lsp1109I GCAGC 1 cut(s) 195
LweI GCATC 2 cut(s) 88, 427
MabI ACCWGGT 1 cut(s) 165
MaeI CTAG 1 cut(s) 522
MaeIII GTNAC 2 cut(s) 161, 182
MalI GATC 1 cut(s) 633
MboI GATC 1 cut(s) 631
MboII GAAGA 1 cut(s) 143
MhlI GDGCHC 1 cut(s) 616
MluCI AATT 2 cut(s) 237, 540
MnlI CCTC 8 cut(s) 19, 66, 118, 197, 200, 259, 348, 481
MroNI GCCGGC 1 cut(s) 101
MroXI GAANNNNTTC 2 cut(s) 62, 224
MseI TTAA 3 cut(s) 12, 546, 593
MslI CAYNNNNRTG 2 cut(s) 557, 619
MspA1I CMGCKG 1 cut(s) 293
MspCI CTTAAG 1 cut(s) 11
MspI CCGG 3 cut(s) 95, 102, 366
MspR9I CCNGG 4 cut(s) 95, 167, 173, 661
MssI GTTTAAAC 1 cut(s) 594
Mva1269I GAATGC 2 cut(s) 204, 296
MvaI CCWGG 3 cut(s) 167, 173, 661
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 3 cut(s) 208, 293, 362
NaeI GCCGGC 1 cut(s) 103
NciI CCSGG 1 cut(s) 95
NcoI CCATGG 1 cut(s) 67
NdeI CATATG 1 cut(s) 277
NdeII GATC 1 cut(s) 631
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 4 cut(s) 71, 84, 562, 638
NlaIV GGNNCC 2 cut(s) 519, 580
NmeAIII GCCGAG 1 cut(s) 118
NmuCI GTSAC 2 cut(s) 161, 182
NspI RCATGY 1 cut(s) 562
OliI CACNNNNGTG 1 cut(s) 619
PaeI GCATGC 1 cut(s) 562
PaqCI CACCTGC 1 cut(s) 193
PctI GAATGC 2 cut(s) 204, 296
PdiI GCCGGC 1 cut(s) 103
PdmI GAANNNNTTC 2 cut(s) 62, 224
PfeI GAWTC 1 cut(s) 625
PkrI GCNGC 2 cut(s) 210, 295
PmeI GTTTAAAC 1 cut(s) 594
PpuMI RGGWCCY 1 cut(s) 578
PsiI TTATAA 1 cut(s) 450
Psp5II RGGWCCY 1 cut(s) 578
Psp6I CCWGG 3 cut(s) 165, 171, 659
PspFI CCCAGC 1 cut(s) 211
PspGI CCWGG 3 cut(s) 165, 171, 659
PspN4I GGNNCC 2 cut(s) 519, 580
PspPI GGNCC 4 cut(s) 169, 368, 517, 578
PspPPI RGGWCCY 1 cut(s) 578
PstI CTGCAG 1 cut(s) 442
PstNI CAGNNNCTG 1 cut(s) 208
RsaI GTAC 2 cut(s) 274, 538
RsaNI GTAC 2 cut(s) 273, 537
RseI CAYNNNNRTG 2 cut(s) 557, 619
SacII CCGCGG 1 cut(s) 294
SaqAI TTAA 3 cut(s) 12, 546, 593
SatI GCNGC 2 cut(s) 209, 294
Sau3AI GATC 1 cut(s) 631
Sau96I GGNCC 4 cut(s) 169, 368, 517, 578
ScrFI CCNGG 4 cut(s) 95, 167, 173, 661
SduI GDGCHC 1 cut(s) 616
SexAI ACCWGGT 1 cut(s) 165
SfaNI GCATC 2 cut(s) 88, 427
SfcI CTRYAG 1 cut(s) 438
Sfr303I CCGCGG 1 cut(s) 294
SgrBI CCGCGG 1 cut(s) 294
SinI GGWCC 3 cut(s) 169, 368, 578
SmiMI CAYNNNNRTG 2 cut(s) 557, 619
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
SphI GCATGC 1 cut(s) 562
Sse9I AATT 2 cut(s) 237, 540
SsiI CCGC 2 cut(s) 291, 293
SspMI CTAG 1 cut(s) 522
StyD4I CCNGG 4 cut(s) 93, 165, 171, 659
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 3 cut(s) 272, 476, 494
TaqI TCGA 2 cut(s) 90, 129
TasI AATT 2 cut(s) 237, 540
TatI WGTACW 2 cut(s) 272, 536
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 1 cut(s) 625
Tru1I TTAA 3 cut(s) 12, 546, 593
Tru9I TTAA 3 cut(s) 12, 546, 593
TseFI GTSAC 2 cut(s) 161, 182
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 2 cut(s) 161, 182
TspDTI ATGAA 2 cut(s) 294, 370
Vha464I CTTAAG 1 cut(s) 11
VpaK11BI GGWCC 3 cut(s) 169, 368, 578
XceI RCATGY 1 cut(s) 562
XmiI GTMKAC 1 cut(s) 565
XmnI GAANNNNTTC 2 cut(s) 62, 224
XspI CTAG 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.