Rorug07G0208900

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000173
Physical Location & Seq
Forward (+)
18380783 .. 18383696
2914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0208900.1

Sequence Viewer

Length: 1293 bp
ATGAAGAAAAGGAAGGTTGGGAGACCACGCACTATGTCTGAGTTTTTGACTTCAAGTGGATCTAATTCTTCAAACAACAATGGTTCCTCATCGCAGTCATCCTATAGGTCTACTAATCCACCTCCTACACCCCCACCACCTCCACCCCCACTGCCTCCACCCCCACCGCCTCCTTCTGCACCTTCTCCTCCAATATTACCTCTTCCATCTCTAGAAGCTGAAGCACAATCTGCTACCTTTATTACTAGAGGTCACAATAAAGGTATCCCAGAGTGGAATACTGGAGTTAAAATCAAGATTATGTTTGATTCTAACTTCCAACCTATTGGAGAAAGAGCTACACAGCTAAAGTCACAATTGGGGCAAATTGTACGCGATGGCCAGAGGATTCCACTAACATTACTTGACTGGAAGGCTGTTGGACCTGATGTGAAAGAGGGAATATGGAAAGAGGTTCAGCAAAATCTGCTTGATGTTCCAGAAGGATATAAACATGTGTGTCTTAGATGTTGCAATACACTGTGGAAGGATCACAAGAGCAAAACCAAAGTCAACTACTTTCAGAAAAACAGAGATAATCCAAATCTAAGTTCTCTAGTTCCGCCACATATTGTAGCAGAGCAGTGGAATGAGCTCATTGCTTATTGGAATAGTGAAGATGCAAAGCTGATAGCAACACGAAATTCTATCAATCGGGAGCAGCATGGACCAGTTCATAGTACTGGTCGAAAACATTTCGCCCAGCTGCGATATGAGATGGAACAAAGTGGAGAACAAACCGATAAGATGAGTGTGTGGAAAAAAGCACGCAACCAATCAAATGCAGATGTTGCCCAAGTCACTGAGGAATATGACAAGAAATTGCTAATGGAACCTGAGGACCAGCGAGAACTTAGGGCTGTAAAAGATCGAATATTCCATGAATTGCTTGGGGAAGATGGTCATGGTTATTGTCGTACCTATGGTTCTACCGTGCCTCGCAGTTTGGTGTATCCACAGGAATCAATGCCTTCTCATAACACCAATGACCTCATACAGAAAATAACTGAAGAGGTTACAGAGAAAGTGAAAGAGGCTTTCACAAGGAAGATGCAGGACCAATTAGATATGCTTCAAGCTCGGATTAACTTTTTAGAGAGCAATGATGGGCAAAACAGAAATCCATGTGGACAGGTTCAAGATGCAACCAGTGGCCATGAAGTTAGAAGGGAGTCCATAGGAGAAGGAGTTCATCCACATTCAACTAGTAATCAAGAAATTGAGCATGCTCCAGTACTCACCAAGCCCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

430

Amino Acids

48.54

Weight (kDa)

8.16

Isoelectric Point (pI)

52.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 207 - 325 1.8e-18 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 110
AccII CGCG 1 cut(s) 375
AciI CCGC 2 cut(s) 167, 602
AclWI GGATC 2 cut(s) 67, 537
AcoI YGGCCR 2 cut(s) 379, 1192
AcsI RAATTY 1 cut(s) 682
AcuI CTGAAG 2 cut(s) 240, 1068
AfaI GTAC 4 cut(s) 372, 721, 958, 1275
AflIII ACRYGT 1 cut(s) 493
AgsI TTSAA 5 cut(s) 54, 72, 1115, 1178, 1242
AhlI ACTAGT 1 cut(s) 1244
AjuI GAANNNNNNNTTGG 2 cut(s) 574, 606
AloI GAACNNNNNNTCC 2 cut(s) 1212, 1244
AluBI AGCT 7 cut(s) 218, 338, 346, 634, 667, 745, 1118
AluI AGCT 7 cut(s) 218, 338, 346, 634, 667, 745, 1118
Alw21I GWGCWC 1 cut(s) 636
Alw26I GTCTC 1 cut(s) 16
AlwI GGATC 2 cut(s) 67, 537
AoxI GGCC 2 cut(s) 379, 1192
ApeKI GCWGC 2 cut(s) 700, 745
ApoI RAATTY 1 cut(s) 682
ArsI GACNNNNNNTTYG 2 cut(s) 534, 566
Asp700I GAANNNNTTC 1 cut(s) 1227
AspS9I GGNCC 4 cut(s) 422, 707, 880, 1096
AsuHPI GGTGA 1 cut(s) 1270
AvaII GGWCC 4 cut(s) 422, 707, 880, 1096
AxyI CCTNAGG 1 cut(s) 876
BalI TGGCCA 2 cut(s) 381, 1194
BanII GRGCYC 1 cut(s) 636
Bbv12I GWGCWC 1 cut(s) 636
BbvI GCAGC 2 cut(s) 712, 732
BccI CCATC 5 cut(s) 214, 371, 751, 932, 1139
BciVI GTATCC 2 cut(s) 275, 1002
BcoDI GTCTC 1 cut(s) 16
BcuI ACTAGT 1 cut(s) 1244
BfaI CTAG 5 cut(s) 212, 246, 596, 1245, 1291
BfmI CTRYAG 1 cut(s) 103
BfuI GTATCC 2 cut(s) 275, 1002
BisI GCNGC 2 cut(s) 701, 746
BlsI GCNGC 2 cut(s) 702, 747
BmcAI AGTACT 2 cut(s) 721, 1275
Bme18I GGWCC 4 cut(s) 422, 707, 880, 1096
BmgT120I GGNCC 4 cut(s) 422, 707, 880, 1096
BmiI GGNNCC 2 cut(s) 85, 873
BmsI GCATC 3 cut(s) 649, 1080, 1171
BpmI CTGGAG 2 cut(s) 303, 1254
BsaI GGTCTC 1 cut(s) 16
BsaXI ACNNNNNCTCC 2 cut(s) 1212, 1242
Bse1I ACTGG 6 cut(s) 286, 413, 710, 727, 1188, 1271
Bse21I CCTNAGG 1 cut(s) 876
Bse3DI GCAATG 2 cut(s) 636, 1147
BseGI GGATG 2 cut(s) 98, 1231
BseMI GCAATG 2 cut(s) 636, 1147
BseMII CTCAG 3 cut(s) 30, 834, 867
BseNI ACTGG 6 cut(s) 286, 413, 710, 727, 1188, 1271
BseRI GAGGAG 1 cut(s) 177
BseXI GCAGC 2 cut(s) 712, 732
BseYI CCCAGC 1 cut(s) 741
BsgI GTGCAG 1 cut(s) 162
Bsh1236I CGCG 1 cut(s) 375
BshFI GGCC 2 cut(s) 381, 1194
BsiHKAI GWGCWC 1 cut(s) 636
BsmAI GTCTC 1 cut(s) 16
BsnI GGCC 2 cut(s) 381, 1194
Bso31I GGTCTC 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 636
Bsp143I GATC 3 cut(s) 59, 529, 907
BspACI CCGC 2 cut(s) 167, 602
BspANI GGCC 2 cut(s) 381, 1194
BspCNI CTCAG 3 cut(s) 31, 835, 868
BspFNI CGCG 1 cut(s) 375
BspLI GGNNCC 2 cut(s) 85, 873
BspPI GGATC 2 cut(s) 67, 537
BspTNI GGTCTC 1 cut(s) 16
BsrDI GCAATG 2 cut(s) 636, 1147
BsrI ACTGG 6 cut(s) 286, 413, 710, 727, 1188, 1271
BssMI GATC 3 cut(s) 59, 529, 907
Bst4CI ACNGT 2 cut(s) 522, 973
Bst6I CTCTTC 2 cut(s) 207, 1044
BstAPI GCANNNNNTGC 3 cut(s) 230, 466, 830
BstC8I GCNNGC 2 cut(s) 808, 1266
BstDEI CTNAG 6 cut(s) 39, 503, 587, 843, 876, 893
BstF5I GGATG 2 cut(s) 98, 1231
BstFNI CGCG 1 cut(s) 375
BstKTI GATC 3 cut(s) 62, 532, 910
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 3 cut(s) 59, 529, 907
BstMWI GCNNNNNNNGC 3 cut(s) 230, 466, 830
BstNSI RCATGY 2 cut(s) 497, 1268
BstSFI CTRYAG 1 cut(s) 103
BstUI CGCG 1 cut(s) 375
BstV1I GCAGC 2 cut(s) 712, 732
BstX2I RGATCY 1 cut(s) 59
BstXI CCANNNNNNTGG 1 cut(s) 326
BstYI RGATCY 1 cut(s) 59
Bsu36I CCTNAGG 1 cut(s) 876
BsuI GTATCC 2 cut(s) 275, 1002
BsuRI GGCC 2 cut(s) 381, 1194
BtgZI GCGATG 2 cut(s) 75, 390
BtsCI GGATG 2 cut(s) 98, 1231
BtsI GCAGTG 2 cut(s) 149, 629
BtsIMutI CAGTG 5 cut(s) 149, 518, 629, 840, 1195
Cac8I GCNNGC 2 cut(s) 808, 1266
Cfr13I GGNCC 4 cut(s) 422, 707, 880, 1096
Csp6I GTAC 4 cut(s) 371, 720, 957, 1274
CviAII CATG 7 cut(s) 494, 704, 920, 944, 1164, 1196, 1265
CviQI GTAC 4 cut(s) 371, 720, 957, 1274
DdeI CTNAG 6 cut(s) 39, 503, 587, 843, 876, 893
DpnI GATC 3 cut(s) 61, 531, 909
DpnII GATC 3 cut(s) 59, 529, 907
EaeI YGGCCR 2 cut(s) 379, 1192
Eam1104I CTCTTC 2 cut(s) 207, 1044
EarI CTCTTC 2 cut(s) 207, 1044
EciI GGCGGA 1 cut(s) 591
Ecl136II GAGCTC 1 cut(s) 634
Eco24I GRGCYC 1 cut(s) 636
Eco31I GGTCTC 1 cut(s) 16
Eco47I GGWCC 4 cut(s) 422, 707, 880, 1096
Eco53kI GAGCTC 1 cut(s) 634
Eco57I CTGAAG 2 cut(s) 240, 1068
Eco81I CCTNAGG 1 cut(s) 876
EcoICRI GAGCTC 1 cut(s) 634
EcoT38I GRGCYC 1 cut(s) 636
FaeI CATG 7 cut(s) 497, 707, 923, 947, 1167, 1199, 1268
FatI CATG 7 cut(s) 493, 703, 919, 943, 1163, 1195, 1264
FblI GTMKAC 1 cut(s) 110
Fnu4HI GCNGC 2 cut(s) 701, 746
FokI GGATG 2 cut(s) 85, 1218
FriOI GRGCYC 1 cut(s) 636
Fsp4HI GCNGC 2 cut(s) 701, 746
FspBI CTAG 5 cut(s) 212, 246, 596, 1245, 1291
GluI GCNGC 2 cut(s) 701, 746
GsaI CCCAGC 1 cut(s) 745
GsuI CTGGAG 2 cut(s) 303, 1254
HaeIII GGCC 2 cut(s) 381, 1194
Hin1II CATG 7 cut(s) 497, 707, 923, 947, 1167, 1199, 1268
HincII GTYRAC 1 cut(s) 553
HindII GTYRAC 1 cut(s) 553
HinfI GANTC 4 cut(s) 308, 388, 1001, 1211
HphI GGTGA 1 cut(s) 1270
Hpy166II GTNNAC 3 cut(s) 111, 553, 1169
Hpy188I TCNGA 3 cut(s) 40, 564, 1122
Hpy188III TCNNGA 6 cut(s) 212, 295, 479, 695, 1178, 1253
Hpy8I GTNNAC 3 cut(s) 111, 553, 1169
HpyAV CCTTC 9 cut(s) 7, 183, 192, 406, 476, 520, 1020, 1200, 1217
HpyCH4III ACNGT 2 cut(s) 522, 973
HpyCH4V TGCA 6 cut(s) 179, 513, 662, 824, 1093, 1184
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 466, 830
HpyF3I CTNAG 6 cut(s) 39, 503, 587, 843, 876, 893
Hsp92II CATG 7 cut(s) 497, 707, 923, 947, 1167, 1199, 1268
Kzo9I GATC 3 cut(s) 59, 529, 907
LmnI GCTCC 2 cut(s) 697, 1273
Lsp1109I GCAGC 2 cut(s) 712, 732
LweI GCATC 3 cut(s) 649, 1080, 1171
MaeI CTAG 5 cut(s) 212, 246, 596, 1245, 1291
MaeIII GTNAC 4 cut(s) 251, 351, 838, 1054
MalI GATC 3 cut(s) 61, 531, 909
MboI GATC 3 cut(s) 59, 529, 907
MboII GAAGA 7 cut(s) 16, 60, 194, 668, 947, 1061, 1099
MfeI CAATTG 1 cut(s) 356
MflI RGATCY 1 cut(s) 59
MhlI GDGCHC 1 cut(s) 636
MlsI TGGCCA 2 cut(s) 381, 1194
MluCI AATT 8 cut(s) 64, 356, 366, 682, 860, 923, 1100, 1257
MluNI TGGCCA 2 cut(s) 381, 1194
MlyI GAGTC 1 cut(s) 1220
MmeI TCCRAC 2 cut(s) 343, 400
Mox20I TGGCCA 2 cut(s) 381, 1194
MroXI GAANNNNTTC 1 cut(s) 1227
MscI TGGCCA 2 cut(s) 381, 1194
MseI TTAA 2 cut(s) 288, 1125
Msp20I TGGCCA 2 cut(s) 381, 1194
MspA1I CMGCKG 1 cut(s) 745
MunI CAATTG 1 cut(s) 356
MvnI CGCG 1 cut(s) 375
MwoI GCNNNNNNNGC 3 cut(s) 230, 466, 830
NdeII GATC 3 cut(s) 59, 529, 907
NlaIII CATG 7 cut(s) 497, 707, 923, 947, 1167, 1199, 1268
NlaIV GGNNCC 2 cut(s) 85, 873
NmuCI GTSAC 3 cut(s) 251, 351, 838
NspI RCATGY 2 cut(s) 497, 1268
PaeI GCATGC 1 cut(s) 1268
PciI ACATGT 1 cut(s) 493
PdmI GAANNNNTTC 1 cut(s) 1227
PfeI GAWTC 3 cut(s) 308, 388, 1001
PkrI GCNGC 2 cut(s) 702, 747
PleI GAGTC 1 cut(s) 1219
PpsI GAGTC 1 cut(s) 1219
PscI ACATGT 1 cut(s) 493
Psp124BI GAGCTC 1 cut(s) 636
PspFI CCCAGC 1 cut(s) 741
PspN4I GGNNCC 2 cut(s) 85, 873
PspPI GGNCC 4 cut(s) 422, 707, 880, 1096
PsrI GAACNNNNNNTAC 2 cut(s) 949, 981
PsuI RGATCY 1 cut(s) 59
PvuII CAGCTG 1 cut(s) 745
RsaI GTAC 4 cut(s) 372, 721, 958, 1275
RsaNI GTAC 4 cut(s) 371, 720, 957, 1274
SacI GAGCTC 1 cut(s) 636
SaqAI TTAA 2 cut(s) 288, 1125
SatI GCNGC 2 cut(s) 701, 746
Sau3AI GATC 3 cut(s) 59, 529, 907
Sau96I GGNCC 4 cut(s) 422, 707, 880, 1096
ScaI AGTACT 2 cut(s) 721, 1275
SchI GAGTC 1 cut(s) 1220
SduI GDGCHC 1 cut(s) 636
SfaNI GCATC 3 cut(s) 649, 1080, 1171
SfcI CTRYAG 1 cut(s) 103
SinI GGWCC 4 cut(s) 422, 707, 880, 1096
SpeI ACTAGT 1 cut(s) 1244
SphI GCATGC 1 cut(s) 1268
Sse9I AATT 8 cut(s) 64, 356, 366, 682, 860, 923, 1100, 1257
SsiI CCGC 2 cut(s) 167, 602
SspI AATATT 2 cut(s) 195, 915
SspMI CTAG 5 cut(s) 212, 246, 596, 1245, 1291
SstI GAGCTC 1 cut(s) 636
TaaI ACNGT 2 cut(s) 522, 973
TaqI TCGA 2 cut(s) 727, 910
TasI AATT 8 cut(s) 64, 356, 366, 682, 860, 923, 1100, 1257
TatI WGTACW 2 cut(s) 719, 1273
TfiI GAWTC 3 cut(s) 308, 388, 1001
Tru1I TTAA 2 cut(s) 288, 1125
Tru9I TTAA 2 cut(s) 288, 1125
TscAI CASTG 5 cut(s) 156, 525, 629, 847, 1195
TseFI GTSAC 3 cut(s) 251, 351, 838
TseI GCWGC 2 cut(s) 700, 745
Tsp45I GTSAC 3 cut(s) 251, 351, 838
TspDTI ATGAA 5 cut(s) 17, 704, 936, 1212, 1220
TspRI CASTG 5 cut(s) 156, 525, 629, 847, 1195
VpaK11BI GGWCC 4 cut(s) 422, 707, 880, 1096
XapI RAATTY 1 cut(s) 682
XbaI TCTAGA 1 cut(s) 211
XceI RCATGY 2 cut(s) 497, 1268
XcmI CCANNNNNNNNNTGG 1 cut(s) 926
XmiI GTMKAC 1 cut(s) 110
XmnI GAANNNNTTC 1 cut(s) 1227
XspI CTAG 5 cut(s) 212, 246, 596, 1245, 1291
ZrmI AGTACT 2 cut(s) 721, 1275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.