Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000173

Physical Location & Seq

Genomic Coordinates Reverse (-)

6423313 .. 6424480

Gene Structure 1168 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g08310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTGGAGGCTGAAAATTGGGGAGGGTGTAAATGACCCATTTTTGTTCAGCACAAACAACTTCACGGGGAGGCAGACATGGGAGTTTGACCCCCAAGCAGGTACTCCTCAAGAGCGTGCTGAGATTGAAGAGGCTCGTCAAAATTACCACCAAAACCGATTCCAGGTCAAACCTAGCAGTGACTTACTATGGAGAATGCAGTGTTTAAGAGAGAAAATTTTCAAGCAAACGATTCCTCCATTGAAGATCCAGGAAGGTGAGGAAATCACACATGAAACTGCGACAGCGGCATTGAAGAGGGCTGTCCGTTTCACTGCAGCCTTGCAATCAAGCCACGGACATTGGCCTGCTGAATTTTCTGGCCCATTGTTTTACACACCTCCTCTGGTCATGTGTCTGTACATCACTGGACATCTTAATGTTGTCTTATCTGCAGAACATCGAAAAGAAGTTAAGCGTTGCATATACAATCATCAGAACAAAGATGGTGGATGGGGATTAGCCGTGGGGAGCCATAGCAGCATGTTCGGTACGGCTTTCAACTATGTGTGTTTGCGTTTGCTTGGAGAAGGACCAGATGCAGGTGAAGACAATGGCATGGCTAGAGGAAGAAAGTGGATTCTTGACCATGGCGGTGTAACCAATATACTTTCTTGGGGAAAGATTTGGCTTTCGGTAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009506 GO:0009987 GO:0010263 GO:0010683 GO:0010685 GO:0010686 GO:0012505 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0022622 GO:0030054 GO:0031559 GO:0032501 GO:0032502 GO:0034074 GO:0034075 GO:0042299 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0051746 GO:0055044 GO:0071704 GO:0080003 GO:0080011 GO:0099402 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

228

Amino Acids

25.77

Weight (kDa)

8.35

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQHop_cyclase_N	PF13249	99 - 226	1.3e-19	Squalene-hopene cyclase N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca	FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica	MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica	Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis	pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis	RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata	RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora	Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii	Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa	Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha	Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana	Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	572
Acc36I	ACCTGC	2 cut(s)	89, 572
AciI	CCGC	2 cut(s)	287, 633
AclWI	GGATC	1 cut(s)	241
AcsI	RAATTY	2 cut(s)	216, 353
AfaI	GTAC	3 cut(s)	103, 401, 532
AfiI	CCNNNNNNNGG	3 cut(s)	98, 163, 581
AgsI	TTSAA	5 cut(s)	128, 223, 244, 295, 541
AjnI	CCWGG	2 cut(s)	162, 249
AlwI	GGATC	1 cut(s)	241
AoxI	GGCC	2 cut(s)	344, 361
ApeKI	GCWGC	2 cut(s)	317, 519
ApoI	RAATTY	2 cut(s)	216, 353
Asp700I	GAANNNNTTC	1 cut(s)	218
AspS9I	GGNCC	2 cut(s)	362, 572
AsuHPI	GGTGA	2 cut(s)	269, 596
AvaII	GGWCC	1 cut(s)	572
BbsI	GAAGAC	1 cut(s)	594
BbvI	GCAGC	2 cut(s)	329, 531
BccI	CCATC	2 cut(s)	479, 486
BceAI	ACGGC	2 cut(s)	488, 549
BcgI	CGANNNNNNTGC	2 cut(s)	508, 542
BciT130I	CCWGG	2 cut(s)	164, 251
BfaI	CTAG	2 cut(s)	174, 603
BfmI	CTRYAG	2 cut(s)	315, 432
BfuAI	ACCTGC	2 cut(s)	89, 572
BisI	GCNGC	3 cut(s)	288, 318, 520
BlsI	GCNGC	3 cut(s)	289, 319, 521
Bme1390I	CCNGG	2 cut(s)	164, 251
Bme18I	GGWCC	1 cut(s)	572
BmgT120I	GGNCC	2 cut(s)	362, 572
BmiI	GGNNCC	1 cut(s)	512
BmrFI	CCNGG	2 cut(s)	164, 251
BmsI	GCATC	1 cut(s)	568
BpiI	GAAGAC	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	93
BsaJI	CCNNGG	3 cut(s)	334, 504, 628
BsaXI	ACNNNNNCTCC	2 cut(s)	220, 250
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 163, 581
Bse1I	ACTGG	1 cut(s)	412
BseBI	CCWGG	2 cut(s)	164, 251
BseDI	CCNNGG	3 cut(s)	334, 504, 628
BseGI	GGATG	1 cut(s)	497
BseLI	CCNNNNNNNGG	3 cut(s)	98, 163, 581
BseMII	CTCAG	1 cut(s)	111
BseNI	ACTGG	1 cut(s)	412
BseRI	GAGGAG	2 cut(s)	96, 372
BseXI	GCAGC	2 cut(s)	329, 531
BshFI	GGCC	2 cut(s)	346, 363
BslI	CCNNNNNNNGG	3 cut(s)	98, 163, 581
BsmI	GAATGC	1 cut(s)	201
BsnI	GGCC	2 cut(s)	346, 363
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	1 cut(s)	246
Bsp19I	CCATGG	1 cut(s)	628
BspACI	CCGC	2 cut(s)	287, 633
BspANI	GGCC	2 cut(s)	346, 363
BspCNI	CTCAG	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	512
BspMAI	CTGCAG	2 cut(s)	319, 436
BspMI	ACCTGC	2 cut(s)	89, 572
BspPI	GGATC	1 cut(s)	241
BsrGI	TGTACA	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	412
BssECI	CCNNGG	3 cut(s)	334, 504, 628
BssMI	GATC	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	628
Bst2UI	CCWGG	2 cut(s)	164, 251
Bst6I	CTCTTC	2 cut(s)	123, 290
BstAUI	TGTACA	1 cut(s)	399
BstC8I	GCNNGC	2 cut(s)	117, 348
BstDEI	CTNAG	1 cut(s)	120
BstDSI	CCRYGG	3 cut(s)	334, 504, 628
BstF5I	GGATG	1 cut(s)	497
BstKTI	GATC	1 cut(s)	249
BstMBI	GATC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 519
BstNI	CCWGG	2 cut(s)	164, 251
BstNSI	RCATGY	1 cut(s)	526
BstSCI	CCNGG	2 cut(s)	162, 249
BstSFI	CTRYAG	2 cut(s)	315, 432
BstV1I	GCAGC	2 cut(s)	329, 531
BstV2I	GAAGAC	1 cut(s)	594
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	346, 363
BtgI	CCRYGG	3 cut(s)	334, 504, 628
BtsCI	GGATG	1 cut(s)	497
BtsI	GCAGTG	3 cut(s)	184, 206, 312
BtsIMutI	CAGTG	4 cut(s)	184, 206, 312, 405
BveI	ACCTGC	2 cut(s)	89, 572
Cac8I	GCNNGC	2 cut(s)	117, 348
Cfr13I	GGNCC	2 cut(s)	362, 572
Csp6I	GTAC	3 cut(s)	102, 400, 531
CspCI	CAANNNNNGTGG	4 cut(s)	323, 358, 469, 504
CviAII	CATG	6 cut(s)	78, 272, 391, 523, 598, 629
CviQI	GTAC	3 cut(s)	102, 400, 531
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
Eam1104I	CTCTTC	2 cut(s)	123, 290
EarI	CTCTTC	2 cut(s)	123, 290
Eco130I	CCWWGG	1 cut(s)	628
Eco47I	GGWCC	1 cut(s)	572
EcoRII	CCWGG	2 cut(s)	162, 249
EcoT14I	CCWWGG	1 cut(s)	628
ErhI	CCWWGG	1 cut(s)	628
FaeI	CATG	6 cut(s)	81, 275, 394, 526, 601, 632
FatI	CATG	6 cut(s)	77, 271, 390, 522, 597, 628
Fnu4HI	GCNGC	3 cut(s)	288, 318, 520
FokI	GGATG	1 cut(s)	504
Fsp4HI	GCNGC	3 cut(s)	288, 318, 520
FspBI	CTAG	2 cut(s)	174, 603
GluI	GCNGC	3 cut(s)	288, 318, 520
HaeIII	GGCC	2 cut(s)	346, 363
Hin1II	CATG	6 cut(s)	81, 275, 394, 526, 601, 632
HinfI	GANTC	3 cut(s)	159, 232, 619
HphI	GGTGA	2 cut(s)	269, 596
Hpy188I	TCNGA	1 cut(s)	477
Hpy188III	TCNNGA	2 cut(s)	110, 623
HpyAV	CCTTC	2 cut(s)	248, 563
HpyCH4V	TGCA	6 cut(s)	199, 317, 325, 434, 462, 581
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 519
HpyF3I	CTNAG	1 cut(s)	120
Hsp92II	CATG	6 cut(s)	81, 275, 394, 526, 601, 632
Kzo9I	GATC	1 cut(s)	246
LmnI	GCTCC	1 cut(s)	510
Lsp1109I	GCAGC	2 cut(s)	329, 531
LweI	GCATC	1 cut(s)	568
MaeI	CTAG	2 cut(s)	174, 603
MaeIII	GTNAC	2 cut(s)	179, 637
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	5 cut(s)	140, 256, 307, 599, 621
MflI	RGATCY	1 cut(s)	246
MluCI	AATT	4 cut(s)	15, 142, 216, 353
MroXI	GAANNNNTTC	1 cut(s)	218
MseI	TTAA	3 cut(s)	206, 417, 453
MslI	CAYNNNNRTG	2 cut(s)	417, 633
MspA1I	CMGCKG	1 cut(s)	287
MspR9I	CCNGG	2 cut(s)	164, 251
Mva1269I	GAATGC	1 cut(s)	201
MvaI	CCWGG	2 cut(s)	164, 251
MwoI	GCNNNNNNNGC	2 cut(s)	287, 519
NcoI	CCATGG	1 cut(s)	628
NdeII	GATC	1 cut(s)	246
NlaIII	CATG	6 cut(s)	81, 275, 394, 526, 601, 632
NlaIV	GGNNCC	1 cut(s)	512
NmuCI	GTSAC	1 cut(s)	179
NspI	RCATGY	1 cut(s)	526
PaqCI	CACCTGC	1 cut(s)	572
PctI	GAATGC	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	218
PfeI	GAWTC	3 cut(s)	159, 232, 619
PfoI	TCCNGGA	1 cut(s)	249
PkrI	GCNGC	3 cut(s)	289, 319, 521
Psp6I	CCWGG	2 cut(s)	162, 249
PspGI	CCWGG	2 cut(s)	162, 249
PspN4I	GGNNCC	1 cut(s)	512
PspPI	GGNCC	2 cut(s)	362, 572
PstI	CTGCAG	2 cut(s)	319, 436
PsuI	RGATCY	1 cut(s)	246
RsaI	GTAC	3 cut(s)	103, 401, 532
RsaNI	GTAC	3 cut(s)	102, 400, 531
RseI	CAYNNNNRTG	2 cut(s)	417, 633
SaqAI	TTAA	3 cut(s)	206, 417, 453
SatI	GCNGC	3 cut(s)	288, 318, 520
Sau3AI	GATC	1 cut(s)	246
Sau96I	GGNCC	2 cut(s)	362, 572
ScrFI	CCNGG	2 cut(s)	164, 251
SetI	ASST	6 cut(s)	103, 168, 175, 259, 382, 586
SfaNI	GCATC	1 cut(s)	568
SfcI	CTRYAG	2 cut(s)	315, 432
SinI	GGWCC	1 cut(s)	572
SmiMI	CAYNNNNRTG	2 cut(s)	417, 633
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
Sse9I	AATT	4 cut(s)	15, 142, 216, 353
SsiI	CCGC	2 cut(s)	287, 633
SspMI	CTAG	2 cut(s)	174, 603
StyD4I	CCNGG	2 cut(s)	162, 249
StyI	CCWWGG	1 cut(s)	628
TaqI	TCGA	1 cut(s)	442
TasI	AATT	4 cut(s)	15, 142, 216, 353
TatI	WGTACW	1 cut(s)	399
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	3 cut(s)	159, 232, 619
Tru1I	TTAA	3 cut(s)	206, 417, 453
Tru9I	TTAA	3 cut(s)	206, 417, 453
TscAI	CASTG	4 cut(s)	184, 206, 319, 412
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	2 cut(s)	317, 519
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	1 cut(s)	288
TspGWI	ACGGA	2 cut(s)	296, 351
TspRI	CASTG	4 cut(s)	184, 206, 319, 412
VpaK11BI	GGWCC	1 cut(s)	572
XapI	RAATTY	2 cut(s)	216, 353
XceI	RCATGY	1 cut(s)	526
XmnI	GAANNNNTTC	1 cut(s)	218
XspI	CTAG	2 cut(s)	174, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.