Rroxscaffold_2G00098570

Belongs to the terpene cyclase mutase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
19888446 .. 19895906
7461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00098570.1

Sequence Viewer

Length: 2031 bp
ATGTGGAAGCTTAAGGTTGCAGAAGGTGGGGAAGATTCCTCGGCTTACATTTACAGCACAAACAACTTTGTGGGAAGGCAGACATGGGAGTTTGATCCCGAAGCAGGAACTGCTGAAGAGCGAGCTGAAGTTGAAGCGGCTCGTCTTCATTTCTACAACAACCGTTATCAGGTTAAGCCCAGTGGCGACCTTCTTTGGCGGATGCAGTTCCTGAGAGAGAAAAAGCTCATACAGACAATTCCTCCGGTAAAAGTTGAAGATGGCGAGGTTATAACCTATGAAAAAACCACAGATGCACTGAGAAGGTCTGTCCACTTCTTCTCAGCATTGCAGGCAAGCGATGGCCATTGGCCTGCGGAAAATGCTGGTCCTTTGTTTTTCCTTCCTCCTTTGGTCATAGGTATGTATATTACGGGACATCTTAACAGTGTATTCCCCGAGGAGCATCGGAAAGAAATTCTGCGTTACCTATACTATCATCAGATACTTGGTTTGTTTGATTGGTCTGGAAGCAACCCTATGCCCCCAGAGTTTTGGATTCTTCCTTCATTTCTTCCTATGCATCCAGCAAAAATGTGGTGCTATTGTAGGATGGTTTACATGCCAATGTCATACTTGTATGGAAAAAGGTTTGTTGGCCCAATTACACCTCTCGTTCTTCAATTGAGGGAAGAACTTTTTATTCAACCTTACAATGAAATCAATTGGAAGAAAGTACGCCATCTATGTGCCAAAGAGGATATCTACTACCCTCATCCTTTGATACAGGATCTCCTTTGGGATAGCTTGTACATTTCCACAGAGCCTCTTCTTACTCGTTGGCCCTTGAACAAGTTGATCAGAAAAAACGCTCTTCAAGTGACCATGAAGCATATTCATTACGAAGATGAGAACAGCCGATACATTACCATAGGATGTGTGGAAAAGGTTTTATGTATGCTTGCTTGTTGGGTTGAAGATCCAAATGGAGACTATTTCAAGAAGCATCTTGCAAGGATCCCAGATTATTTATGGGTTGCTGAAGATGGAATGAAGATGCAAAGTTTTGGTAGTCAGCAGTGGGATACTGGTTTTGCCATTCAAGCTTTGCTTGCTAGTAATCTCACAGATGAAATTGGGCCAACGCTCGCTAGAGGACATGACTTCATAAAGAAATCTCAGGTCAAGGACAACCCATCTGGTGACTTCAAAAGCATGCACCGCCACATTTCTAAAGGATCATGGACTTTCTCTGATCAAGATCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTAAAGTGTTGCCTTATGTTGTCGATGATGCCACCGGAGATAGTTGGAGAAAAAATGGAACCTGAGCGGTTGTATGATTCTGTCAATGTTCTACTTTCCCTACAGAGCAAGAATGGTGGTTTATCAGCCTGGGAACCAGCAGGGGCAGCAGAGTGGTTAGAACTGTTAAATCCGACAGAATTCTTCGCGGACATTGTGATTGAGCATGAATATGTTGAGTGCACTTCATCTGCAATTCAGGCTTTAGTTCTGTTTAAAAAGCTACACCCTGGACACAGGAAGAAAGAGATCGAACATTCCATCACCAATGCGGTACACTACCTTGAAAATATACAAATGCCGGATGGTTCATGGTATGGAAACTGGGGAGTTTGCTTCACATATGGTACCTGGTTTGCAGTAGGAGGATTGGGAGCAGCTGGCAAAACTTTCAGCACTTGCGCAGCCATGCGCAAAGCGAAATACATTCCTCTAGAAGGAAACCGGTCCAATTTAGTACATACTGCTTGGGCTATGATGGGTCTCATTCATGCGGGACAGGCAGAAAGAGACCCAACACCTCTTCATCGTGCAGCAAAGTTTATAATCAATTCTCAACTGGCATGGAAAATGGAAATCACTGGAGTCTTCATGAAGAACTGCATGCTACATTATGCAGCTTATAGAAATATATACCCATTCTGGGCTCTTGCAGAATACCGCAAGCGGGTTCCATTGCCTTCCCAGGCCAGAATTGTTCACCCTATTATGTAG

Protein Analysis

676

Amino Acids

77.86

Weight (kDa)

6.61

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_N PF13249 162 - 238 1.4e-10 Squalene-hopene cyclase N-terminal domain
SQHop_cyclase_C PF13243 353 - 579 2e-25 Squalene-hopene cyclase C-terminal domain
SQHop_cyclase_C PF13243 588 - 661 7.2e-08 Squalene-hopene cyclase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 272, 1862
Acc16I TGCGCA 2 cut(s) 1720, 1730
Acc65I GGTACC 1 cut(s) 1664
AccB1I GGYRCC 1 cut(s) 1664
AccBSI CCGCTC 1 cut(s) 1345
AccII CGCG 1 cut(s) 1466
AclWI GGATC 6 cut(s) 89, 777, 953, 991, 1004, 1225
AcoI YGGCCR 1 cut(s) 343
AcsI RAATTY 2 cut(s) 456, 1457
AcuI CTGAAG 3 cut(s) 135, 147, 1041
AfaI GTAC 5 cut(s) 717, 791, 1593, 1666, 1776
AfiI CCNNNNNNNGG 5 cut(s) 104, 169, 1754, 1960, 1984
AflII CTTAAG 1 cut(s) 11
AgeI ACCGGT 1 cut(s) 1761
AjnI CCWGG 4 cut(s) 1406, 1546, 1667, 2001
AluBI AGCT 8 cut(s) 10, 125, 226, 786, 1085, 1540, 1697, 1937
AluI AGCT 8 cut(s) 10, 125, 226, 786, 1085, 1540, 1697, 1937
Alw21I GWGCWC 1 cut(s) 1502
Alw26I GTCTC 3 cut(s) 963, 1805, 1821
Alw44I GTGCAC 1 cut(s) 1498
AlwI GGATC 6 cut(s) 89, 777, 953, 991, 1004, 1225
AlwNI CAGNNNCTG 2 cut(s) 110, 211
Ama87I CYCGRG 1 cut(s) 437
AoxI GGCC 6 cut(s) 343, 350, 637, 821, 1118, 2004
ApaLI GTGCAC 1 cut(s) 1498
ApeKI GCWGC 5 cut(s) 1424, 1694, 1721, 1850, 1934
ApoI RAATTY 2 cut(s) 456, 1457
AsiGI ACCGGT 1 cut(s) 1761
Asp718I GGTACC 1 cut(s) 1664
AspLEI GCGC 2 cut(s) 1721, 1731
AspS9I GGNCC 5 cut(s) 368, 638, 822, 1118, 1764
AsuHPI GGTGA 3 cut(s) 1193, 1573, 2009
AvaI CYCGRG 1 cut(s) 437
AvaII GGWCC 2 cut(s) 368, 1764
BaeGI GKGCMC 1 cut(s) 1502
BalI TGGCCA 1 cut(s) 345
BamHI GGATCC 1 cut(s) 996
BanI GGYRCC 1 cut(s) 1664
BanII GRGCYC 1 cut(s) 1966
BbsI GAAGAC 2 cut(s) 137, 1897
Bbv12I GWGCWC 1 cut(s) 1502
BbvI GCAGC 5 cut(s) 1436, 1706, 1733, 1862, 1946
BciT130I CCWGG 4 cut(s) 1408, 1548, 1669, 2003
BciVI GTATCC 1 cut(s) 1057
BclI TGATCA 2 cut(s) 837, 1234
BcoDI GTCTC 3 cut(s) 963, 1805, 1821
BfaI CTAG 3 cut(s) 1095, 1131, 1751
BfmI CTRYAG 2 cut(s) 1269, 1379
BfrI CTTAAG 1 cut(s) 11
BfuI GTATCC 1 cut(s) 1057
BisI GCNGC 6 cut(s) 138, 1425, 1695, 1722, 1851, 1935
BlsI GCNGC 6 cut(s) 139, 1426, 1696, 1723, 1852, 1936
Bme1390I CCNGG 4 cut(s) 1408, 1548, 1669, 2003
Bme18I GGWCC 2 cut(s) 368, 1764
BmeT110I CYCGRG 1 cut(s) 437
BmgT120I GGNCC 5 cut(s) 368, 638, 822, 1118, 1764
BmiI GGNNCC 5 cut(s) 998, 1338, 1413, 1666, 1989
BmrFI CCNGG 4 cut(s) 1408, 1548, 1669, 2003
BmrI ACTGGG 2 cut(s) 174, 1651
BmsI GCATC 7 cut(s) 192, 283, 454, 571, 994, 1026, 1296
BmuI ACTGGG 2 cut(s) 174, 1651
BpiI GAAGAC 2 cut(s) 137, 1897
BpmI CTGGAG 1 cut(s) 1920
Bpu10I CCTNAGC 1 cut(s) 1341
BsaBI GATNNNNATC 1 cut(s) 1239
BsaI GGTCTC 2 cut(s) 1805, 1821
BsaJI CCNNGG 5 cut(s) 39, 438, 1407, 1546, 2001
BsaWI WCCGGW 3 cut(s) 244, 1312, 1761
BsaXI ACNNNNNCTCC 4 cut(s) 226, 256, 756, 786
Bsc4I CCNNNNNNNGG 5 cut(s) 104, 169, 1754, 1960, 1984
Bse118I RCCGGY 1 cut(s) 1761
Bse1I ACTGG 5 cut(s) 180, 1072, 1646, 1881, 1903
Bse3DI GCAATG 2 cut(s) 326, 1991
Bse8I GATNNNNATC 1 cut(s) 1239
BseBI CCWGG 4 cut(s) 1408, 1548, 1669, 2003
BseDI CCNNGG 5 cut(s) 39, 438, 1407, 1546, 2001
BseGI GGATG 7 cut(s) 207, 562, 597, 754, 920, 1253, 1627
BseJI GATNNNNATC 1 cut(s) 1239
BseLI CCNNNNNNNGG 5 cut(s) 104, 169, 1754, 1960, 1984
BseMI GCAATG 2 cut(s) 326, 1991
BseMII CTCAG 5 cut(s) 203, 290, 336, 1172, 1332
BseNI ACTGG 5 cut(s) 180, 1072, 1646, 1881, 1903
BseRI GAGGAG 1 cut(s) 455
BseSI GKGCMC 1 cut(s) 1502
BseXI GCAGC 5 cut(s) 1436, 1706, 1733, 1862, 1946
BsgI GTGCAG 1 cut(s) 1869
Bsh1236I CGCG 1 cut(s) 1466
BshFI GGCC 6 cut(s) 345, 352, 639, 823, 1120, 2006
BshNI GGYRCC 1 cut(s) 1664
BshTI ACCGGT 1 cut(s) 1761
BsiHKAI GWGCWC 1 cut(s) 1502
BsiHKCI CYCGRG 1 cut(s) 437
BsiSI CCGG 4 cut(s) 245, 1313, 1619, 1762
BslFI GGGAC 2 cut(s) 429, 1827
BslI CCNNNNNNNGG 5 cut(s) 104, 169, 1754, 1960, 1984
BsmAI GTCTC 3 cut(s) 963, 1805, 1821
BsmFI GGGAC 2 cut(s) 429, 1827
BsnI GGCC 6 cut(s) 345, 352, 639, 823, 1120, 2006
Bso31I GGTCTC 2 cut(s) 1805, 1821
BsoBI CYCGRG 1 cut(s) 437
Bsp1286I GDGCHC 2 cut(s) 1502, 1966
Bsp1407I TGTACA 1 cut(s) 789
Bsp143I GATC 9 cut(s) 94, 769, 837, 958, 996, 1217, 1234, 1240, 1566
BspANI GGCC 6 cut(s) 345, 352, 639, 823, 1120, 2006
BspCNI CTCAG 5 cut(s) 204, 291, 335, 1171, 1333
BspFNI CGCG 1 cut(s) 1466
BspHI TCATGA 1 cut(s) 1908
BspLI GGNNCC 5 cut(s) 998, 1338, 1413, 1666, 1989
BspMAI CTGCAG 1 cut(s) 1273
BspPI GGATC 6 cut(s) 89, 777, 953, 991, 1004, 1225
BspQI GCTCTTC 2 cut(s) 111, 858
BspT107I GGYRCC 1 cut(s) 1664
BspTI CTTAAG 1 cut(s) 11
BspTNI GGTCTC 2 cut(s) 1805, 1821
BsrBI CCGCTC 1 cut(s) 1345
BsrDI GCAATG 2 cut(s) 326, 1991
BsrFI RCCGGY 1 cut(s) 1761
BsrGI TGTACA 1 cut(s) 789
BsrI ACTGG 5 cut(s) 180, 1072, 1646, 1881, 1903
BssAI RCCGGY 1 cut(s) 1761
BssECI CCNNGG 5 cut(s) 39, 438, 1407, 1546, 2001
BssMI GATC 9 cut(s) 94, 769, 837, 958, 996, 1217, 1234, 1240, 1566
Bst2UI CCWGG 4 cut(s) 1408, 1548, 1669, 2003
Bst4CI ACNGT 3 cut(s) 164, 428, 1443
Bst6I CTCTTC 4 cut(s) 111, 813, 858, 1845
BstAFI CTTAAG 1 cut(s) 11
BstAPI GCANNNNNTGC 1 cut(s) 110
BstAUI TGTACA 1 cut(s) 789
BstDEI CTNAG 5 cut(s) 212, 299, 322, 1158, 1341
BstENI CCTNNNNNAGG 1 cut(s) 1752
BstF5I GGATG 7 cut(s) 207, 562, 597, 754, 920, 1253, 1627
BstFNI CGCG 1 cut(s) 1466
BstHHI GCGC 2 cut(s) 1721, 1731
BstKTI GATC 9 cut(s) 97, 772, 840, 961, 999, 1220, 1237, 1243, 1569
BstMAI GTCTC 3 cut(s) 963, 1805, 1821
BstMBI GATC 9 cut(s) 94, 769, 837, 958, 996, 1217, 1234, 1240, 1566
BstMWI GCNNNNNNNGC 9 cut(s) 110, 332, 362, 1082, 1091, 1200, 1424, 1517, 1817
BstNI CCWGG 4 cut(s) 1408, 1548, 1669, 2003
BstNSI RCATGY 3 cut(s) 604, 1198, 1924
BstSCI CCNGG 4 cut(s) 1406, 1546, 1667, 2001
BstSFI CTRYAG 2 cut(s) 1269, 1379
BstSLI GKGCMC 1 cut(s) 1502
BstUI CGCG 1 cut(s) 1466
BstV1I GCAGC 5 cut(s) 1436, 1706, 1733, 1862, 1946
BstV2I GAAGAC 2 cut(s) 137, 1897
BstX2I RGATCY 3 cut(s) 769, 958, 996
BstXI CCANNNNNNTGG 1 cut(s) 534
BstYI RGATCY 3 cut(s) 769, 958, 996
BsuI GTATCC 1 cut(s) 1057
BsuRI GGCC 6 cut(s) 345, 352, 639, 823, 1120, 2006
BtgZI GCGATG 1 cut(s) 354
BtsCI GGATG 7 cut(s) 207, 562, 597, 754, 920, 1253, 1627
BtsI GCAGTG 2 cut(s) 1064, 1266
BtsIMutI CAGTG 6 cut(s) 187, 296, 433, 1064, 1266, 1896
CaiI CAGNNNCTG 2 cut(s) 110, 211
CciI TCATGA 1 cut(s) 1908
CfoI GCGC 2 cut(s) 1721, 1731
Cfr10I RCCGGY 1 cut(s) 1761
Cfr13I GGNCC 5 cut(s) 368, 638, 822, 1118, 1764
CsiI ACCWGGT 1 cut(s) 1667
Csp6I GTAC 5 cut(s) 716, 790, 1592, 1665, 1775
CspAI ACCGGT 1 cut(s) 1761
CspCI CAANNNNNGTGG 2 cut(s) 1375, 1410
CviQI GTAC 5 cut(s) 716, 790, 1592, 1665, 1775
DdeI CTNAG 5 cut(s) 212, 299, 322, 1158, 1341
DpnI GATC 9 cut(s) 96, 771, 839, 960, 998, 1219, 1236, 1242, 1568
DpnII GATC 9 cut(s) 94, 769, 837, 958, 996, 1217, 1234, 1240, 1566
DraI TTTAAA 2 cut(s) 1281, 1534
EaeI YGGCCR 1 cut(s) 343
Eam1104I CTCTTC 4 cut(s) 111, 813, 858, 1845
EarI CTCTTC 4 cut(s) 111, 813, 858, 1845
EciI GGCGGA 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 1966
Eco31I GGTCTC 2 cut(s) 1805, 1821
Eco32I GATATC 1 cut(s) 742
Eco47I GGWCC 2 cut(s) 368, 1764
Eco57I CTGAAG 3 cut(s) 135, 147, 1041
Eco88I CYCGRG 1 cut(s) 437
EcoNI CCTNNNNNAGG 1 cut(s) 1752
EcoRI GAATTC 1 cut(s) 1457
EcoRII CCWGG 4 cut(s) 1406, 1546, 1667, 2001
EcoRV GATATC 1 cut(s) 742
EcoT22I ATGCAT 1 cut(s) 564
EcoT38I GRGCYC 1 cut(s) 1966
FalI AAGNNNNNCTT 2 cut(s) 1074, 1106
FaqI GGGAC 2 cut(s) 429, 1827
FauI CCCGC 2 cut(s) 1804, 1977
FauNDI CATATG 1 cut(s) 1660
FbaI TGATCA 2 cut(s) 837, 1234
Fnu4HI GCNGC 6 cut(s) 138, 1425, 1695, 1722, 1851, 1935
FokI GGATG 7 cut(s) 214, 549, 604, 741, 927, 1260, 1634
FriOI GRGCYC 1 cut(s) 1966
Fsp4HI GCNGC 6 cut(s) 138, 1425, 1695, 1722, 1851, 1935
FspBI CTAG 3 cut(s) 1095, 1131, 1751
FspI TGCGCA 2 cut(s) 1720, 1730
GlaI GCGC 2 cut(s) 1720, 1730
GluI GCNGC 6 cut(s) 138, 1425, 1695, 1722, 1851, 1935
GsuI CTGGAG 1 cut(s) 1920
HaeIII GGCC 6 cut(s) 345, 352, 639, 823, 1120, 2006
HapII CCGG 4 cut(s) 245, 1313, 1619, 1762
HhaI GCGC 2 cut(s) 1721, 1731
Hin6I GCGC 2 cut(s) 1719, 1729
HinP1I GCGC 2 cut(s) 1719, 1729
HindIII AAGCTT 2 cut(s) 8, 1083
HinfI GANTC 4 cut(s) 35, 538, 1355, 1902
HpaII CCGG 4 cut(s) 245, 1313, 1619, 1762
HphI GGTGA 3 cut(s) 1193, 1573, 2009
Hpy166II GTNNAC 5 cut(s) 313, 598, 1500, 1594, 2017
Hpy188I TCNGA 6 cut(s) 450, 483, 842, 1234, 1261, 1452
Hpy188III TCNNGA 7 cut(s) 98, 211, 507, 979, 1238, 1751, 1909
Hpy8I GTNNAC 5 cut(s) 313, 598, 1500, 1594, 2017
HpyAV CCTTC 9 cut(s) 17, 69, 200, 297, 392, 555, 1268, 1748, 2007
HpyCH4III ACNGT 3 cut(s) 164, 428, 1443
HpyF10VI GCNNNNNNNGC 9 cut(s) 110, 332, 362, 1082, 1091, 1200, 1424, 1517, 1817
HpyF3I CTNAG 5 cut(s) 212, 299, 322, 1158, 1341
HspAI GCGC 2 cut(s) 1719, 1729
KpnI GGTACC 1 cut(s) 1668
Ksp22I TGATCA 2 cut(s) 837, 1234
Kzo9I GATC 9 cut(s) 94, 769, 837, 958, 996, 1217, 1234, 1240, 1566
LguI GCTCTTC 2 cut(s) 111, 858
LmnI GCTCC 2 cut(s) 442, 1691
Lsp1109I GCAGC 5 cut(s) 1436, 1706, 1733, 1862, 1946
LweI GCATC 7 cut(s) 192, 283, 454, 571, 994, 1026, 1296
MabI ACCWGGT 1 cut(s) 1667
MaeI CTAG 3 cut(s) 1095, 1131, 1751
MaeIII GTNAC 3 cut(s) 464, 859, 1181
MalI GATC 9 cut(s) 96, 771, 839, 960, 998, 1219, 1236, 1242, 1568
MbiI CCGCTC 1 cut(s) 1345
MboI GATC 9 cut(s) 94, 769, 837, 958, 996, 1217, 1234, 1240, 1566
MfeI CAATTG 2 cut(s) 662, 703
MflI RGATCY 3 cut(s) 769, 958, 996
MhlI GDGCHC 2 cut(s) 1502, 1966
MlsI TGGCCA 1 cut(s) 345
MluNI TGGCCA 1 cut(s) 345
MlyI GAGTC 1 cut(s) 1911
MmeI TCCRAC 2 cut(s) 1303, 1475
Mox20I TGGCCA 1 cut(s) 345
Mph1103I ATGCAT 1 cut(s) 564
MscI TGGCCA 1 cut(s) 345
MseI TTAA 6 cut(s) 12, 174, 423, 1280, 1445, 1533
MslI CAYNNNNRTG 4 cut(s) 401, 605, 726, 1488
Msp20I TGGCCA 1 cut(s) 345
MspA1I CMGCKG 1 cut(s) 1697
MspCI CTTAAG 1 cut(s) 11
MspI CCGG 4 cut(s) 245, 1313, 1619, 1762
MspR9I CCNGG 4 cut(s) 1408, 1548, 1669, 2003
MunI CAATTG 2 cut(s) 662, 703
MvaI CCWGG 4 cut(s) 1408, 1548, 1669, 2003
MvnI CGCG 1 cut(s) 1466
MwoI GCNNNNNNNGC 9 cut(s) 110, 332, 362, 1082, 1091, 1200, 1424, 1517, 1817
NdeI CATATG 1 cut(s) 1660
NdeII GATC 9 cut(s) 94, 769, 837, 958, 996, 1217, 1234, 1240, 1566
NlaIV GGNNCC 5 cut(s) 998, 1338, 1413, 1666, 1989
NmeAIII GCCGAG 1 cut(s) 20
NmuCI GTSAC 2 cut(s) 859, 1181
NsbI TGCGCA 2 cut(s) 1720, 1730
NsiI ATGCAT 1 cut(s) 564
NspI RCATGY 3 cut(s) 604, 1198, 1924
PaeI GCATGC 2 cut(s) 1198, 1924
PagI TCATGA 1 cut(s) 1908
PciSI GCTCTTC 2 cut(s) 111, 858
PfeI GAWTC 3 cut(s) 35, 538, 1355
PinAI ACCGGT 1 cut(s) 1761
PkrI GCNGC 6 cut(s) 139, 1426, 1696, 1723, 1852, 1936
PleI GAGTC 1 cut(s) 1910
PpsI GAGTC 1 cut(s) 1910
PsiI TTATAA 2 cut(s) 272, 1862
Psp6I CCWGG 4 cut(s) 1406, 1546, 1667, 2001
PspGI CCWGG 4 cut(s) 1406, 1546, 1667, 2001
PspN4I GGNNCC 5 cut(s) 998, 1338, 1413, 1666, 1989
PspPI GGNCC 5 cut(s) 368, 638, 822, 1118, 1764
PsrI GAACNNNNNNTAC 2 cut(s) 884, 916
PstI CTGCAG 1 cut(s) 1273
PstNI CAGNNNCTG 2 cut(s) 110, 211
PsuI RGATCY 3 cut(s) 769, 958, 996
PvuII CAGCTG 1 cut(s) 1697
RsaI GTAC 5 cut(s) 717, 791, 1593, 1666, 1776
RsaNI GTAC 5 cut(s) 716, 790, 1592, 1665, 1775
RseI CAYNNNNRTG 4 cut(s) 401, 605, 726, 1488
SapI GCTCTTC 2 cut(s) 111, 858
SaqAI TTAA 6 cut(s) 12, 174, 423, 1280, 1445, 1533
SatI GCNGC 6 cut(s) 138, 1425, 1695, 1722, 1851, 1935
Sau3AI GATC 9 cut(s) 94, 769, 837, 958, 996, 1217, 1234, 1240, 1566
Sau96I GGNCC 5 cut(s) 368, 638, 822, 1118, 1764
SchI GAGTC 1 cut(s) 1911
ScrFI CCNGG 4 cut(s) 1408, 1548, 1669, 2003
SduI GDGCHC 2 cut(s) 1502, 1966
SexAI ACCWGGT 1 cut(s) 1667
SfaNI GCATC 7 cut(s) 192, 283, 454, 571, 994, 1026, 1296
SfcI CTRYAG 2 cut(s) 1269, 1379
SinI GGWCC 2 cut(s) 368, 1764
SmiMI CAYNNNNRTG 4 cut(s) 401, 605, 726, 1488
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
SphI GCATGC 2 cut(s) 1198, 1924
SspMI CTAG 3 cut(s) 1095, 1131, 1751
StyD4I CCNGG 4 cut(s) 1406, 1546, 1667, 2001
TaaI ACNGT 3 cut(s) 164, 428, 1443
TaqI TCGA 2 cut(s) 1301, 1569
TatI WGTACW 2 cut(s) 789, 1774
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 3 cut(s) 35, 538, 1355
Tru1I TTAA 6 cut(s) 12, 174, 423, 1280, 1445, 1533
Tru9I TTAA 6 cut(s) 12, 174, 423, 1280, 1445, 1533
TscAI CASTG 6 cut(s) 187, 303, 433, 1064, 1273, 1903
TseFI GTSAC 2 cut(s) 859, 1181
TseI GCWGC 5 cut(s) 1424, 1694, 1721, 1850, 1934
Tsp45I GTSAC 2 cut(s) 859, 1181
TspRI CASTG 6 cut(s) 187, 303, 433, 1064, 1273, 1903
Vha464I CTTAAG 1 cut(s) 11
VneI GTGCAC 1 cut(s) 1498
VpaK11BI GGWCC 2 cut(s) 368, 1764
XagI CCTNNNNNAGG 1 cut(s) 1752
XapI RAATTY 2 cut(s) 456, 1457
XbaI TCTAGA 1 cut(s) 1750
XceI RCATGY 3 cut(s) 604, 1198, 1924
XcmI CCANNNNNNNNNTGG 3 cut(s) 573, 916, 1008
XspI CTAG 3 cut(s) 1095, 1131, 1751
Zsp2I ATGCAT 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.