Rh2DG403100

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000173
Physical Location & Seq
Reverse (-)
58663356 .. 58690185
26830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG403100.1

Sequence Viewer

Length: 636 bp
ATGTGGAAGCTTAGGTTTGGAAACGAAGGTGCAAATAATGACCCTTACAGTCCTTACTTGTTTAGCACAAACAAATTTTATGGGAGGCAAACATGGGAGTTTGACCCGGCTGCCGGCACGCCTGAAGAGCGAGCAGAGGTCGAAGAAGTTCGACTAAGTTTTTACAACAATCGTCACCAGGTCCAGGCTTGCAGTGACCTTCTCTGCCGAATGCAGCTTCTGGGAGAGAAAAAGTTTAAACAAAAGATTCCCCAAGTAAAGGTGGAGGATGGTGAGGACTGTACATATGAAAAGGCCACCGCTGCATTCACAAGGGCAGCTACCTTCTACTCTGCCTTGCAATCACCTCACGGTCATTGGCCTGCTGAACTTGCCGGTCTCATGTTTTATATTCCTTCCTTGATCTATACACCACTTGAAGGCGAACGGTCAAATTTGGTGCAGACTGCAATAGGACTAATGGGATTAATTCATGGTGGACAGCTAGTACTTTATGGTTTTGTATTTCCAGATGGGCAACTGGTCGTGTTCTCTCTGCGCAAAGTCTTTCAGACAGAGAAGGAAGCGTTGGAAGAAGCGTCTAATGCAAAAGATTCTGCAACTATTTCTAAGGCTGTTACGCTCAGTCCAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

211

Amino Acids

23.69

Weight (kDa)

5.64

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 539
AciI CCGC 1 cut(s) 300
AcsI RAATTY 2 cut(s) 74, 433
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 2 cut(s) 283, 489
AfiI CCNNNNNNNGG 4 cut(s) 113, 184, 259, 419
AgsI TTSAA 1 cut(s) 419
AjnI CCWGG 2 cut(s) 177, 183
AjuI GAANNNNNNNTTGG 2 cut(s) 551, 583
AluBI AGCT 4 cut(s) 10, 217, 320, 484
AluI AGCT 4 cut(s) 10, 217, 320, 484
Alw26I GTCTC 1 cut(s) 383
AlwNI CAGNNNCTG 1 cut(s) 220
AoxI GGCC 2 cut(s) 294, 359
ApeKI GCWGC 4 cut(s) 110, 214, 302, 317
ApoI RAATTY 2 cut(s) 74, 433
AseI ATTAAT 1 cut(s) 467
Asp700I GAANNNNTTC 1 cut(s) 147
AspLEI GCGC 1 cut(s) 540
AspS9I GGNCC 1 cut(s) 181
AsuC2I CCSGG 1 cut(s) 107
AsuHPI GGTGA 3 cut(s) 167, 284, 336
AvaII GGWCC 1 cut(s) 181
BbvI GCAGC 4 cut(s) 97, 226, 289, 329
BccI CCATC 2 cut(s) 263, 506
BciT130I CCWGG 2 cut(s) 179, 185
BcnI CCSGG 1 cut(s) 107
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 1 cut(s) 485
BisI GCNGC 4 cut(s) 111, 215, 303, 318
BlsI GCNGC 4 cut(s) 112, 216, 304, 319
BmcAI AGTACT 1 cut(s) 489
Bme1390I CCNGG 3 cut(s) 107, 179, 185
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 181
BmrFI CCNGG 3 cut(s) 107, 179, 185
Bpu10I CCTNAGC 1 cut(s) 11
BpuMI CCSGG 1 cut(s) 107
BsaI GGTCTC 1 cut(s) 383
Bsc4I CCNNNNNNNGG 4 cut(s) 113, 184, 259, 419
Bse118I RCCGGY 2 cut(s) 113, 374
Bse1I ACTGG 1 cut(s) 525
BseBI CCWGG 2 cut(s) 179, 185
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 4 cut(s) 113, 184, 259, 419
BseNI ACTGG 1 cut(s) 525
BseXI GCAGC 4 cut(s) 97, 226, 289, 329
BsgI GTGCAG 1 cut(s) 461
BshFI GGCC 2 cut(s) 296, 361
BsiSI CCGG 3 cut(s) 107, 114, 375
BslI CCNNNNNNNGG 4 cut(s) 113, 184, 259, 419
BsmAI GTCTC 1 cut(s) 383
BsmI GAATGC 2 cut(s) 216, 305
BsnI GGCC 2 cut(s) 296, 361
Bso31I GGTCTC 1 cut(s) 383
Bsp1407I TGTACA 1 cut(s) 281
Bsp143I GATC 1 cut(s) 402
BspACI CCGC 1 cut(s) 300
BspANI GGCC 2 cut(s) 296, 361
BspCNI CTCAG 1 cut(s) 636
BspQI GCTCTTC 1 cut(s) 120
BspTNI GGTCTC 1 cut(s) 383
BsrFI RCCGGY 2 cut(s) 113, 374
BsrGI TGTACA 1 cut(s) 281
BsrI ACTGG 1 cut(s) 525
BssAI RCCGGY 2 cut(s) 113, 374
BssMI GATC 1 cut(s) 402
Bst2UI CCWGG 2 cut(s) 179, 185
Bst4CI ACNGT 4 cut(s) 50, 281, 353, 429
Bst6I CTCTTC 1 cut(s) 120
BstAUI TGTACA 1 cut(s) 281
BstC8I GCNNGC 5 cut(s) 115, 119, 132, 190, 363
BstDEI CTNAG 4 cut(s) 11, 155, 609, 623
BstF5I GGATG 1 cut(s) 274
BstHHI GCGC 1 cut(s) 540
BstKTI GATC 1 cut(s) 405
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 1 cut(s) 402
BstMWI GCNNNNNNNGC 4 cut(s) 127, 302, 371, 584
BstNI CCWGG 2 cut(s) 179, 185
BstSCI CCNGG 3 cut(s) 105, 177, 183
BstV1I GCAGC 4 cut(s) 97, 226, 289, 329
BsuRI GGCC 2 cut(s) 296, 361
BtsCI GGATG 1 cut(s) 274
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 5 cut(s) 115, 119, 132, 190, 363
CaiI CAGNNNCTG 1 cut(s) 220
CfoI GCGC 1 cut(s) 540
Cfr10I RCCGGY 2 cut(s) 113, 374
Cfr13I GGNCC 1 cut(s) 181
CseI GACGC 1 cut(s) 567
CsiI ACCWGGT 1 cut(s) 177
Csp6I GTAC 2 cut(s) 282, 488
CviAII CATG 3 cut(s) 93, 382, 473
CviJI RGCY 9 cut(s) 10, 110, 188, 217, 296, 320, 361, 484, 614
CviKI_1 RGCY 9 cut(s) 10, 110, 188, 217, 296, 320, 361, 484, 614
CviQI GTAC 2 cut(s) 282, 488
DdeI CTNAG 4 cut(s) 11, 155, 609, 623
DpnI GATC 1 cut(s) 404
DpnII GATC 1 cut(s) 402
DraI TTTAAA 1 cut(s) 238
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco31I GGTCTC 1 cut(s) 383
Eco47I GGWCC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 144
EcoRII CCWGG 2 cut(s) 177, 183
FaeI CATG 3 cut(s) 96, 385, 476
FaiI YATR 9 cut(s) 81, 94, 286, 288, 383, 390, 408, 474, 495
FatI CATG 3 cut(s) 92, 381, 472
FauNDI CATATG 1 cut(s) 286
Fnu4HI GCNGC 4 cut(s) 111, 215, 303, 318
FokI GGATG 1 cut(s) 281
Fsp4HI GCNGC 4 cut(s) 111, 215, 303, 318
FspBI CTAG 1 cut(s) 485
FspI TGCGCA 1 cut(s) 539
GlaI GCGC 1 cut(s) 539
GluI GCNGC 4 cut(s) 111, 215, 303, 318
HaeIII GGCC 2 cut(s) 296, 361
HapII CCGG 3 cut(s) 107, 114, 375
HgaI GACGC 1 cut(s) 567
HhaI GCGC 1 cut(s) 540
Hin1II CATG 3 cut(s) 96, 385, 476
Hin6I GCGC 1 cut(s) 538
HinP1I GCGC 1 cut(s) 538
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 2 cut(s) 247, 593
HpaII CCGG 3 cut(s) 107, 114, 375
HphI GGTGA 3 cut(s) 167, 284, 336
Hpy166II GTNNAC 1 cut(s) 479
Hpy188I TCNGA 1 cut(s) 552
Hpy188III TCNNGA 1 cut(s) 509
Hpy8I GTNNAC 1 cut(s) 479
HpyAV CCTTC 6 cut(s) 20, 209, 334, 405, 413, 553
HpyCH4III ACNGT 4 cut(s) 50, 281, 353, 429
HpyCH4V TGCA 9 cut(s) 32, 192, 214, 305, 340, 442, 449, 587, 599
HpyF10VI GCNNNNNNNGC 4 cut(s) 127, 302, 371, 584
HpyF3I CTNAG 4 cut(s) 11, 155, 609, 623
Hsp92II CATG 3 cut(s) 96, 385, 476
HspAI GCGC 1 cut(s) 538
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Kzo9I GATC 1 cut(s) 402
LguI GCTCTTC 1 cut(s) 120
Lsp1109I GCAGC 4 cut(s) 97, 226, 289, 329
MabI ACCWGGT 1 cut(s) 177
MaeI CTAG 1 cut(s) 485
MaeIII GTNAC 3 cut(s) 173, 194, 616
MalI GATC 1 cut(s) 404
MboI GATC 1 cut(s) 402
MboII GAAGA 3 cut(s) 137, 155, 584
MluCI AATT 3 cut(s) 74, 433, 468
MmeI TCCRAC 1 cut(s) 549
MnlI CCTC 5 cut(s) 78, 130, 259, 268, 357
MroNI GCCGGC 1 cut(s) 113
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 3 cut(s) 237, 467, 634
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 3 cut(s) 107, 114, 375
MspR9I CCNGG 3 cut(s) 107, 179, 185
MssI GTTTAAAC 1 cut(s) 238
Mva1269I GAATGC 2 cut(s) 216, 305
MvaI CCWGG 2 cut(s) 179, 185
MwoI GCNNNNNNNGC 4 cut(s) 127, 302, 371, 584
NaeI GCCGGC 1 cut(s) 115
NciI CCSGG 1 cut(s) 107
NdeI CATATG 1 cut(s) 286
NdeII GATC 1 cut(s) 402
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 3 cut(s) 96, 385, 476
NmuCI GTSAC 2 cut(s) 173, 194
NsbI TGCGCA 1 cut(s) 539
PciSI GCTCTTC 1 cut(s) 120
PctI GAATGC 2 cut(s) 216, 305
PdiI GCCGGC 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 2 cut(s) 247, 593
PkrI GCNGC 4 cut(s) 112, 216, 304, 319
PmeI GTTTAAAC 1 cut(s) 238
PshBI ATTAAT 1 cut(s) 467
Psp6I CCWGG 2 cut(s) 177, 183
PspGI CCWGG 2 cut(s) 177, 183
PspPI GGNCC 1 cut(s) 181
PstNI CAGNNNCTG 1 cut(s) 220
RsaI GTAC 2 cut(s) 283, 489
RsaNI GTAC 2 cut(s) 282, 488
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 3 cut(s) 237, 467, 634
SatI GCNGC 4 cut(s) 111, 215, 303, 318
Sau3AI GATC 1 cut(s) 402
Sau96I GGNCC 1 cut(s) 181
ScaI AGTACT 1 cut(s) 489
ScrFI CCNGG 3 cut(s) 107, 179, 185
SexAI ACCWGGT 1 cut(s) 177
SinI GGWCC 1 cut(s) 181
Sse9I AATT 3 cut(s) 74, 433, 468
SsiI CCGC 1 cut(s) 300
SspMI CTAG 1 cut(s) 485
StyD4I CCNGG 3 cut(s) 105, 177, 183
TaaI ACNGT 4 cut(s) 50, 281, 353, 429
TaqI TCGA 2 cut(s) 141, 151
TasI AATT 3 cut(s) 74, 433, 468
TatI WGTACW 2 cut(s) 281, 487
TfiI GAWTC 2 cut(s) 247, 593
Tru1I TTAA 3 cut(s) 237, 467, 634
Tru9I TTAA 3 cut(s) 237, 467, 634
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 2 cut(s) 173, 194
TseI GCWGC 4 cut(s) 110, 214, 302, 317
Tsp45I GTSAC 2 cut(s) 173, 194
TspDTI ATGAA 2 cut(s) 303, 461
TspRI CASTG 1 cut(s) 199
VpaK11BI GGWCC 1 cut(s) 181
VspI ATTAAT 1 cut(s) 467
XapI RAATTY 2 cut(s) 74, 433
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 1 cut(s) 485
ZrmI AGTACT 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.