Rmu_sc0000048.1_g000003

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000048.1
OG0000173
Physical Location & Seq
Reverse (-)
12426 .. 13019
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000048.1_g000003.1.cds

Sequence Viewer

Length: 399 bp
atgctaagagagagaaacttcaagcaagaaattcctccagtaagaattggggaaggtgatgacattacatttgatcaggccacagctgcctacaggaggaatgctaccttctggaatgccttgcaatcaccccatggtcattgtcctgctgaaaatgctggtgtaaattttttctgtcctcccttgagctactcgtacaatcatcagaatgaagatggtgggtggggattgcacatagcagggcctagtatgatgttcaccacacgtctcaactactgtatgatgcgtattctcggagaaggcactgagggtggtcgagataatgcatgtgcaagggcccggaaatggattcttgacggtggtggtgcaaaatattctgcttcatggggaaagacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

132

Amino Acids

14.7

Weight (kDa)

7.71

Isoelectric Point (pI)

53.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 30, 166
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 2 cut(s) 96, 345
AflIII ACRYGT 1 cut(s) 263
AgsI TTSAA 1 cut(s) 22
AjiI CACGTC 1 cut(s) 266
AluBI AGCT 2 cut(s) 86, 189
AluI AGCT 2 cut(s) 86, 189
Alw26I GTCTC 1 cut(s) 272
AoxI GGCC 3 cut(s) 78, 242, 336
ApaI GGGCCC 1 cut(s) 340
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 2 cut(s) 30, 166
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
AspS9I GGNCC 3 cut(s) 242, 336, 337
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 3 cut(s) 68, 120, 250
BaeGI GKGCMC 1 cut(s) 340
BanII GRGCYC 1 cut(s) 340
BbvI GCAGC 1 cut(s) 73
BccI CCATC 1 cut(s) 209
BclI TGATCA 1 cut(s) 73
BcnI CCSGG 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 2 cut(s) 246, 397
BfmI CTRYAG 1 cut(s) 91
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme1390I CCNGG 1 cut(s) 340
BmgBI CACGTC 1 cut(s) 266
BmgT120I GGNCC 3 cut(s) 242, 336, 337
BmiI GGNNCC 1 cut(s) 338
BmrFI CCNGG 1 cut(s) 340
BmsI GCATC 1 cut(s) 273
BpmI CTGGAG 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 205
BpuMI CCSGG 1 cut(s) 340
BsaJI CCNNGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 345
Bse1I ACTGG 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 133
BseLI CCNNNNNNNGG 2 cut(s) 96, 345
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 38
BseSI GKGCMC 1 cut(s) 340
BseXI GCAGC 1 cut(s) 73
BshFI GGCC 3 cut(s) 80, 244, 338
BsiSI CCGG 1 cut(s) 340
BslI CCNNNNNNNGG 2 cut(s) 96, 345
BsmAI GTCTC 1 cut(s) 272
BsmBI CGTCTC 1 cut(s) 272
BsmI GAATGC 2 cut(s) 106, 121
BsnI GGCC 3 cut(s) 80, 244, 338
Bsp120I GGGCCC 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 340
Bsp143I GATC 1 cut(s) 73
Bsp19I CCATGG 1 cut(s) 133
BspANI GGCC 3 cut(s) 80, 244, 338
BspCNI CTCAG 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 338
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 1 cut(s) 73
BssT1I CCWWGG 1 cut(s) 133
Bst4CI ACNGT 2 cut(s) 278, 359
BstDEI CTNAG 2 cut(s) 5, 306
BstDSI CCRYGG 1 cut(s) 133
BstENI CCTNNNNNAGG 1 cut(s) 94
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 2 cut(s) 86, 155
BstNSI RCATGY 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 338
BstSFI CTRYAG 1 cut(s) 91
BstSLI GKGCMC 1 cut(s) 340
BstV1I GCAGC 1 cut(s) 73
BsuRI GGCC 3 cut(s) 80, 244, 338
BtgI CCRYGG 1 cut(s) 133
BtrI CACGTC 1 cut(s) 266
BtsIMutI CAGTG 1 cut(s) 303
Cfr13I GGNCC 3 cut(s) 242, 336, 337
Csp6I GTAC 1 cut(s) 196
CviAII CATG 3 cut(s) 134, 327, 384
CviJI RGCY 5 cut(s) 80, 86, 189, 244, 338
CviKI_1 RGCY 5 cut(s) 80, 86, 189, 244, 338
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 2 cut(s) 5, 306
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 340
EcoNI CCTNNNNNAGG 1 cut(s) 94
EcoO109I RGGNCCY 2 cut(s) 242, 336
EcoT14I CCWWGG 1 cut(s) 133
EcoT22I ATGCAT 1 cut(s) 328
EcoT38I GRGCYC 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 133
Esp3I CGTCTC 1 cut(s) 272
FaeI CATG 3 cut(s) 137, 330, 387
FaiI YATR 6 cut(s) 135, 236, 251, 281, 328, 385
FatI CATG 3 cut(s) 133, 326, 383
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 87
FriOI GRGCYC 1 cut(s) 340
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 2 cut(s) 246, 397
GluI GCNGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 21
HaeIII GGCC 3 cut(s) 80, 244, 338
HapII CCGG 1 cut(s) 340
Hin1II CATG 3 cut(s) 137, 330, 387
HinfI GANTC 1 cut(s) 349
HpaII CCGG 1 cut(s) 340
HphI GGTGA 3 cut(s) 68, 120, 250
Hpy166II GTNNAC 1 cut(s) 258
Hpy188I TCNGA 2 cut(s) 207, 296
Hpy188III TCNNGA 3 cut(s) 112, 317, 353
Hpy8I GTNNAC 1 cut(s) 258
HpyAV CCTTC 3 cut(s) 47, 118, 293
HpyCH4III ACNGT 2 cut(s) 278, 359
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 5 cut(s) 124, 232, 326, 332, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 155
HpyF3I CTNAG 2 cut(s) 5, 306
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 3 cut(s) 137, 330, 387
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 8 cut(s) 51, 62, 79, 97, 144, 159, 225, 353
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 1 cut(s) 273
MaeI CTAG 2 cut(s) 246, 397
MaeII ACGT 1 cut(s) 265
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 1 cut(s) 224
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 3 cut(s) 30, 45, 166
MnlI CCTC 4 cut(s) 45, 90, 189, 301
Mph1103I ATGCAT 1 cut(s) 328
MslI CAYNNNNRTG 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 1 cut(s) 340
MspR9I CCNGG 1 cut(s) 340
Mva1269I GAATGC 2 cut(s) 106, 121
MwoI GCNNNNNNNGC 2 cut(s) 86, 155
NciI CCSGG 1 cut(s) 340
NcoI CCATGG 1 cut(s) 133
NdeII GATC 1 cut(s) 73
NlaIII CATG 3 cut(s) 137, 330, 387
NlaIV GGNNCC 1 cut(s) 338
NsiI ATGCAT 1 cut(s) 328
NspI RCATGY 1 cut(s) 330
PctI GAATGC 2 cut(s) 106, 121
PfeI GAWTC 1 cut(s) 349
PkrI GCNGC 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 338
PspOMI GGGCCC 1 cut(s) 336
PspPI GGNCC 3 cut(s) 242, 336, 337
PvuII CAGCTG 1 cut(s) 86
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 207
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 3 cut(s) 242, 336, 337
ScrFI CCNGG 1 cut(s) 340
SduI GDGCHC 1 cut(s) 340
SetI ASST 6 cut(s) 58, 88, 110, 191, 268, 398
SfaNI GCATC 1 cut(s) 273
SfcI CTRYAG 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 3 cut(s) 30, 45, 166
SspI AATATT 1 cut(s) 374
SspMI CTAG 2 cut(s) 246, 397
StyD4I CCNGG 1 cut(s) 338
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 2 cut(s) 278, 359
TaiI ACGT 1 cut(s) 268
TaqI TCGA 1 cut(s) 316
TasI AATT 3 cut(s) 30, 45, 166
TfiI GAWTC 1 cut(s) 349
TscAI CASTG 1 cut(s) 310
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 2 cut(s) 225, 372
TspRI CASTG 1 cut(s) 310
XagI CCTNNNNNAGG 1 cut(s) 94
XapI RAATTY 2 cut(s) 30, 166
XceI RCATGY 1 cut(s) 330
XspI CTAG 2 cut(s) 246, 397
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.