Rmu_sc0002070.1_g000055

Belongs to the terpene cyclase mutase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002070.1
Physical Location & Seq
Reverse (-)
243787 .. 246023
2237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002070.1_g000055.1.cds

Sequence Viewer

Length: 450 bp
atgtggaagcttaggtttggaaacgaaggtgcaaataatgacccttatagtccttacttgtttagcacaaacaacttttatgggaggcaaacatgggagtttgacctggctgccggtacgcctgaagagcgagcagaggtcgaagaagttcgactaagtttttacaacaatcgtcaccaggtccaggcttgcagtgacctcctctgccgaatgcaggtgcttctgggagagaaaaagttcaaacaaaagattccccaagtaaaagtggaggatggtgaggactgtacatatgaaaaggccaccgctgcattcacaagagcagctaccttctactctgccttgcaatcacctcacggccattggcctgctgaacatgccggtctcatgttttatattccttccttggtgagtgtgcaatgcaattccacaatatgcctaaaacctgtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

149

Amino Acids

17.02

Weight (kDa)

6.07

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 205
Acc36I ACCTGC 1 cut(s) 205
AciI CCGC 1 cut(s) 303
AcoI YGGCCR 1 cut(s) 355
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 2 cut(s) 118, 286
AfiI CCNNNNNNNGG 2 cut(s) 184, 214
AgsI TTSAA 1 cut(s) 241
AjnI CCWGG 3 cut(s) 105, 177, 183
AluBI AGCT 2 cut(s) 10, 323
AluI AGCT 2 cut(s) 10, 323
Alw26I GTCTC 1 cut(s) 386
AoxI GGCC 3 cut(s) 297, 355, 362
ApeKI GCWGC 3 cut(s) 110, 305, 320
Asp700I GAANNNNTTC 2 cut(s) 147, 236
AspS9I GGNCC 1 cut(s) 181
AsuHPI GGTGA 4 cut(s) 167, 287, 339, 418
AvaII GGWCC 1 cut(s) 181
BbvI GCAGC 3 cut(s) 97, 292, 332
BccI CCATC 1 cut(s) 266
BceAI ACGGC 1 cut(s) 370
BciT130I CCWGG 3 cut(s) 107, 179, 185
BcoDI GTCTC 1 cut(s) 386
BfuAI ACCTGC 1 cut(s) 205
BisI GCNGC 3 cut(s) 111, 306, 321
BlsI GCNGC 3 cut(s) 112, 307, 322
Bme1390I CCNGG 3 cut(s) 107, 179, 185
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 181
BmrFI CCNGG 3 cut(s) 107, 179, 185
Bpu10I CCTNAGC 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 386
BsaJI CCNNGG 1 cut(s) 402
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 214
Bse118I RCCGGY 2 cut(s) 113, 377
Bse3DI GCAATG 1 cut(s) 422
BseBI CCWGG 3 cut(s) 107, 179, 185
BseDI CCNNGG 1 cut(s) 402
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 2 cut(s) 184, 214
BseMI GCAATG 1 cut(s) 422
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 3 cut(s) 97, 292, 332
BshFI GGCC 3 cut(s) 299, 357, 364
BsiSI CCGG 2 cut(s) 114, 378
BslI CCNNNNNNNGG 2 cut(s) 184, 214
BsmAI GTCTC 1 cut(s) 386
BsmI GAATGC 2 cut(s) 216, 308
BsnI GGCC 3 cut(s) 299, 357, 364
Bso31I GGTCTC 1 cut(s) 386
Bsp1407I TGTACA 1 cut(s) 284
BspACI CCGC 1 cut(s) 303
BspANI GGCC 3 cut(s) 299, 357, 364
BspMI ACCTGC 1 cut(s) 205
BspQI GCTCTTC 1 cut(s) 120
BspTNI GGTCTC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 422
BsrFI RCCGGY 2 cut(s) 113, 377
BsrGI TGTACA 1 cut(s) 284
BssAI RCCGGY 2 cut(s) 113, 377
BssECI CCNNGG 1 cut(s) 402
BssT1I CCWWGG 1 cut(s) 402
Bst2UI CCWGG 3 cut(s) 107, 179, 185
Bst4CI ACNGT 1 cut(s) 284
Bst6I CTCTTC 1 cut(s) 120
BstAUI TGTACA 1 cut(s) 284
BstC8I GCNNGC 3 cut(s) 132, 190, 366
BstDEI CTNAG 2 cut(s) 11, 155
BstF5I GGATG 1 cut(s) 277
BstMAI GTCTC 1 cut(s) 386
BstMWI GCNNNNNNNGC 3 cut(s) 127, 305, 374
BstNI CCWGG 3 cut(s) 107, 179, 185
BstNSI RCATGY 1 cut(s) 377
BstSCI CCNGG 3 cut(s) 105, 177, 183
BstV1I GCAGC 3 cut(s) 97, 292, 332
BsuRI GGCC 3 cut(s) 299, 357, 364
BtsCI GGATG 1 cut(s) 277
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 199
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 3 cut(s) 132, 190, 366
Cfr10I RCCGGY 2 cut(s) 113, 377
Cfr13I GGNCC 1 cut(s) 181
CsiI ACCWGGT 1 cut(s) 177
Csp6I GTAC 2 cut(s) 117, 285
CviAII CATG 3 cut(s) 93, 374, 385
CviJI RGCY 7 cut(s) 10, 110, 188, 299, 323, 357, 364
CviKI_1 RGCY 7 cut(s) 10, 110, 188, 299, 323, 357, 364
CviQI GTAC 2 cut(s) 117, 285
DdeI CTNAG 2 cut(s) 11, 155
EaeI YGGCCR 1 cut(s) 355
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 402
Eco31I GGTCTC 1 cut(s) 386
Eco47I GGWCC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 144
EcoRII CCWGG 3 cut(s) 105, 177, 183
EcoT14I CCWWGG 1 cut(s) 402
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 3 cut(s) 96, 377, 388
FaiI YATR 9 cut(s) 48, 81, 94, 289, 291, 375, 386, 393, 433
FatI CATG 3 cut(s) 92, 373, 384
FauNDI CATATG 1 cut(s) 289
Fnu4HI GCNGC 3 cut(s) 111, 306, 321
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 3 cut(s) 111, 306, 321
GluI GCNGC 3 cut(s) 111, 306, 321
HaeIII GGCC 3 cut(s) 299, 357, 364
HapII CCGG 2 cut(s) 114, 378
Hin1II CATG 3 cut(s) 96, 377, 388
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 1 cut(s) 250
HpaII CCGG 2 cut(s) 114, 378
HphI GGTGA 4 cut(s) 167, 287, 339, 418
Hpy188I TCNGA 1 cut(s) 449
HpyAV CCTTC 3 cut(s) 20, 337, 408
HpyCH4III ACNGT 1 cut(s) 284
HpyCH4V TGCA 7 cut(s) 32, 192, 214, 308, 343, 415, 420
HpyF10VI GCNNNNNNNGC 3 cut(s) 127, 305, 374
HpyF3I CTNAG 2 cut(s) 11, 155
Hsp92II CATG 3 cut(s) 96, 377, 388
LguI GCTCTTC 1 cut(s) 120
Lsp1109I GCAGC 3 cut(s) 97, 292, 332
MabI ACCWGGT 1 cut(s) 177
MaeIII GTNAC 2 cut(s) 173, 194
MboII GAAGA 2 cut(s) 137, 155
MluCI AATT 1 cut(s) 421
MnlI CCTC 7 cut(s) 78, 130, 209, 212, 262, 271, 360
MroXI GAANNNNTTC 2 cut(s) 147, 236
MspA1I CMGCKG 1 cut(s) 305
MspI CCGG 2 cut(s) 114, 378
MspR9I CCNGG 3 cut(s) 107, 179, 185
Mva1269I GAATGC 2 cut(s) 216, 308
MvaI CCWGG 3 cut(s) 107, 179, 185
MwoI GCNNNNNNNGC 3 cut(s) 127, 305, 374
NdeI CATATG 1 cut(s) 289
NlaIII CATG 3 cut(s) 96, 377, 388
NmuCI GTSAC 2 cut(s) 173, 194
NspI RCATGY 1 cut(s) 377
PaqCI CACCTGC 1 cut(s) 205
PciSI GCTCTTC 1 cut(s) 120
PctI GAATGC 2 cut(s) 216, 308
PdmI GAANNNNTTC 2 cut(s) 147, 236
PfeI GAWTC 1 cut(s) 250
PkrI GCNGC 3 cut(s) 112, 307, 322
Psp6I CCWGG 3 cut(s) 105, 177, 183
PspGI CCWGG 3 cut(s) 105, 177, 183
PspPI GGNCC 1 cut(s) 181
RsaI GTAC 2 cut(s) 118, 286
RsaNI GTAC 2 cut(s) 117, 285
SapI GCTCTTC 1 cut(s) 120
SatI GCNGC 3 cut(s) 111, 306, 321
Sau96I GGNCC 1 cut(s) 181
ScrFI CCNGG 3 cut(s) 107, 179, 185
SexAI ACCWGGT 1 cut(s) 177
SinI GGWCC 1 cut(s) 181
Sse9I AATT 1 cut(s) 421
SsiI CCGC 1 cut(s) 303
StyD4I CCNGG 3 cut(s) 105, 177, 183
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 1 cut(s) 284
TaqI TCGA 2 cut(s) 141, 151
TasI AATT 1 cut(s) 421
TatI WGTACW 1 cut(s) 284
TfiI GAWTC 1 cut(s) 250
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 2 cut(s) 173, 194
TseI GCWGC 3 cut(s) 110, 305, 320
Tsp45I GTSAC 2 cut(s) 173, 194
TspDTI ATGAA 1 cut(s) 306
TspRI CASTG 1 cut(s) 199
VpaK11BI GGWCC 1 cut(s) 181
XceI RCATGY 1 cut(s) 377
XmnI GAANNNNTTC 2 cut(s) 147, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.