Rh2DG487900

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000173
Physical Location & Seq
Forward (+)
70479820 .. 70487355
7536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG487900.1

Sequence Viewer

Length: 2076 bp
ATGCAGCTTCTGGGAGAGAAAAAGTTCAAACAAAAGATTCCCCAAGTAAAGGTGGAGGATGGTGAGGACTGTACATATGAAAAGGCCACCGCTGCATTCAAAAGGGCAGCTACCTTCTACTCTGCCTTGCAATCACCTCACGGCCATTGGCCTGCTGCAAGTGTCGGTCCCATGTTTTATATTCCTTCCTTGGTCATACCGCTCTATATTATGGGGCATCTTAGTAAGGTGTTCTCTGCAGAGCATTATAAGGAAATGCTTAGATATATATACTGTCATCAGAACGAGGATGGTGGGTGGGGATTACACATAGAGGGCCCTAGTATGATGTATTGTACACTTCTGAACTACATTTGCATGCGTCTACTTGGAGAAGGACCTGACGGTGGTTTAAACAACGCTTGTGCAAGAGCACGCAAGTGGATTCTTGATCATGGTGGTGCAACACATTCATCATCCTGGGGAAAGACTTTTATGGCAATACTCGGTGTGTATGAGTGGGAGGGTTGCAACCCGTTTCCCCCAGAGTTTTGGATTTTCTCATCTTTGTTCCCTTTGAATCCAGCAAATATGTTCTGCCATGGCCGGTTGACTTTCTTGCCTATGTCGTATCTGTTTGGGAAAAGATTTGTTGGCCCCATCACCCCTCTCATTCTACAACTGAGAGAAGAAATGTACAATGAGCCATACAGTGAAATTCAATGGGGCAAAGTACGCCATCTCTGTGCAAAGGAGGATAACTACTATCCCCATGGCAAGTTACAATGTTTGTTGTGGGATACTCTTAGCACAGTTTATGAGCCTCTTCTTTCTTGCTGGCCCTTCAATAAGTTGAGAGAGAAGGCTCTTCAAGAAACTATTGAAAACATTCATTATGAAGATGAAAATAGTAGATATATAACTATTGGATGTGTGGAAAAGCCCTTAATGATGCTTGCTTGCTGGATTGAAGATCCGAATGGAGAATCCTTTAAGAAGCATCTTGCAAGAGTTATAGATTACATATGGGTTGCAGAAGATGGAATAACTACGCAGAGTTTTGGTAGCCAGGCATGGGATGCTAGTCTTTCTGTTCAAGCTTTGCTTGCTGGAAATCTCACTGATGAACTTGGATCTGTACTTCAGAAAGCACATGAATTCCTAAACAAATCTCAGGTTAGGGATAATCCTTCTGGTGACTTCTTAGCTCGTTTCCGTCACATTTCTAAAGGTAGTTGGACTTTCTCTGACCAAGATCATGGATGGCAAGTGTCTGATTGTACTGCAGAGAGTTTGAAGTGTTGCCTACTGTTTTCAATGATGCCGACGCAAATCGTGGGTGAACCAATTGACTCTGAGCGCTTGTATGATGCTGTTAATGTCATACTTTCTCTGCAAAATTCAAATGGTGGTGTATCAGCCTGGCAGCCAACAGGAGCTCCACAATGGTTGGAGTGGTTCAATCCAGTAGAATTTCTCGAGAATGTCGTCATCGAATACGAGTATGTTGAGTGCACTTCATCTTCAATTCAAGCGTTAACTTTATTCAGGAAGTTATACCCTGGGCATAGAAAGAAACATATCGATGATTTCATCACAAATGCAGCATGTTACCTTGAAGACATGCAAACACCTGATGGCTCATGGTATGGAAAATGGGGAATCTGCTTCATCTATGGAACATGGTTTGCAATTCTCGGGTTGAAGGCTGCTGGTAGAACTTACAAAAATTGTGAGGCGATACGCAGAGGTGTTGAATTTTTACTCAAAATACAGAGAAATGATGGTGGTTGGGGAGAGAGCTACACTTCTTGTACCAACAAGATCTATACACCTCTTGAAGGCGAACGGTCGAATTTGGTGCAGACTGCAATGGGACTAATGGGATTAATTCATGGTGGACAGGCCGAGAGAGACCCTACTCCCATTCACAGAGCTGCAAAGCTTTTGATTAATTCTCAATTGGAAAATGGAGATTTCCCCCAACAGGAACTGGTGGGGGCTTTCAATGTTAATGCCATGTTACACTATGCAGCATACAGGAATATCTTCCCAATTTGGGCTCTCGGAGAATATCGTTCCCTTGCCTCCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

691

Amino Acids

78.56

Weight (kDa)

5.81

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_N PF13249 34 - 295 1.2e-33 Squalene-hopene cyclase N-terminal domain
SQHop_cyclase_C PF13243 349 - 686 1.2e-47 Squalene-hopene cyclase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 249
AccBSI CCGCTC 1 cut(s) 202
AccI GTMKAC 1 cut(s) 364
AciI CCGC 2 cut(s) 90, 200
AclWI GGATC 2 cut(s) 947, 1120
AcoI YGGCCR 2 cut(s) 142, 583
AcsI RAATTY 6 cut(s) 696, 1136, 1378, 1451, 1736, 1834
AcuI CTGAAG 1 cut(s) 1106
AfaI GTAC 7 cut(s) 73, 337, 677, 714, 1119, 1261, 1795
AfeI AGCGCT 1 cut(s) 1340
AfiI CCNNNNNNNGG 6 cut(s) 49, 386, 1054, 1820, 1966, 2038
AjnI CCWGG 4 cut(s) 458, 1047, 1400, 1540
AleI CACNNNNGTG 1 cut(s) 418
AluBI AGCT 8 cut(s) 7, 110, 1079, 1187, 1418, 1782, 1916, 1924
AluI AGCT 8 cut(s) 7, 110, 1079, 1187, 1418, 1782, 1916, 1924
Alw21I GWGCWC 3 cut(s) 415, 1420, 1496
Alw26I GTCTC 1 cut(s) 1887
Alw44I GTGCAC 1 cut(s) 1492
AlwI GGATC 2 cut(s) 947, 1120
AlwNI CAGNNNCTG 2 cut(s) 10, 1972
Ama87I CYCGRG 2 cut(s) 1457, 1676
Aor51HI AGCGCT 1 cut(s) 1340
AoxI GGCC 8 cut(s) 84, 142, 149, 316, 583, 634, 818, 1884
ApaI GGGCCC 1 cut(s) 320
ApaLI GTGCAC 1 cut(s) 1492
ApeKI GCWGC 9 cut(s) 4, 92, 107, 155, 1405, 1583, 1688, 1916, 2012
ApoI RAATTY 6 cut(s) 696, 1136, 1378, 1451, 1736, 1834
AseI ATTAAT 2 cut(s) 1868, 1932
Asp700I GAANNNNTTC 3 cut(s) 23, 867, 2027
AspLEI GCGC 1 cut(s) 1341
AspS9I GGNCC 6 cut(s) 167, 316, 317, 377, 635, 819
AsuHPI GGTGA 5 cut(s) 74, 126, 634, 1187, 1331
AvaI CYCGRG 2 cut(s) 1457, 1676
AvaII GGWCC 2 cut(s) 167, 377
BaeGI GKGCMC 2 cut(s) 320, 1496
BanII GRGCYC 3 cut(s) 320, 1420, 2044
BbsI GAAGAC 1 cut(s) 1605
Bbv12I GWGCWC 3 cut(s) 415, 1420, 1496
BbvI GCAGC 9 cut(s) 16, 79, 119, 142, 1417, 1595, 1675, 1903, 2024
BccI CCATC 8 cut(s) 53, 284, 647, 726, 1013, 1236, 1610, 1757
BceAI ACGGC 1 cut(s) 157
BcgI CGANNNNNNTGC 2 cut(s) 1822, 1856
BciT130I CCWGG 4 cut(s) 460, 1049, 1402, 1542
BciVI GTATCC 1 cut(s) 772
BclI TGATCA 1 cut(s) 430
BcoDI GTCTC 1 cut(s) 1887
BfaI CTAG 3 cut(s) 321, 1062, 2074
BfmI CTRYAG 2 cut(s) 237, 1263
BfoI RGCGCY 1 cut(s) 1342
BfuI GTATCC 1 cut(s) 772
BglII AGATCT 1 cut(s) 1803
BisI GCNGC 9 cut(s) 5, 93, 108, 156, 1406, 1584, 1689, 1917, 2013
BlsI GCNGC 9 cut(s) 6, 94, 109, 157, 1407, 1585, 1690, 1918, 2014
Bme1390I CCNGG 4 cut(s) 460, 1049, 1402, 1542
Bme18I GGWCC 2 cut(s) 167, 377
BmeT110I CYCGRG 2 cut(s) 1457, 1676
BmgT120I GGNCC 6 cut(s) 167, 316, 317, 377, 635, 819
BmiI GGNNCC 3 cut(s) 169, 318, 637
BmrFI CCNGG 4 cut(s) 460, 1049, 1402, 1542
BmsI GCATC 6 cut(s) 226, 921, 988, 1048, 1290, 1339
BpiI GAAGAC 1 cut(s) 1605
Bsa29I ATCGAT 1 cut(s) 1563
BsaI GGTCTC 1 cut(s) 1887
BsaJI CCNNGG 6 cut(s) 189, 459, 580, 751, 1540, 1541
BsaXI ACNNNNNCTCC 2 cut(s) 1402, 1432
Bsc4I CCNNNNNNNGG 6 cut(s) 49, 386, 1054, 1820, 1966, 2038
Bse118I RCCGGY 1 cut(s) 585
Bse1I ACTGG 2 cut(s) 1445, 1977
Bse3DI GCAATG 1 cut(s) 1857
BseBI CCWGG 4 cut(s) 460, 1049, 1402, 1542
BseCI ATCGAT 1 cut(s) 1563
BseDI CCNNGG 6 cut(s) 189, 459, 580, 751, 1540, 1541
BseGI GGATG 6 cut(s) 64, 295, 455, 914, 1063, 1247
BseLI CCNNNNNNNGG 6 cut(s) 49, 386, 1054, 1820, 1966, 2038
BseMI GCAATG 1 cut(s) 1857
BseMII CTCAG 3 cut(s) 653, 1166, 1326
BseNI ACTGG 2 cut(s) 1445, 1977
BseSI GKGCMC 2 cut(s) 320, 1496
BseXI GCAGC 9 cut(s) 16, 79, 119, 142, 1417, 1595, 1675, 1903, 2024
BsgI GTGCAG 1 cut(s) 1862
Bsh1285I CGRYCG 1 cut(s) 1832
BshFI GGCC 8 cut(s) 86, 144, 151, 318, 585, 636, 820, 1886
BshVI ATCGAT 1 cut(s) 1563
BsiEI CGRYCG 1 cut(s) 1832
BsiHKAI GWGCWC 3 cut(s) 415, 1420, 1496
BsiHKCI CYCGRG 2 cut(s) 1457, 1676
BsiSI CCGG 1 cut(s) 586
BslFI GGGAC 2 cut(s) 153, 1869
BslI CCNNNNNNNGG 6 cut(s) 49, 386, 1054, 1820, 1966, 2038
BsmAI GTCTC 1 cut(s) 1887
BsmFI GGGAC 2 cut(s) 153, 1869
BsmI GAATGC 1 cut(s) 95
BsnI GGCC 8 cut(s) 86, 144, 151, 318, 585, 636, 820, 1886
Bso31I GGTCTC 1 cut(s) 1887
BsoBI CYCGRG 2 cut(s) 1457, 1676
Bsp120I GGGCCC 1 cut(s) 316
Bsp1286I GDGCHC 5 cut(s) 320, 415, 1420, 1496, 2044
Bsp1407I TGTACA 3 cut(s) 71, 335, 675
Bsp143I GATC 5 cut(s) 430, 952, 1112, 1234, 1803
Bsp19I CCATGG 2 cut(s) 580, 751
BspACI CCGC 2 cut(s) 90, 200
BspANI GGCC 8 cut(s) 86, 144, 151, 318, 585, 636, 820, 1886
BspCNI CTCAG 3 cut(s) 654, 1165, 1327
BspDI ATCGAT 1 cut(s) 1563
BspLI GGNNCC 3 cut(s) 169, 318, 637
BspMAI CTGCAG 2 cut(s) 241, 1267
BspPI GGATC 2 cut(s) 947, 1120
BspQI GCTCTTC 1 cut(s) 852
BspTNI GGTCTC 1 cut(s) 1887
BsrBI CCGCTC 1 cut(s) 202
BsrDI GCAATG 1 cut(s) 1857
BsrFI RCCGGY 1 cut(s) 585
BsrGI TGTACA 3 cut(s) 71, 335, 675
BsrI ACTGG 2 cut(s) 1445, 1977
BssAI RCCGGY 1 cut(s) 585
BssECI CCNNGG 6 cut(s) 189, 459, 580, 751, 1540, 1541
BssMI GATC 5 cut(s) 430, 952, 1112, 1234, 1803
BssT1I CCWWGG 3 cut(s) 189, 580, 751
Bst2UI CCWGG 4 cut(s) 460, 1049, 1402, 1542
Bst4CI ACNGT 7 cut(s) 71, 275, 386, 692, 793, 1290, 1830
Bst6I CTCTTC 2 cut(s) 810, 852
BstAPI GCANNNNNTGC 1 cut(s) 1058
BstAUI TGTACA 3 cut(s) 71, 335, 675
BstC8I GCNNGC 7 cut(s) 153, 359, 415, 818, 936, 940, 1086
BstDEI CTNAG 7 cut(s) 221, 260, 662, 785, 1152, 1183, 1335
BstDSI CCRYGG 2 cut(s) 580, 751
BstENI CCTNNNNNAGG 1 cut(s) 1818
BstF5I GGATG 6 cut(s) 64, 295, 455, 914, 1063, 1247
BstH2I RGCGCY 1 cut(s) 1342
BstHHI GCGC 1 cut(s) 1341
BstKTI GATC 5 cut(s) 433, 955, 1115, 1237, 1806
BstMAI GTCTC 1 cut(s) 1887
BstMBI GATC 5 cut(s) 430, 952, 1112, 1234, 1803
BstMCI CGRYCG 1 cut(s) 1832
BstMWI GCNNNNNNNGC 4 cut(s) 92, 714, 1058, 1085
BstNI CCWGG 4 cut(s) 460, 1049, 1402, 1542
BstNSI RCATGY 3 cut(s) 361, 1590, 1606
BstSCI CCNGG 4 cut(s) 458, 1047, 1400, 1540
BstSFI CTRYAG 2 cut(s) 237, 1263
BstSLI GKGCMC 2 cut(s) 320, 1496
BstV1I GCAGC 9 cut(s) 16, 79, 119, 142, 1417, 1595, 1675, 1903, 2024
BstV2I GAAGAC 1 cut(s) 1605
BstX2I RGATCY 3 cut(s) 952, 1112, 1803
BstXI CCANNNNNNTGG 2 cut(s) 531, 1238
BstYI RGATCY 3 cut(s) 952, 1112, 1803
Bsu15I ATCGAT 1 cut(s) 1563
BsuI GTATCC 1 cut(s) 772
BsuRI GGCC 8 cut(s) 86, 144, 151, 318, 585, 636, 820, 1886
BsuTUI ATCGAT 1 cut(s) 1563
BtgI CCRYGG 2 cut(s) 580, 751
BtsCI GGATG 6 cut(s) 64, 295, 455, 914, 1063, 1247
BtsIMutI CAGTG 2 cut(s) 697, 1098
Cac8I GCNNGC 7 cut(s) 153, 359, 415, 818, 936, 940, 1086
CaiI CAGNNNCTG 2 cut(s) 10, 1972
CfoI GCGC 1 cut(s) 1341
Cfr10I RCCGGY 1 cut(s) 585
Cfr13I GGNCC 6 cut(s) 167, 316, 317, 377, 635, 819
ClaI ATCGAT 1 cut(s) 1563
CseI GACGC 2 cut(s) 350, 1315
Csp6I GTAC 7 cut(s) 72, 336, 676, 713, 1118, 1260, 1794
CspCI CAANNNNNGTGG 2 cut(s) 1410, 1445
CviQI GTAC 7 cut(s) 72, 336, 676, 713, 1118, 1260, 1794
DdeI CTNAG 7 cut(s) 221, 260, 662, 785, 1152, 1183, 1335
DpnI GATC 5 cut(s) 432, 954, 1114, 1236, 1805
DpnII GATC 5 cut(s) 430, 952, 1112, 1234, 1803
DraI TTTAAA 1 cut(s) 393
EaeI YGGCCR 2 cut(s) 142, 583
Eam1104I CTCTTC 2 cut(s) 810, 852
EarI CTCTTC 2 cut(s) 810, 852
Ecl136II GAGCTC 1 cut(s) 1418
Eco130I CCWWGG 3 cut(s) 189, 580, 751
Eco24I GRGCYC 3 cut(s) 320, 1420, 2044
Eco31I GGTCTC 1 cut(s) 1887
Eco47I GGWCC 2 cut(s) 167, 377
Eco47III AGCGCT 1 cut(s) 1340
Eco53kI GAGCTC 1 cut(s) 1418
Eco57I CTGAAG 1 cut(s) 1106
Eco88I CYCGRG 2 cut(s) 1457, 1676
EcoICRI GAGCTC 1 cut(s) 1418
EcoNI CCTNNNNNAGG 1 cut(s) 1818
EcoO109I RGGNCCY 3 cut(s) 316, 317, 377
EcoRI GAATTC 1 cut(s) 1136
EcoRII CCWGG 4 cut(s) 458, 1047, 1400, 1540
EcoT14I CCWWGG 3 cut(s) 189, 580, 751
EcoT38I GRGCYC 3 cut(s) 320, 1420, 2044
ErhI CCWWGG 3 cut(s) 189, 580, 751
FalI AAGNNNNNCTT 2 cut(s) 1068, 1100
FaqI GGGAC 2 cut(s) 153, 1869
FauNDI CATATG 2 cut(s) 76, 1004
FbaI TGATCA 1 cut(s) 430
FblI GTMKAC 1 cut(s) 364
Fnu4HI GCNGC 9 cut(s) 5, 93, 108, 156, 1406, 1584, 1689, 1917, 2013
FokI GGATG 6 cut(s) 71, 302, 442, 921, 1070, 1254
FriOI GRGCYC 3 cut(s) 320, 1420, 2044
Fsp4HI GCNGC 9 cut(s) 5, 93, 108, 156, 1406, 1584, 1689, 1917, 2013
FspBI CTAG 3 cut(s) 321, 1062, 2074
GlaI GCGC 1 cut(s) 1340
GluI GCNGC 9 cut(s) 5, 93, 108, 156, 1406, 1584, 1689, 1917, 2013
HaeII RGCGCY 1 cut(s) 1342
HaeIII GGCC 8 cut(s) 86, 144, 151, 318, 585, 636, 820, 1886
HapII CCGG 1 cut(s) 586
HgaI GACGC 2 cut(s) 350, 1315
HhaI GCGC 1 cut(s) 1341
Hin6I GCGC 1 cut(s) 1339
HinP1I GCGC 1 cut(s) 1339
HincII GTYRAC 2 cut(s) 591, 1518
HindII GTYRAC 2 cut(s) 591, 1518
HindIII AAGCTT 2 cut(s) 1077, 1922
HinfI GANTC 6 cut(s) 37, 424, 559, 965, 1331, 1641
HpaI GTTAAC 1 cut(s) 1518
HpaII CCGG 1 cut(s) 586
HphI GGTGA 5 cut(s) 74, 126, 634, 1187, 1331
Hpy166II GTNNAC 7 cut(s) 338, 365, 591, 1322, 1494, 1518, 1880
Hpy188I TCNGA 8 cut(s) 282, 345, 957, 1125, 1228, 1255, 1336, 2048
Hpy188III TCNNGA 6 cut(s) 428, 851, 1457, 1459, 1528, 1817
Hpy8I GTNNAC 7 cut(s) 338, 365, 591, 1322, 1494, 1518, 1880
Hpy99I CGWCG 1 cut(s) 1309
HpyAV CCTTC 8 cut(s) 124, 195, 368, 832, 835, 1179, 1678, 1814
HpyCH4III ACNGT 7 cut(s) 71, 275, 386, 692, 793, 1290, 1830
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 714, 1058, 1085
HpyF3I CTNAG 7 cut(s) 221, 260, 662, 785, 1152, 1183, 1335
HspAI GCGC 1 cut(s) 1339
Ksp22I TGATCA 1 cut(s) 430
KspAI GTTAAC 1 cut(s) 1518
Kzo9I GATC 5 cut(s) 430, 952, 1112, 1234, 1803
LguI GCTCTTC 1 cut(s) 852
LmnI GCTCC 2 cut(s) 1415, 1423
Lsp1109I GCAGC 9 cut(s) 16, 79, 119, 142, 1417, 1595, 1675, 1903, 2024
LweI GCATC 6 cut(s) 226, 921, 988, 1048, 1290, 1339
MaeI CTAG 3 cut(s) 321, 1062, 2074
MaeIII GTNAC 5 cut(s) 759, 1175, 1196, 1589, 2001
MalI GATC 5 cut(s) 432, 954, 1114, 1236, 1805
MbiI CCGCTC 1 cut(s) 202
MboI GATC 5 cut(s) 430, 952, 1112, 1234, 1803
MboII GAAGA 9 cut(s) 680, 797, 839, 890, 962, 1028, 1494, 1610, 2020
MfeI CAATTG 2 cut(s) 1326, 1940
MflI RGATCY 3 cut(s) 952, 1112, 1803
MhlI GDGCHC 5 cut(s) 320, 415, 1420, 1496, 2044
MlyI GAGTC 1 cut(s) 1325
MmeI TCCRAC 2 cut(s) 1196, 1410
MroXI GAANNNNTTC 3 cut(s) 23, 867, 2027
MseI TTAA 8 cut(s) 392, 926, 972, 1356, 1517, 1868, 1932, 1992
MslI CAYNNNNRTG 5 cut(s) 356, 418, 438, 723, 1563
MspA1I CMGCKG 1 cut(s) 92
MspI CCGG 1 cut(s) 586
MspR9I CCNGG 4 cut(s) 460, 1049, 1402, 1542
MssI GTTTAAAC 1 cut(s) 393
MunI CAATTG 2 cut(s) 1326, 1940
Mva1269I GAATGC 1 cut(s) 95
MvaI CCWGG 4 cut(s) 460, 1049, 1402, 1542
MwoI GCNNNNNNNGC 4 cut(s) 92, 714, 1058, 1085
NcoI CCATGG 2 cut(s) 580, 751
NdeI CATATG 2 cut(s) 76, 1004
NdeII GATC 5 cut(s) 430, 952, 1112, 1234, 1803
NlaIV GGNNCC 3 cut(s) 169, 318, 637
NmeAIII GCCGAG 1 cut(s) 1912
NmuCI GTSAC 2 cut(s) 1175, 1196
NspI RCATGY 3 cut(s) 361, 1590, 1606
OliI CACNNNNGTG 1 cut(s) 418
PaeI GCATGC 1 cut(s) 361
PaeR7I CTCGAG 1 cut(s) 1457
PasI CCCWGGG 1 cut(s) 1541
PciSI GCTCTTC 1 cut(s) 852
PcsI WCGNNNNNNNCGW 1 cut(s) 1464
PctI GAATGC 1 cut(s) 95
PdmI GAANNNNTTC 3 cut(s) 23, 867, 2027
PfeI GAWTC 5 cut(s) 37, 424, 559, 965, 1641
PkrI GCNGC 9 cut(s) 6, 94, 109, 157, 1407, 1585, 1690, 1918, 2014
PleI GAGTC 1 cut(s) 1325
PmeI GTTTAAAC 1 cut(s) 393
PpsI GAGTC 1 cut(s) 1325
PpuMI RGGWCCY 1 cut(s) 377
PshBI ATTAAT 2 cut(s) 1868, 1932
PsiI TTATAA 1 cut(s) 249
Psp124BI GAGCTC 1 cut(s) 1420
Psp5II RGGWCCY 1 cut(s) 377
Psp6I CCWGG 4 cut(s) 458, 1047, 1400, 1540
PspGI CCWGG 4 cut(s) 458, 1047, 1400, 1540
PspN4I GGNNCC 3 cut(s) 169, 318, 637
PspOMI GGGCCC 1 cut(s) 316
PspPI GGNCC 6 cut(s) 167, 316, 317, 377, 635, 819
PspPPI RGGWCCY 1 cut(s) 377
PstI CTGCAG 2 cut(s) 241, 1267
PstNI CAGNNNCTG 2 cut(s) 10, 1972
PsuI RGATCY 3 cut(s) 952, 1112, 1803
RsaI GTAC 7 cut(s) 73, 337, 677, 714, 1119, 1261, 1795
RsaNI GTAC 7 cut(s) 72, 336, 676, 713, 1118, 1260, 1794
RseI CAYNNNNRTG 5 cut(s) 356, 418, 438, 723, 1563
SacI GAGCTC 1 cut(s) 1420
SapI GCTCTTC 1 cut(s) 852
SaqAI TTAA 8 cut(s) 392, 926, 972, 1356, 1517, 1868, 1932, 1992
SatI GCNGC 9 cut(s) 5, 93, 108, 156, 1406, 1584, 1689, 1917, 2013
Sau3AI GATC 5 cut(s) 430, 952, 1112, 1234, 1803
Sau96I GGNCC 6 cut(s) 167, 316, 317, 377, 635, 819
SchI GAGTC 1 cut(s) 1325
ScrFI CCNGG 4 cut(s) 460, 1049, 1402, 1542
SduI GDGCHC 5 cut(s) 320, 415, 1420, 1496, 2044
SfaNI GCATC 6 cut(s) 226, 921, 988, 1048, 1290, 1339
SfcI CTRYAG 2 cut(s) 237, 1263
Sfr274I CTCGAG 1 cut(s) 1457
SinI GGWCC 2 cut(s) 167, 377
SlaI CTCGAG 1 cut(s) 1457
SmiMI CAYNNNNRTG 5 cut(s) 356, 418, 438, 723, 1563
SmlI CTYRAG 1 cut(s) 1457
SmoI CTYRAG 1 cut(s) 1457
SphI GCATGC 1 cut(s) 361
SsiI CCGC 2 cut(s) 90, 200
SspMI CTAG 3 cut(s) 321, 1062, 2074
SstI GAGCTC 1 cut(s) 1420
StyD4I CCNGG 4 cut(s) 458, 1047, 1400, 1540
StyI CCWWGG 3 cut(s) 189, 580, 751
TaaI ACNGT 7 cut(s) 71, 275, 386, 692, 793, 1290, 1830
TaqI TCGA 4 cut(s) 1458, 1473, 1563, 1832
TaqII GACCGA 1 cut(s) 155
TatI WGTACW 5 cut(s) 71, 335, 675, 1117, 1259
TfiI GAWTC 5 cut(s) 37, 424, 559, 965, 1641
Tru1I TTAA 8 cut(s) 392, 926, 972, 1356, 1517, 1868, 1932, 1992
Tru9I TTAA 8 cut(s) 392, 926, 972, 1356, 1517, 1868, 1932, 1992
TscAI CASTG 2 cut(s) 697, 1105
TseFI GTSAC 2 cut(s) 1175, 1196
TseI GCWGC 9 cut(s) 4, 92, 107, 155, 1405, 1583, 1688, 1916, 2012
Tsp45I GTSAC 2 cut(s) 1175, 1196
TspGWI ACGGA 1 cut(s) 1184
TspRI CASTG 2 cut(s) 697, 1105
VneI GTGCAC 1 cut(s) 1492
VpaK11BI GGWCC 2 cut(s) 167, 377
VspI ATTAAT 2 cut(s) 1868, 1932
XagI CCTNNNNNAGG 1 cut(s) 1818
XapI RAATTY 6 cut(s) 696, 1136, 1378, 1451, 1736, 1834
XceI RCATGY 3 cut(s) 361, 1590, 1606
XhoI CTCGAG 1 cut(s) 1457
XmiI GTMKAC 1 cut(s) 364
XmnI GAANNNNTTC 3 cut(s) 23, 867, 2027
XspI CTAG 3 cut(s) 321, 1062, 2074
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.