Rroxscaffold_2G00098710

Belongs to the terpene cyclase mutase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
20153847 .. 20158591
4745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00098710.1

Sequence Viewer

Length: 402 bp
ATGCTAAGAGAGAGAAACTTCACGCAAGAAATTCCTCCAGTAAGAATTGGGGAAGGTGATGACATTACATTTGATCAGGCCACAGCTGCCTATAGGAGGGCTGCTACCTTCTGGAATGCCTTGCAATCACCCCATGGTCATTGGCCTGCTGAAAATGCTGGCGTAAATTTTTTCTGTCCTCCCTTGATCAAATCCTCACGAGGCTCCACCTCTTCAAACTTAATGAACTCCCGATCAAGACCTTCTTCTTCACCTTCACCGACGGATGAAGCCACCGAAGCTTGTGGAATCTTGTTCGTCCGCTTCGTTTTCTGCAAAGCCCAATCCAGTTGCAAAGTGTCCGTGACTAATGAGAAGCCGAATGGTGCTAAAAAGCACAAAGTTGCAAGCTTGGGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

133

Amino Acids

14.52

Weight (kDa)

9.3

Isoelectric Point (pI)

65.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 301
AcsI RAATTY 2 cut(s) 30, 166
AfiI CCNNNNNNNGG 1 cut(s) 96
AgsI TTSAA 1 cut(s) 216
AluBI AGCT 3 cut(s) 86, 281, 390
AluI AGCT 3 cut(s) 86, 281, 390
AoxI GGCC 2 cut(s) 78, 143
ApeKI GCWGC 2 cut(s) 86, 101
ApoI RAATTY 2 cut(s) 30, 166
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
AsuHPI GGTGA 4 cut(s) 68, 120, 243, 249
BauI CACGAG 1 cut(s) 198
BbvI GCAGC 2 cut(s) 73, 88
BclI TGATCA 2 cut(s) 73, 186
BfmI CTRYAG 1 cut(s) 91
BisI GCNGC 2 cut(s) 87, 102
BlsI GCNGC 2 cut(s) 88, 103
BmiI GGNNCC 1 cut(s) 205
BpmI CTGGAG 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 96
Bse1I ACTGG 2 cut(s) 38, 327
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 96
BseNI ACTGG 2 cut(s) 38, 327
BseXI GCAGC 2 cut(s) 73, 88
BshFI GGCC 2 cut(s) 80, 145
BslI CCNNNNNNNGG 1 cut(s) 96
BsmI GAATGC 1 cut(s) 121
BsnI GGCC 2 cut(s) 80, 145
Bsp143I GATC 3 cut(s) 73, 186, 233
Bsp19I CCATGG 1 cut(s) 133
BspACI CCGC 1 cut(s) 301
BspANI GGCC 2 cut(s) 80, 145
BspLI GGNNCC 1 cut(s) 205
BsrI ACTGG 2 cut(s) 38, 327
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 3 cut(s) 73, 186, 233
BssSI CACGAG 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 133
Bst2BI CACGAG 1 cut(s) 198
Bst6I CTCTTC 1 cut(s) 217
BstC8I GCNNGC 3 cut(s) 147, 160, 388
BstDEI CTNAG 1 cut(s) 5
BstDSI CCRYGG 1 cut(s) 133
BstENI CCTNNNNNAGG 1 cut(s) 94
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 3 cut(s) 76, 189, 236
BstMBI GATC 3 cut(s) 73, 186, 233
BstMWI GCNNNNNNNGC 3 cut(s) 86, 155, 278
BstSFI CTRYAG 1 cut(s) 91
BstV1I GCAGC 2 cut(s) 73, 88
BsuRI GGCC 2 cut(s) 80, 145
BtgI CCRYGG 1 cut(s) 133
BtsCI GGATG 1 cut(s) 271
Cac8I GCNNGC 3 cut(s) 147, 160, 388
CviAII CATG 1 cut(s) 134
DdeI CTNAG 1 cut(s) 5
DpnI GATC 3 cut(s) 75, 188, 235
DpnII GATC 3 cut(s) 73, 186, 233
Eam1104I CTCTTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 133
EcoNI CCTNNNNNAGG 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 1 cut(s) 137
FaiI YATR 2 cut(s) 93, 135
FalI AAGNNNNNCTT 2 cut(s) 229, 261
FatI CATG 1 cut(s) 133
FbaI TGATCA 2 cut(s) 73, 186
Fnu4HI GCNGC 2 cut(s) 87, 102
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 2 cut(s) 87, 102
GluI GCNGC 2 cut(s) 87, 102
GsuI CTGGAG 1 cut(s) 21
HaeIII GGCC 2 cut(s) 80, 145
Hin1II CATG 1 cut(s) 137
HindIII AAGCTT 2 cut(s) 279, 388
HinfI GANTC 1 cut(s) 288
HphI GGTGA 4 cut(s) 68, 120, 243, 249
Hpy188III TCNNGA 4 cut(s) 112, 198, 231, 237
Hpy99I CGWCG 1 cut(s) 265
HpyAV CCTTC 4 cut(s) 47, 118, 252, 264
HpyCH4V TGCA 4 cut(s) 124, 315, 333, 386
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 155, 278
HpyF3I CTNAG 1 cut(s) 5
Hsp92II CATG 1 cut(s) 137
Ksp22I TGATCA 2 cut(s) 73, 186
Kzo9I GATC 3 cut(s) 73, 186, 233
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 6 cut(s) 51, 62, 97, 144, 159, 340
Lsp1109I GCAGC 2 cut(s) 73, 88
MaeIII GTNAC 1 cut(s) 343
MalI GATC 3 cut(s) 75, 188, 235
MboI GATC 3 cut(s) 73, 186, 233
MboII GAAGA 3 cut(s) 204, 237, 240
MluCI AATT 4 cut(s) 30, 45, 166, 397
MnlI CCTC 6 cut(s) 45, 90, 189, 194, 205, 220
MseI TTAA 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 86
Mva1269I GAATGC 1 cut(s) 121
MwoI GCNNNNNNNGC 3 cut(s) 86, 155, 278
NcoI CCATGG 1 cut(s) 133
NdeII GATC 3 cut(s) 73, 186, 233
NlaIII CATG 1 cut(s) 137
NlaIV GGNNCC 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 343
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PctI GAATGC 1 cut(s) 121
PfeI GAWTC 1 cut(s) 288
PkrI GCNGC 2 cut(s) 88, 103
PspN4I GGNNCC 1 cut(s) 205
PvuII CAGCTG 1 cut(s) 86
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 2 cut(s) 87, 102
Sau3AI GATC 3 cut(s) 73, 186, 233
SetI ASST 8 cut(s) 58, 88, 110, 212, 244, 256, 283, 392
SfcI CTRYAG 1 cut(s) 91
Sse9I AATT 4 cut(s) 30, 45, 166, 397
SsiI CCGC 1 cut(s) 301
StyI CCWWGG 1 cut(s) 133
TasI AATT 4 cut(s) 30, 45, 166, 397
TfiI GAWTC 1 cut(s) 288
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 2 cut(s) 86, 101
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 2 cut(s) 239, 282
TspGWI ACGGA 2 cut(s) 278, 331
XagI CCTNNNNNAGG 1 cut(s) 94
XapI RAATTY 2 cut(s) 30, 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.