Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000173

Physical Location & Seq

Genomic Coordinates Reverse (-)

65914210 .. 65916274

Gene Structure 2065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030686

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGGTATTTTAAATTTTGCCAATCCAATTCAACACAGACTCAGTCCGTCTCATACTTCATTTGCACACCATATATACTCACAGTATGAACCAGATGTCGTTTGGGTGACCAAAGAGACAGAAATTCGGGTTAGTCTCTCTCAGGTGCTTCGGCAAGTAAAGCATTGGATTGGAGAAGTTGATTCCGATTATGATAATGTATATGGATTAAAGGGTCCAAGATCCAGATACCCAAGAGCCTGGAAAGCAATAAGGAGATTGGGACATTTTGAAATTAAGGGTCTGTCAAATGTGAAAGAGGAGGTTTATGGGGCCCTTGATTCTTTCATTTTTACGGTGTATATTACGGGACATCTTAACCGTGTATTCCCCGAGGAGCATCGGAAAGAAATTCTGCGTTACCTATACTATCATCAGAATGACGACGGTGGCTGGGGACTACACATCGAAGGTCACAGCACCATGTTCAGCATAGCTCTCAGCTATATTTGTATGTGTATTCTCGGAGAAGGACCTGATGATGGGGGCCAAGACAATGCTTGTCCAAGAGCTAGAAAGTGGATTCTTGATCATGATGGTGTCACACACATGCCTTCTTGGGGAAAGACTTGGCTTTCGATACTTGGTTTGTTTGATTGGTCTGGAAGCAACCCTATGCCCCCAGAGTTTTGGATTCTTCCTTCATTTCTTCCTATGCATCCAGTTTACGGTTTTTCTGTCAAGACCAGCAGCTTTGGTTTGACCAGTAGCTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

253

Amino Acids

28.95

Weight (kDa)

6.38

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQHop_cyclase_N	PF13249	124 - 234	6.9e-21	Squalene-hopene cyclase N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca	FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica	MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica	Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis	pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis	RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata	RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora	Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii	Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa	Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha	Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana	Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	216
AcsI	RAATTY	3 cut(s)	13, 123, 390
AfiI	CCNNNNNNNGG	3 cut(s)	521, 599, 707
AgsI	TTSAA	2 cut(s)	32, 272
AjnI	CCWGG	1 cut(s)	239
AluBI	AGCT	5 cut(s)	476, 483, 551, 732, 750
AluI	AGCT	5 cut(s)	476, 483, 551, 732, 750
Alw26I	GTCTC	3 cut(s)	54, 110, 140
AlwI	GGATC	1 cut(s)	216
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	2 cut(s)	312, 526
ApaI	GGGCCC	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	729
ApoI	RAATTY	3 cut(s)	13, 123, 390
ArsI	GACNNNNNNTTYG	2 cut(s)	598, 630
AspS9I	GGNCC	5 cut(s)	215, 312, 313, 512, 526
AsuHPI	GGTGA	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	2 cut(s)	215, 512
BaeGI	GKGCMC	1 cut(s)	316
BanII	GRGCYC	1 cut(s)	316
BbvI	GCAGC	1 cut(s)	741
BccI	CCATC	2 cut(s)	515, 569
BciT130I	CCWGG	1 cut(s)	241
BclI	TGATCA	1 cut(s)	568
BcoDI	GTCTC	3 cut(s)	54, 110, 140
BfaI	CTAG	1 cut(s)	552
BisI	GCNGC	1 cut(s)	730
BlsI	GCNGC	1 cut(s)	731
Bme1390I	CCNGG	1 cut(s)	241
Bme18I	GGWCC	2 cut(s)	215, 512
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	5 cut(s)	215, 312, 313, 512, 526
BmiI	GGNNCC	4 cut(s)	216, 313, 314, 527
BmrFI	CCNGG	1 cut(s)	241
BmsI	GCATC	2 cut(s)	388, 706
BsaJI	CCNNGG	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	3 cut(s)	521, 599, 707
Bse1I	ACTGG	2 cut(s)	701, 744
BseBI	CCWGG	1 cut(s)	241
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	1 cut(s)	697
BseLI	CCNNNNNNNGG	3 cut(s)	521, 599, 707
BseMII	CTCAG	3 cut(s)	55, 155, 493
BseNI	ACTGG	2 cut(s)	701, 744
BseRI	GAGGAG	2 cut(s)	314, 389
BseSI	GKGCMC	1 cut(s)	316
BseXI	GCAGC	1 cut(s)	741
BseYI	CCCAGC	1 cut(s)	432
BshFI	GGCC	2 cut(s)	314, 528
BsiHKCI	CYCGRG	1 cut(s)	371
BslFI	GGGAC	3 cut(s)	276, 363, 450
BslI	CCNNNNNNNGG	3 cut(s)	521, 599, 707
BsmAI	GTCTC	3 cut(s)	54, 110, 140
BsmBI	CGTCTC	1 cut(s)	54
BsmFI	GGGAC	3 cut(s)	276, 363, 450
BsnI	GGCC	2 cut(s)	314, 528
BsoBI	CYCGRG	1 cut(s)	371
Bsp120I	GGGCCC	1 cut(s)	312
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	2 cut(s)	221, 568
BspANI	GGCC	2 cut(s)	314, 528
BspCNI	CTCAG	3 cut(s)	54, 154, 492
BspHI	TCATGA	1 cut(s)	571
BspLI	GGNNCC	4 cut(s)	216, 313, 314, 527
BspPI	GGATC	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	701, 744
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	2 cut(s)	221, 568
Bst2UI	CCWGG	1 cut(s)	241
Bst4CI	ACNGT	5 cut(s)	84, 337, 362, 428, 710
BstDEI	CTNAG	3 cut(s)	41, 141, 479
BstEII	GGTNACC	1 cut(s)	106
BstF5I	GGATG	1 cut(s)	697
BstKTI	GATC	2 cut(s)	224, 571
BstMAI	GTCTC	3 cut(s)	54, 110, 140
BstMBI	GATC	2 cut(s)	221, 568
BstMWI	GCNNNNNNNGC	2 cut(s)	160, 245
BstNI	CCWGG	1 cut(s)	241
BstNSI	RCATGY	1 cut(s)	592
BstPI	GGTNACC	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	239
BstSLI	GKGCMC	1 cut(s)	316
BstV1I	GCAGC	1 cut(s)	741
BstX2I	RGATCY	1 cut(s)	221
BstXI	CCANNNNNNTGG	2 cut(s)	240, 669
BstYI	RGATCY	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	314, 528
BtsCI	GGATG	1 cut(s)	697
CciI	TCATGA	1 cut(s)	571
Cfr13I	GGNCC	5 cut(s)	215, 312, 313, 512, 526
CviAII	CATG	3 cut(s)	463, 572, 589
DdeI	CTNAG	3 cut(s)	41, 141, 479
DpnI	GATC	2 cut(s)	223, 570
DpnII	GATC	2 cut(s)	221, 568
DraI	TTTAAA	1 cut(s)	12
Eco24I	GRGCYC	1 cut(s)	316
Eco47I	GGWCC	2 cut(s)	215, 512
Eco88I	CYCGRG	1 cut(s)	371
Eco91I	GGTNACC	1 cut(s)	106
EcoO109I	RGGNCCY	3 cut(s)	312, 313, 512
EcoO65I	GGTNACC	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	239
EcoT22I	ATGCAT	1 cut(s)	699
EcoT38I	GRGCYC	1 cut(s)	316
Esp3I	CGTCTC	1 cut(s)	54
FaeI	CATG	3 cut(s)	466, 575, 592
FaqI	GGGAC	3 cut(s)	276, 363, 450
FatI	CATG	3 cut(s)	462, 571, 588
FbaI	TGATCA	1 cut(s)	568
Fnu4HI	GCNGC	1 cut(s)	730
FokI	GGATG	1 cut(s)	684
FriOI	GRGCYC	1 cut(s)	316
Fsp4HI	GCNGC	1 cut(s)	730
FspBI	CTAG	1 cut(s)	552
GluI	GCNGC	1 cut(s)	730
GsaI	CCCAGC	1 cut(s)	436
HaeIII	GGCC	2 cut(s)	314, 528
Hin1II	CATG	3 cut(s)	466, 575, 592
HinfI	GANTC	5 cut(s)	39, 182, 320, 562, 673
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	706
Hpy188I	TCNGA	4 cut(s)	187, 384, 417, 506
Hpy188III	TCNNGA	5 cut(s)	225, 566, 572, 642, 721
Hpy8I	GTNNAC	1 cut(s)	706
Hpy99I	CGWCG	1 cut(s)	428
HpyAV	CCTTC	4 cut(s)	443, 503, 603, 690
HpyCH4III	ACNGT	5 cut(s)	84, 337, 362, 428, 710
HpyCH4V	TGCA	2 cut(s)	65, 697
HpyF10VI	GCNNNNNNNGC	2 cut(s)	160, 245
HpyF3I	CTNAG	3 cut(s)	41, 141, 479
Hsp92II	CATG	3 cut(s)	466, 575, 592
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	2 cut(s)	221, 568
LmnI	GCTCC	1 cut(s)	376
Lsp1109I	GCAGC	1 cut(s)	741
LweI	GCATC	2 cut(s)	388, 706
MaeI	CTAG	1 cut(s)	552
MaeIII	GTNAC	4 cut(s)	106, 398, 452, 580
MalI	GATC	2 cut(s)	223, 570
MboI	GATC	2 cut(s)	221, 568
MboII	GAAGA	2 cut(s)	668, 680
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	5 cut(s)	13, 27, 123, 273, 390
MlyI	GAGTC	1 cut(s)	33
MnlI	CCTC	3 cut(s)	292, 295, 367
Mph1103I	ATGCAT	1 cut(s)	699
MseI	TTAA	4 cut(s)	11, 209, 276, 357
MslI	CAYNNNNRTG	3 cut(s)	417, 576, 587
MspR9I	CCNGG	1 cut(s)	241
MvaI	CCWGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	2 cut(s)	160, 245
NdeII	GATC	2 cut(s)	221, 568
NlaIII	CATG	3 cut(s)	466, 575, 592
NlaIV	GGNNCC	4 cut(s)	216, 313, 314, 527
NmuCI	GTSAC	3 cut(s)	106, 452, 580
NsiI	ATGCAT	1 cut(s)	699
NspI	RCATGY	1 cut(s)	592
PagI	TCATGA	1 cut(s)	571
PfeI	GAWTC	4 cut(s)	182, 320, 562, 673
PflFI	GACNNNGTC	1 cut(s)	42
PkrI	GCNGC	1 cut(s)	731
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
PpuMI	RGGWCCY	1 cut(s)	512
Psp5II	RGGWCCY	1 cut(s)	512
Psp6I	CCWGG	1 cut(s)	239
PspEI	GGTNACC	1 cut(s)	106
PspFI	CCCAGC	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	239
PspN4I	GGNNCC	4 cut(s)	216, 313, 314, 527
PspOMI	GGGCCC	1 cut(s)	312
PspPI	GGNCC	5 cut(s)	215, 312, 313, 512, 526
PspPPI	RGGWCCY	1 cut(s)	512
PsuI	RGATCY	1 cut(s)	221
PsyI	GACNNNGTC	1 cut(s)	42
RseI	CAYNNNNRTG	3 cut(s)	417, 576, 587
SaqAI	TTAA	4 cut(s)	11, 209, 276, 357
SatI	GCNGC	1 cut(s)	730
Sau3AI	GATC	2 cut(s)	221, 568
Sau96I	GGNCC	5 cut(s)	215, 312, 313, 512, 526
SchI	GAGTC	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	241
SduI	GDGCHC	1 cut(s)	316
SfaNI	GCATC	2 cut(s)	388, 706
SinI	GGWCC	2 cut(s)	215, 512
SmiMI	CAYNNNNRTG	3 cut(s)	417, 576, 587
Sse9I	AATT	5 cut(s)	13, 27, 123, 273, 390
SspMI	CTAG	1 cut(s)	552
StyD4I	CCNGG	1 cut(s)	239
TaaI	ACNGT	5 cut(s)	84, 337, 362, 428, 710
TaqI	TCGA	2 cut(s)	447, 617
TasI	AATT	5 cut(s)	13, 27, 123, 273, 390
TfiI	GAWTC	4 cut(s)	182, 320, 562, 673
Tru1I	TTAA	4 cut(s)	11, 209, 276, 357
Tru9I	TTAA	4 cut(s)	11, 209, 276, 357
TseFI	GTSAC	3 cut(s)	106, 452, 580
TseI	GCWGC	1 cut(s)	729
Tsp45I	GTSAC	3 cut(s)	106, 452, 580
TspDTI	ATGAA	4 cut(s)	48, 102, 316, 672
TspGWI	ACGGA	1 cut(s)	36
Tth111I	GACNNNGTC	1 cut(s)	42
VpaK11BI	GGWCC	2 cut(s)	215, 512
XapI	RAATTY	3 cut(s)	13, 123, 390
XceI	RCATGY	1 cut(s)	592
XcmI	CCANNNNNNNNNTGG	1 cut(s)	99
XspI	CTAG	1 cut(s)	552
Zsp2I	ATGCAT	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.