Rw2G038000

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000173
Physical Location & Seq
Reverse (-)
62736487 .. 62743248
6762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G038000.1

Sequence Viewer

Length: 1032 bp
ATGTGGAGGATTGAGTATGGAAACGGTGCAAATGACCCTCATTCATTCAGCACAAAAAACTTAAATGGGAGGCAGACATGGAAGTTTGACCCAAATGCAGGCACACCAGAAGAGCGAGCAGAGGTTGAAGCCGCTCATGAGAATTACTATCAAAATTGGTTCAAGATCCAGCCCAGTAGTGATCTCCTTTGGCGTTTTCAGATGCTAAGAGAGAGAAACTTCAAGCAAGAAATTCCTCCAGTACGAATTGGGGAAGGTGATGACATTACATTTGATCAAGCCACAGCTGCCTATAGGAGGAATGCTACCTTCTGGAATGCCTTGCAATCACCCCATGGTCATTGGCCTGCTAAAATGCTGCGCTACTCTTACAATCATCAGAATGAACATGGTGGGTGGGGATTGCACATTGCAGGGCCTAGTATGATGTTCACCACATGTCTCAACTACTGTATGATGGCCCGGAAATGGATTCTTGACGGTGGTGGTGCAAAATATTCTGCTTCATGGGGAAAGACCTGGATGGCTATACTTGGTGTTGATGATTGGGAAGGAAGCAACCCTATACCCCCGGAGTTTTGGACTTACCCCACTCTGCTTCCTTTTCATCCATCAAAGATGTTGTGCTATTGTAGGTTAACTTACCTACCCATGTCCTACTTTTATGCAAAAAAATTTGTTGGCCCAATCACTCCTTTGTGGAGTAAAGTGCGCCATCATTGTGCAAAGGAAGATAACTACTATCCTCATGGAAGGGTACAACGTTTTATGTGGGACACTCTTTACCATGTTTGTGAGCCTATTCTTGCTTGGTGGCCCTTTAAGAAGATTAGAGACAATGCTATTCAATTTACCATTGACCAAATCCATTATGAAGATGAGAACAGTCGCTACACTACCATTGGATGGATCGAAAAGCTTGATCCTTCTATTAAAGAAGCATTTGACGTGGCATATGACAATGTATGTGCATTTCATTTTGCCCAGAAGTCAGCAGAGAAAACTGTTGAGAATATGAAGGCAAGTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

343

Amino Acids

40.32

Weight (kDa)

7.22

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_N PF13249 117 - 291 6.4e-21 Squalene-hopene cyclase N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 906
AccBSI CCGCTC 1 cut(s) 134
AciI CCGC 1 cut(s) 132
AclI AACGTT 1 cut(s) 763
AclWI GGATC 3 cut(s) 160, 917, 917
AcsI RAATTY 2 cut(s) 231, 674
AfaI GTAC 2 cut(s) 243, 759
AfiI CCNNNNNNNGG 4 cut(s) 98, 297, 468, 906
AflIII ACRYGT 1 cut(s) 437
AgsI TTSAA 4 cut(s) 128, 163, 223, 848
AjiI CACGTC 1 cut(s) 949
AjnI CCWGG 1 cut(s) 518
AluBI AGCT 2 cut(s) 287, 919
AluI AGCT 2 cut(s) 287, 919
Alw26I GTCTC 2 cut(s) 446, 828
AlwI GGATC 3 cut(s) 160, 917, 917
AoxI GGCC 5 cut(s) 344, 416, 459, 682, 815
ApeKI GCWGC 2 cut(s) 287, 358
ApoI RAATTY 2 cut(s) 231, 674
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AspLEI GCGC 2 cut(s) 363, 714
AspS9I GGNCC 4 cut(s) 416, 460, 683, 816
AsuC2I CCSGG 2 cut(s) 463, 572
AsuHPI GGTGA 3 cut(s) 269, 321, 424
BbvI GCAGC 2 cut(s) 274, 345
BccI CCATC 5 cut(s) 451, 517, 619, 723, 900
BciT130I CCWGG 1 cut(s) 520
BclI TGATCA 1 cut(s) 274
BcnI CCSGG 2 cut(s) 463, 572
BcoDI GTCTC 2 cut(s) 446, 828
BfaI CTAG 1 cut(s) 420
BfmI CTRYAG 1 cut(s) 292
BisI GCNGC 3 cut(s) 132, 288, 359
BlsI GCNGC 3 cut(s) 133, 289, 360
Bme1390I CCNGG 3 cut(s) 463, 520, 572
BmgBI CACGTC 1 cut(s) 949
BmgT120I GGNCC 4 cut(s) 416, 460, 683, 816
BmrFI CCNGG 3 cut(s) 463, 520, 572
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 192
BmuI ACTGGG 1 cut(s) 168
BpmI CTGGAG 1 cut(s) 222
BpuMI CCSGG 2 cut(s) 463, 572
BsaJI CCNNGG 2 cut(s) 334, 570
Bsc4I CCNNNNNNNGG 4 cut(s) 98, 297, 468, 906
Bse1I ACTGG 2 cut(s) 174, 239
Bse3DI GCAATG 1 cut(s) 408
BseBI CCWGG 1 cut(s) 520
BseDI CCNNGG 2 cut(s) 334, 570
BseGI GGATG 3 cut(s) 528, 607, 911
BseLI CCNNNNNNNGG 4 cut(s) 98, 297, 468, 906
BseMI GCAATG 1 cut(s) 408
BseNI ACTGG 2 cut(s) 174, 239
BseXI GCAGC 2 cut(s) 274, 345
BshFI GGCC 5 cut(s) 346, 418, 461, 684, 817
BsiSI CCGG 2 cut(s) 463, 572
BslFI GGGAC 1 cut(s) 788
BslI CCNNNNNNNGG 4 cut(s) 98, 297, 468, 906
BsmAI GTCTC 2 cut(s) 446, 828
BsmFI GGGAC 1 cut(s) 788
BsmI GAATGC 2 cut(s) 307, 322
BsnI GGCC 5 cut(s) 346, 418, 461, 684, 817
Bsp143I GATC 5 cut(s) 165, 181, 274, 909, 922
Bsp19I CCATGG 1 cut(s) 334
BspACI CCGC 1 cut(s) 132
BspANI GGCC 5 cut(s) 346, 418, 461, 684, 817
BspHI TCATGA 1 cut(s) 136
BspPI GGATC 3 cut(s) 160, 917, 917
BspQI GCTCTTC 1 cut(s) 105
BsrBI CCGCTC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 408
BsrI ACTGG 2 cut(s) 174, 239
BssECI CCNNGG 2 cut(s) 334, 570
BssMI GATC 5 cut(s) 165, 181, 274, 909, 922
BssT1I CCWWGG 1 cut(s) 334
Bst2UI CCWGG 1 cut(s) 520
Bst4CI ACNGT 5 cut(s) 26, 452, 482, 887, 1006
Bst6I CTCTTC 1 cut(s) 105
BstC8I GCNNGC 3 cut(s) 100, 117, 348
BstDEI CTNAG 1 cut(s) 206
BstDSI CCRYGG 1 cut(s) 334
BstENI CCTNNNNNAGG 1 cut(s) 295
BstF5I GGATG 3 cut(s) 528, 607, 911
BstHHI GCGC 2 cut(s) 363, 714
BstKTI GATC 5 cut(s) 168, 184, 277, 912, 925
BstMAI GTCTC 2 cut(s) 446, 828
BstMBI GATC 5 cut(s) 165, 181, 274, 909, 922
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNI CCWGG 1 cut(s) 520
BstNSI RCATGY 1 cut(s) 441
BstSCI CCNGG 3 cut(s) 461, 518, 570
BstSFI CTRYAG 1 cut(s) 292
BstV1I GCAGC 2 cut(s) 274, 345
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BsuRI GGCC 5 cut(s) 346, 418, 461, 684, 817
BtgI CCRYGG 1 cut(s) 334
BtrI CACGTC 1 cut(s) 949
BtsCI GGATG 3 cut(s) 528, 607, 911
Cac8I GCNNGC 3 cut(s) 100, 117, 348
CciI TCATGA 1 cut(s) 136
CfoI GCGC 2 cut(s) 363, 714
Cfr13I GGNCC 4 cut(s) 416, 460, 683, 816
Csp6I GTAC 2 cut(s) 242, 758
CviAII CATG 9 cut(s) 78, 137, 335, 389, 438, 507, 652, 749, 788
CviQI GTAC 2 cut(s) 242, 758
DdeI CTNAG 1 cut(s) 206
DpnI GATC 5 cut(s) 167, 183, 276, 911, 924
DpnII GATC 5 cut(s) 165, 181, 274, 909, 922
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 334
EcoNI CCTNNNNNAGG 1 cut(s) 295
EcoO109I RGGNCCY 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 518
EcoT14I CCWWGG 1 cut(s) 334
ErhI CCWWGG 1 cut(s) 334
FaeI CATG 9 cut(s) 81, 140, 338, 392, 441, 510, 655, 752, 791
FaqI GGGAC 1 cut(s) 788
FatI CATG 9 cut(s) 77, 136, 334, 388, 437, 506, 651, 748, 787
FauNDI CATATG 1 cut(s) 955
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 3 cut(s) 132, 288, 359
FokI GGATG 3 cut(s) 535, 594, 918
Fsp4HI GCNGC 3 cut(s) 132, 288, 359
FspBI CTAG 1 cut(s) 420
GlaI GCGC 2 cut(s) 362, 713
GluI GCNGC 3 cut(s) 132, 288, 359
GsuI CTGGAG 1 cut(s) 222
HaeIII GGCC 5 cut(s) 346, 418, 461, 684, 817
HapII CCGG 2 cut(s) 463, 572
HhaI GCGC 2 cut(s) 363, 714
Hin1II CATG 9 cut(s) 81, 140, 338, 392, 441, 510, 655, 752, 791
Hin6I GCGC 2 cut(s) 361, 712
HinP1I GCGC 2 cut(s) 361, 712
HincII GTYRAC 1 cut(s) 639
HindII GTYRAC 1 cut(s) 639
HindIII AAGCTT 1 cut(s) 917
HinfI GANTC 1 cut(s) 472
HpaI GTTAAC 1 cut(s) 639
HpaII CCGG 2 cut(s) 463, 572
HphI GGTGA 3 cut(s) 269, 321, 424
Hpy166II GTNNAC 2 cut(s) 432, 639
Hpy188I TCNGA 2 cut(s) 201, 381
Hpy188III TCNNGA 4 cut(s) 137, 163, 313, 476
Hpy8I GTNNAC 2 cut(s) 432, 639
HpyAV CCTTC 6 cut(s) 248, 319, 545, 747, 936, 1012
HpyCH4III ACNGT 5 cut(s) 26, 452, 482, 887, 1006
HpyCH4IV ACGT 2 cut(s) 763, 948
HpyCH4V TGCA 9 cut(s) 29, 98, 325, 406, 413, 491, 668, 725, 971
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 1 cut(s) 206
HpySE526I ACGT 2 cut(s) 763, 948
Hsp92II CATG 9 cut(s) 81, 140, 338, 392, 441, 510, 655, 752, 791
HspAI GCGC 2 cut(s) 361, 712
Ksp22I TGATCA 1 cut(s) 274
KspAI GTTAAC 1 cut(s) 639
Kzo9I GATC 5 cut(s) 165, 181, 274, 909, 922
LguI GCTCTTC 1 cut(s) 105
Lsp1109I GCAGC 2 cut(s) 274, 345
LweI GCATC 1 cut(s) 192
MaeI CTAG 1 cut(s) 420
MaeII ACGT 2 cut(s) 763, 948
MalI GATC 5 cut(s) 167, 183, 276, 911, 924
MbiI CCGCTC 1 cut(s) 134
MboI GATC 5 cut(s) 165, 181, 274, 909, 922
MboII GAAGA 4 cut(s) 122, 743, 838, 887
MflI RGATCY 1 cut(s) 165
MluCI AATT 6 cut(s) 142, 154, 231, 246, 674, 848
MnlI CCTC 6 cut(s) 48, 63, 115, 246, 291, 756
MseI TTAA 4 cut(s) 62, 638, 822, 933
MslI CAYNNNNRTG 3 cut(s) 381, 720, 792
MspA1I CMGCKG 1 cut(s) 287
MspI CCGG 2 cut(s) 463, 572
MspR9I CCNGG 3 cut(s) 463, 520, 572
Mva1269I GAATGC 2 cut(s) 307, 322
MvaI CCWGG 1 cut(s) 520
MwoI GCNNNNNNNGC 1 cut(s) 287
NciI CCSGG 2 cut(s) 463, 572
NcoI CCATGG 1 cut(s) 334
NdeI CATATG 1 cut(s) 955
NdeII GATC 5 cut(s) 165, 181, 274, 909, 922
NlaIII CATG 9 cut(s) 81, 140, 338, 392, 441, 510, 655, 752, 791
NspI RCATGY 1 cut(s) 441
PagI TCATGA 1 cut(s) 136
PciI ACATGT 1 cut(s) 437
PciSI GCTCTTC 1 cut(s) 105
PctI GAATGC 2 cut(s) 307, 322
PfeI GAWTC 1 cut(s) 472
PflMI CCANNNNNTGG 1 cut(s) 906
PkrI GCNGC 3 cut(s) 133, 289, 360
PscI ACATGT 1 cut(s) 437
Psp1406I AACGTT 1 cut(s) 763
Psp6I CCWGG 1 cut(s) 518
PspGI CCWGG 1 cut(s) 518
PspPI GGNCC 4 cut(s) 416, 460, 683, 816
PsrI GAACNNNNNNTAC 2 cut(s) 875, 907
PsuI RGATCY 1 cut(s) 165
PvuII CAGCTG 1 cut(s) 287
RsaI GTAC 2 cut(s) 243, 759
RsaNI GTAC 2 cut(s) 242, 758
RseI CAYNNNNRTG 3 cut(s) 381, 720, 792
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 4 cut(s) 62, 638, 822, 933
SatI GCNGC 3 cut(s) 132, 288, 359
Sau3AI GATC 5 cut(s) 165, 181, 274, 909, 922
Sau96I GGNCC 4 cut(s) 416, 460, 683, 816
ScrFI CCNGG 3 cut(s) 463, 520, 572
SfaNI GCATC 1 cut(s) 192
SfcI CTRYAG 1 cut(s) 292
SmiMI CAYNNNNRTG 3 cut(s) 381, 720, 792
Sse9I AATT 6 cut(s) 142, 154, 231, 246, 674, 848
SsiI CCGC 1 cut(s) 132
SspI AATATT 1 cut(s) 497
SspMI CTAG 1 cut(s) 420
StyD4I CCNGG 3 cut(s) 461, 518, 570
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 5 cut(s) 26, 452, 482, 887, 1006
TaiI ACGT 2 cut(s) 766, 951
TaqI TCGA 1 cut(s) 912
TasI AATT 6 cut(s) 142, 154, 231, 246, 674, 848
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 1 cut(s) 472
Tru1I TTAA 4 cut(s) 62, 638, 822, 933
Tru9I TTAA 4 cut(s) 62, 638, 822, 933
TseI GCWGC 2 cut(s) 287, 358
TspDTI ATGAA 7 cut(s) 33, 399, 495, 596, 888, 965, 1031
Van91I CCANNNNNTGG 1 cut(s) 906
XagI CCTNNNNNAGG 1 cut(s) 295
XapI RAATTY 2 cut(s) 231, 674
XceI RCATGY 1 cut(s) 441
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.