Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000173

Physical Location & Seq

Genomic Coordinates Forward (+)

52048435 .. 52049580

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0408400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAACAAAATAATCTACCCGTTATAGCCAAGAAACTATGGAGCATAGTACGTGTGGCTTTCTTCATGCTAAGAAAAGGCATCTCAAAGCGAAAGCTCCTGCTAGACCTCAACATGATGATGAAGCGCGGCAAGCTCGCCAGCAAAGCCCTGAGCAACCTCATGTTCCACCACCATCACCACGGCTCCTCCGCCGCTTCTTCAGCCGCCGCCGCCGCCCAGCGCGAGTATGAGTTCAGCTGCAGCAACACCCCCAACTACCGCTTCCATCTCATGAGTGGCAAGCGCCGCGGTCACCACAGCAACCACAGCCACTTCTTTGCGTGCGCCCACGCGCCTGCCACTCAAGAAGATGATGTGGCGGCGGTCAATGCCGTTAAGGCTGTGCTGGAGATTCTGAATAATCATGAGGTGGTGACAGCGGTGGAGGCGTCCCCGATGCCGACTCCATTTCAGACGCCTTCACTTCCAGGGTTCGGGCGAAGCCCCATGGTCCGCCAGCTGAGGATAACGGACTCACCGTTTCCGTTGAGGGAGGCCGACGAGGACAGCCACGTGGACAAAGCGGCGGAGGAGTTTATTGAGAGGTTTTACAAGAATTTGAGACAGCAGAAGCAAAATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

208

Amino Acids

23.44

Weight (kDa)

9.69

Isoelectric Point (pI)

54.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF761	PF05553	185 - 207	7.8e-07	Cotton fibre expressed protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca	FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica	MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica	Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis	pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis	RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata	RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora	Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii	Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa	Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha	Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana	Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	129, 225, 291, 335
AcsI	RAATTY	1 cut(s)	598
AcuI	CTGAAG	1 cut(s)	186
AcvI	CACGTG	1 cut(s)	556
AcyI	GRCGYC	2 cut(s)	431, 458
AfaI	GTAC	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	476
AflIII	ACRYGT	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	469
AjuI	GAANNNNNNNTTGG	2 cut(s)	248, 280
AluBI	AGCT	4 cut(s)	97, 136, 240, 502
AluI	AGCT	4 cut(s)	97, 136, 240, 502
Alw26I	GTCTC	1 cut(s)	598
AoxI	GGCC	1 cut(s)	537
ApeKI	GCWGC	2 cut(s)	240, 243
ApoI	RAATTY	1 cut(s)	598
AspLEI	GCGC	5 cut(s)	129, 225, 288, 329, 337
AspS9I	GGNCC	1 cut(s)	493
AsuHPI	GGTGA	4 cut(s)	170, 287, 427, 510
AvaII	GGWCC	1 cut(s)	493
BbrPI	CACGTG	1 cut(s)	556
BbvCI	CCTCAGC	1 cut(s)	503
BbvI	GCAGC	2 cut(s)	227, 255
BccI	CCATC	2 cut(s)	183, 276
BceAI	ACGGC	2 cut(s)	199, 359
BciT130I	CCWGG	1 cut(s)	471
BcoDI	GTCTC	1 cut(s)	598
BfaI	CTAG	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	241
BfoI	RGCGCY	1 cut(s)	289
BglI	GCCNNNNNGGC	1 cut(s)	380
Bme1390I	CCNGG	1 cut(s)	471
Bme18I	GGWCC	1 cut(s)	493
BmgT120I	GGNCC	1 cut(s)	493
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	471
BmsI	GCATC	2 cut(s)	90, 429
BpmI	CTGGAG	1 cut(s)	410
Bpu10I	CCTNAGC	2 cut(s)	152, 503
BpuEI	CTTGAG	1 cut(s)	330
BsaAI	YACGTR	2 cut(s)	53, 556
BsaHI	GRCGYC	2 cut(s)	431, 458
BsaJI	CCNNGG	4 cut(s)	181, 289, 470, 489
BsaXI	ACNNNNNCTCC	4 cut(s)	170, 173, 200, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	476
BseBI	CCWGG	1 cut(s)	471
BseDI	CCNNGG	4 cut(s)	181, 289, 470, 489
BseLI	CCNNNNNNNGG	1 cut(s)	476
BseMII	CTCAG	2 cut(s)	143, 494
BseRI	GAGGAG	2 cut(s)	178, 587
BseXI	GCAGC	2 cut(s)	227, 255
BseYI	CCCAGC	1 cut(s)	219
Bsh1236I	CGCG	4 cut(s)	129, 225, 291, 335
BshFI	GGCC	1 cut(s)	539
BslFI	GGGAC	1 cut(s)	418
BslI	CCNNNNNNNGG	1 cut(s)	476
BsmAI	GTCTC	1 cut(s)	598
BsmFI	GGGAC	1 cut(s)	418
BsnI	GGCC	1 cut(s)	539
Bsp19I	CCATGG	1 cut(s)	489
BspANI	GGCC	1 cut(s)	539
BspCNI	CTCAG	2 cut(s)	144, 495
BspFNI	CGCG	4 cut(s)	129, 225, 291, 335
BspHI	TCATGA	2 cut(s)	273, 406
BspLI	GGNNCC	1 cut(s)	187
BspMAI	CTGCAG	1 cut(s)	245
BssECI	CCNNGG	4 cut(s)	181, 289, 470, 489
BssNI	GRCGYC	2 cut(s)	431, 458
BssT1I	CCWWGG	1 cut(s)	489
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	1 cut(s)	522
BstACI	GRCGYC	2 cut(s)	431, 458
BstBAI	YACGTR	2 cut(s)	53, 556
BstC8I	GCNNGC	7 cut(s)	134, 138, 142, 284, 325, 339, 500
BstDEI	CTNAG	3 cut(s)	71, 152, 503
BstDSI	CCRYGG	3 cut(s)	181, 289, 489
BstEII	GGTNACC	1 cut(s)	293
BstFNI	CGCG	4 cut(s)	129, 225, 291, 335
BstH2I	RGCGCY	1 cut(s)	289
BstHHI	GCGC	5 cut(s)	129, 225, 288, 329, 337
BstMAI	GTCTC	1 cut(s)	598
BstNI	CCWGG	1 cut(s)	471
BstPI	GGTNACC	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	469
BstSFI	CTRYAG	1 cut(s)	241
BstUI	CGCG	4 cut(s)	129, 225, 291, 335
BstV1I	GCAGC	2 cut(s)	227, 255
BsuRI	GGCC	1 cut(s)	539
BtgI	CCRYGG	3 cut(s)	181, 289, 489
Cac8I	GCNNGC	7 cut(s)	134, 138, 142, 284, 325, 339, 500
CciI	TCATGA	2 cut(s)	273, 406
CfoI	GCGC	5 cut(s)	129, 225, 288, 329, 337
Cfr13I	GGNCC	1 cut(s)	493
Cfr42I	CCGCGG	1 cut(s)	292
CseI	GACGC	2 cut(s)	420, 466
Csp6I	GTAC	1 cut(s)	50
CviAII	CATG	7 cut(s)	67, 115, 163, 274, 407, 490, 624
CviQI	GTAC	1 cut(s)	50
DdeI	CTNAG	3 cut(s)	71, 152, 503
EciI	GGCGGA	3 cut(s)	181, 485, 584
Eco130I	CCWWGG	1 cut(s)	489
Eco47I	GGWCC	1 cut(s)	493
Eco57I	CTGAAG	1 cut(s)	186
Eco72I	CACGTG	1 cut(s)	556
Eco91I	GGTNACC	1 cut(s)	293
EcoO65I	GGTNACC	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	489
EcoT22I	ATGCAT	1 cut(s)	625
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	7 cut(s)	70, 118, 166, 277, 410, 493, 627
FaqI	GGGAC	1 cut(s)	418
FatI	CATG	7 cut(s)	66, 114, 162, 273, 406, 489, 623
FspBI	CTAG	1 cut(s)	104
GlaI	GCGC	5 cut(s)	128, 224, 287, 328, 336
GsaI	CCCAGC	1 cut(s)	223
GsuI	CTGGAG	1 cut(s)	410
HaeII	RGCGCY	1 cut(s)	289
HaeIII	GGCC	1 cut(s)	539
HgaI	GACGC	2 cut(s)	420, 466
HhaI	GCGC	5 cut(s)	129, 225, 288, 329, 337
Hin1I	GRCGYC	2 cut(s)	431, 458
Hin1II	CATG	7 cut(s)	70, 118, 166, 277, 410, 493, 627
Hin6I	GCGC	5 cut(s)	127, 223, 286, 327, 335
HinP1I	GCGC	5 cut(s)	127, 223, 286, 327, 335
HinfI	GANTC	3 cut(s)	394, 445, 515
HphI	GGTGA	4 cut(s)	170, 287, 427, 510
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	2 cut(s)	399, 456
Hpy188III	TCNNGA	3 cut(s)	274, 347, 407
Hpy8I	GTNNAC	1 cut(s)	559
Hpy99I	CGWCG	1 cut(s)	545
HpyAV	CCTTC	1 cut(s)	471
HpyCH4III	ACNGT	1 cut(s)	522
HpyCH4IV	ACGT	2 cut(s)	52, 555
HpyCH4V	TGCA	2 cut(s)	243, 623
HpyF3I	CTNAG	3 cut(s)	71, 152, 503
HpySE526I	ACGT	2 cut(s)	52, 555
Hsp92I	GRCGYC	2 cut(s)	431, 458
Hsp92II	CATG	7 cut(s)	70, 118, 166, 277, 410, 493, 627
HspAI	GCGC	5 cut(s)	127, 223, 286, 327, 335
KspI	CCGCGG	1 cut(s)	292
LmnI	GCTCC	3 cut(s)	42, 102, 191
LpnPI	CCDG	9 cut(s)	113, 154, 164, 233, 351, 374, 456, 483, 512
Lsp1109I	GCAGC	2 cut(s)	227, 255
LweI	GCATC	2 cut(s)	90, 429
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	2 cut(s)	52, 555
MaeIII	GTNAC	2 cut(s)	293, 415
MboII	GAAGA	3 cut(s)	55, 192, 362
MluCI	AATT	1 cut(s)	598
MlyI	GAGTC	2 cut(s)	439, 509
Mph1103I	ATGCAT	1 cut(s)	625
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	4 cut(s)	240, 291, 422, 502
MspR9I	CCNGG	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	471
MvnI	CGCG	4 cut(s)	129, 225, 291, 335
NcoI	CCATGG	1 cut(s)	489
NlaIII	CATG	7 cut(s)	70, 118, 166, 277, 410, 493, 627
NlaIV	GGNNCC	1 cut(s)	187
NmuCI	GTSAC	2 cut(s)	293, 415
NsiI	ATGCAT	1 cut(s)	625
PagI	TCATGA	2 cut(s)	273, 406
PcsI	WCGNNNNNNNCGW	1 cut(s)	518
PfeI	GAWTC	1 cut(s)	394
PleI	GAGTC	2 cut(s)	439, 509
PmaCI	CACGTG	1 cut(s)	556
PmlI	CACGTG	1 cut(s)	556
PpsI	GAGTC	2 cut(s)	439, 509
Ppu21I	YACGTR	2 cut(s)	53, 556
Psp6I	CCWGG	1 cut(s)	469
PspCI	CACGTG	1 cut(s)	556
PspEI	GGTNACC	1 cut(s)	293
PspFI	CCCAGC	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	493
PstI	CTGCAG	1 cut(s)	245
PvuII	CAGCTG	2 cut(s)	240, 502
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
RseI	CAYNNNNRTG	1 cut(s)	119
SacII	CCGCGG	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	378
Sau96I	GGNCC	1 cut(s)	493
SchI	GAGTC	2 cut(s)	439, 509
ScrFI	CCNGG	1 cut(s)	471
SfaNI	GCATC	2 cut(s)	90, 429
SfcI	CTRYAG	1 cut(s)	241
Sfr303I	CCGCGG	1 cut(s)	292
SgrBI	CCGCGG	1 cut(s)	292
SinI	GGWCC	1 cut(s)	493
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	345
SmoI	CTYRAG	1 cut(s)	345
Sse9I	AATT	1 cut(s)	598
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	1 cut(s)	469
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	1 cut(s)	522
TaiI	ACGT	2 cut(s)	55, 558
TasI	AATT	1 cut(s)	598
TauI	GCSGC	9 cut(s)	132, 197, 209, 212, 215, 218, 291, 365, 569
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TseFI	GTSAC	2 cut(s)	293, 415
TseI	GCWGC	2 cut(s)	240, 243
Tsp45I	GTSAC	2 cut(s)	293, 415
TspDTI	ATGAA	2 cut(s)	55, 137
TspGWI	ACGGA	2 cut(s)	516, 527
VpaK11BI	GGWCC	1 cut(s)	493
XapI	RAATTY	1 cut(s)	598
XcmI	CCANNNNNNNNNTGG	1 cut(s)	275
XspI	CTAG	1 cut(s)	104
Zsp2I	ATGCAT	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.