Rmu_sc0008411.1_g000029

Belongs to the terpene cyclase mutase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008411.1
Physical Location & Seq
Reverse (-)
126977 .. 127806
830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008411.1_g000029.1.cds

Sequence Viewer

Length: 321 bp
atgatgcgtattcttggagaaggcactgagggtggtcgagataatgcatgtgcaagggcccggaaatggattcttgacggtggtgatgcaaaatattctgcttcatggggaaagacctggatggcggaagataactactatcctcagggaagggtacaacgttttgtgtgggacactctttaccatgtttgtgagcctattcttgcttggtggccctttaagaagatcagagacaatgctattcaatttaccattgaccaaatccattatgaagatgagaacagtcgctacattaccattagatgtatcgaaaaggtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

106

Amino Acids

12.57

Weight (kDa)

6.72

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 125
AclI AACGTT 1 cut(s) 160
AfaI GTAC 1 cut(s) 156
AfiI CCNNNNNNNGG 1 cut(s) 66
AgsI TTSAA 1 cut(s) 245
AjnI CCWGG 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 225
AoxI GGCC 2 cut(s) 57, 212
ApaI GGGCCC 1 cut(s) 61
AspS9I GGNCC 3 cut(s) 57, 58, 213
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 1 cut(s) 95
AxyI CCTNAGG 1 cut(s) 144
BaeGI GKGCMC 1 cut(s) 61
BanII GRGCYC 1 cut(s) 61
BccI CCATC 1 cut(s) 115
BciT130I CCWGG 1 cut(s) 118
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 225
Bme1390I CCNGG 2 cut(s) 61, 118
BmgT120I GGNCC 3 cut(s) 57, 58, 213
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 2 cut(s) 61, 118
BmsI GCATC 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 61
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse21I CCTNAGG 1 cut(s) 144
BseBI CCWGG 1 cut(s) 118
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMII CTCAG 2 cut(s) 18, 158
BseSI GKGCMC 1 cut(s) 61
BshFI GGCC 2 cut(s) 59, 214
BsiSI CCGG 1 cut(s) 61
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 66
BsmAI GTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 2 cut(s) 59, 214
Bsp120I GGGCCC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 1 cut(s) 225
BspACI CCGC 1 cut(s) 125
BspANI GGCC 2 cut(s) 59, 214
BspCNI CTCAG 2 cut(s) 19, 157
BspLI GGNNCC 1 cut(s) 59
BssMI GATC 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 2 cut(s) 80, 284
BstDEI CTNAG 2 cut(s) 27, 144
BstF5I GGATG 1 cut(s) 126
BstKTI GATC 1 cut(s) 228
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 1 cut(s) 225
BstNI CCWGG 1 cut(s) 118
BstNSI RCATGY 1 cut(s) 51
BstSCI CCNGG 2 cut(s) 59, 116
BstSLI GKGCMC 1 cut(s) 61
Bsu36I CCTNAGG 1 cut(s) 144
BsuRI GGCC 2 cut(s) 59, 214
BtsCI GGATG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 24
Cfr13I GGNCC 3 cut(s) 57, 58, 213
Csp6I GTAC 1 cut(s) 155
CviAII CATG 3 cut(s) 48, 105, 185
CviJI RGCY 3 cut(s) 59, 196, 214
CviKI_1 RGCY 3 cut(s) 59, 196, 214
CviQI GTAC 1 cut(s) 155
DdeI CTNAG 2 cut(s) 27, 144
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
EciI GGCGGA 1 cut(s) 140
Eco24I GRGCYC 1 cut(s) 61
Eco81I CCTNAGG 1 cut(s) 144
EcoO109I RGGNCCY 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 116
EcoT22I ATGCAT 1 cut(s) 49
EcoT38I GRGCYC 1 cut(s) 61
FaeI CATG 3 cut(s) 51, 108, 188
FaiI YATR 4 cut(s) 49, 106, 186, 270
FaqI GGGAC 1 cut(s) 185
FatI CATG 3 cut(s) 47, 104, 184
FokI GGATG 1 cut(s) 133
FriOI GRGCYC 1 cut(s) 61
HaeIII GGCC 2 cut(s) 59, 214
HapII CCGG 1 cut(s) 61
Hin1II CATG 3 cut(s) 51, 108, 188
HinfI GANTC 1 cut(s) 70
HpaII CCGG 1 cut(s) 61
HphI GGTGA 1 cut(s) 95
Hpy188I TCNGA 1 cut(s) 230
Hpy188III TCNNGA 2 cut(s) 38, 74
HpyAV CCTTC 2 cut(s) 14, 144
HpyCH4III ACNGT 2 cut(s) 80, 284
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 3 cut(s) 47, 53, 89
HpyF3I CTNAG 2 cut(s) 27, 144
HpySE526I ACGT 1 cut(s) 160
Hsp92II CATG 3 cut(s) 51, 108, 188
Kzo9I GATC 1 cut(s) 225
LpnPI CCDG 4 cut(s) 74, 103, 130, 131
LweI GCATC 1 cut(s) 76
MaeII ACGT 1 cut(s) 160
MalI GATC 1 cut(s) 227
MboI GATC 1 cut(s) 225
MboII GAAGA 3 cut(s) 140, 235, 284
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 1 cut(s) 245
MnlI CCTC 2 cut(s) 22, 153
Mph1103I ATGCAT 1 cut(s) 49
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 1 cut(s) 189
MspI CCGG 1 cut(s) 61
MspR9I CCNGG 2 cut(s) 61, 118
MvaI CCWGG 1 cut(s) 118
NciI CCSGG 1 cut(s) 61
NdeII GATC 1 cut(s) 225
NlaIII CATG 3 cut(s) 51, 108, 188
NlaIV GGNNCC 1 cut(s) 59
NsiI ATGCAT 1 cut(s) 49
NspI RCATGY 1 cut(s) 51
PfeI GAWTC 1 cut(s) 70
Psp1406I AACGTT 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 59
PspOMI GGGCCC 1 cut(s) 57
PspPI GGNCC 3 cut(s) 57, 58, 213
PsrI GAACNNNNNNTAC 2 cut(s) 272, 304
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
RseI CAYNNNNRTG 1 cut(s) 189
SaqAI TTAA 1 cut(s) 219
Sau3AI GATC 1 cut(s) 225
Sau96I GGNCC 3 cut(s) 57, 58, 213
ScrFI CCNGG 2 cut(s) 61, 118
SduI GDGCHC 1 cut(s) 61
SetI ASST 3 cut(s) 119, 163, 318
SfaNI GCATC 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 189
Sse9I AATT 1 cut(s) 245
SsiI CCGC 1 cut(s) 125
SspI AATATT 1 cut(s) 95
StyD4I CCNGG 2 cut(s) 59, 116
TaaI ACNGT 2 cut(s) 80, 284
TaiI ACGT 1 cut(s) 163
TaqI TCGA 2 cut(s) 37, 309
TasI AATT 1 cut(s) 245
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 1 cut(s) 31
TspDTI ATGAA 2 cut(s) 93, 285
TspRI CASTG 1 cut(s) 31
XceI RCATGY 1 cut(s) 51
Zsp2I ATGCAT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.