Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000173

Physical Location & Seq

Genomic Coordinates Reverse (-)

7358291 .. 7363826

Gene Structure 5536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1089600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGTGGAGGCTGAAGATTGGGGACGGTGCAGATGGCCCATATTTGTCCAGCACAAACAACTTTCTGGGGAGGCAGACATGGCCGTTTGATCCTCATGCAGGTACTCTTCAAGAGCGAGCTGAGGTTGAAGAGGCTCGCCAAAATTACCTCAAAAACCGATTTCAGGTCAAGCCTAGTAGCGATTTCCTCTGGAAAATGCAGTTTCTAAGAGAGAAAAATTCCAAACAAGCGATTCCTCCATTGAAGATCAACGAGGGCGATGAAGTGAAACATGAAATTGCAACCGCTGCAATGAAGAGGGCTGTCCATTTTAATTCAGCCTTGCAATCAAGCCACGGACATTGGCCTGCTGAAAATTCTGGCCCATTGTTTTACCTTCTTTCTCTGGTCATGTGTCTGTACATTACTGGTCATCTTAGTGTTGTATTCTCTGTGGAACATCTCAAAGAAATCAAGCGTTACATATACAACCATCAGAGCAAAAATGGTGGGTGGGGATTACACATAGAGAGCCCCAGCAACATGTTTTATGGAGGTGAAGAGAATGCCATGGCTAGGGGAAGAAAGTGGATTCTTGACCATGGGGGTGTAACCAATATACTTTCTTGCGTAAAAGCTTGGCTTTCGATACTTGGTGTTTATGACTGGTCTGGATGTAACCCAATACCTCCGGAGTATTGGATGCTTCCTTCTTTTCTACCCATGCATCCAGGTTTAGCTACTGCTGGAAAAACTTATTACAATTGTCCGGCTATGCGCAACGGGGTTAATTTTCTACTGGCAAGCCAAGGAGATGACAGTGGATGGGGAGAGAGTTACCTTTCATGTCTACGCAAGGCAGAAAGAGACCCTACTCCTCTCCACCGTGCTGCAAAGCTGTTAATCAATTCTCAGATGGAGGATGGTGGATTCCCTCAGCAGGTTGCGTACCGCCTAGTTTTCAGAAGAAAGTTAAATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009506 GO:0009987 GO:0010263 GO:0010683 GO:0010685 GO:0010686 GO:0012505 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0022622 GO:0030054 GO:0031559 GO:0032501 GO:0032502 GO:0034074 GO:0034075 GO:0042299 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0051746 GO:0055044 GO:0071704 GO:0080003 GO:0080011 GO:0099402 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

321

Amino Acids

36.32

Weight (kDa)

9.06

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQHop_cyclase_N	PF13249	99 - 236	1.4e-16	Squalene-hopene cyclase N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca	FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica	MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica	Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis	pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis	RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata	RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora	Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii	Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa	Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha	Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana	Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	758
Acc36I	ACCTGC	2 cut(s)	89, 910
AccI	GTMKAC	1 cut(s)	829
AccIII	TCCGGA	1 cut(s)	670
AciI	CCGC	2 cut(s)	285, 931
AclWI	GGATC	1 cut(s)	83
AcoI	YGGCCR	1 cut(s)	80
AcsI	RAATTY	2 cut(s)	217, 355
AcuI	CTGAAG	1 cut(s)	32
AfaI	GTAC	3 cut(s)	103, 401, 929
AfiI	CCNNNNNNNGG	4 cut(s)	98, 163, 555, 919
AflIII	ACRYGT	1 cut(s)	522
AgsI	TTSAA	3 cut(s)	110, 128, 244
AjnI	CCWGG	1 cut(s)	709
AluBI	AGCT	4 cut(s)	119, 617, 719, 877
AluI	AGCT	4 cut(s)	119, 617, 719, 877
Alw26I	GTCTC	1 cut(s)	840
AlwI	GGATC	1 cut(s)	83
Aor13HI	TCCGGA	1 cut(s)	670
AoxI	GGCC	4 cut(s)	34, 80, 344, 361
ApeKI	GCWGC	2 cut(s)	287, 869
ApoI	RAATTY	2 cut(s)	217, 355
AspLEI	GCGC	1 cut(s)	759
AspS9I	GGNCC	2 cut(s)	35, 362
AsuHPI	GGTGA	1 cut(s)	548
BanII	GRGCYC	1 cut(s)	515
BbvCI	CCTCAGC	2 cut(s)	120, 915
BbvI	GCAGC	2 cut(s)	274, 856
BccI	CCATC	5 cut(s)	26, 480, 798, 889, 896
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	711
BcoDI	GTCTC	1 cut(s)	840
BfaI	CTAG	3 cut(s)	174, 555, 935
BfuAI	ACCTGC	2 cut(s)	89, 910
BisI	GCNGC	2 cut(s)	288, 870
BlsI	GCNGC	2 cut(s)	289, 871
Bme1390I	CCNGG	1 cut(s)	711
BmgT120I	GGNCC	2 cut(s)	35, 362
BmrFI	CCNGG	1 cut(s)	711
BmsI	GCATC	2 cut(s)	672, 715
Bpu10I	CCTNAGC	2 cut(s)	120, 915
BsaI	GGTCTC	1 cut(s)	840
BsaJI	CCNNGG	4 cut(s)	334, 549, 580, 787
BsaWI	WCCGGW	1 cut(s)	670
Bsc4I	CCNNNNNNNGG	4 cut(s)	98, 163, 555, 919
Bse1I	ACTGG	3 cut(s)	412, 650, 783
Bse3DI	GCAATG	1 cut(s)	297
BseAI	TCCGGA	1 cut(s)	670
BseBI	CCWGG	1 cut(s)	711
BseDI	CCNNGG	4 cut(s)	334, 549, 580, 787
BseGI	GGATG	5 cut(s)	659, 687, 706, 809, 907
BseLI	CCNNNNNNNGG	4 cut(s)	98, 163, 555, 919
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	3 cut(s)	111, 905, 929
BseNI	ACTGG	3 cut(s)	412, 650, 783
BseRI	GAGGAG	1 cut(s)	846
BseXI	GCAGC	2 cut(s)	274, 856
BseYI	CCCAGC	1 cut(s)	515
BsgI	GTGCAG	1 cut(s)	48
BshFI	GGCC	4 cut(s)	36, 82, 346, 363
BsiSI	CCGG	2 cut(s)	671, 749
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	4 cut(s)	98, 163, 555, 919
BsmAI	GTCTC	1 cut(s)	840
BsmFI	GGGAC	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	550
BsnI	GGCC	4 cut(s)	36, 82, 346, 363
Bso31I	GGTCTC	1 cut(s)	840
Bsp1286I	GDGCHC	1 cut(s)	515
Bsp13I	TCCGGA	1 cut(s)	670
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	2 cut(s)	88, 246
Bsp19I	CCATGG	2 cut(s)	549, 580
BspACI	CCGC	2 cut(s)	285, 931
BspANI	GGCC	4 cut(s)	36, 82, 346, 363
BspCNI	CTCAG	3 cut(s)	112, 904, 928
BspEI	TCCGGA	1 cut(s)	670
BspMI	ACCTGC	2 cut(s)	89, 910
BspPI	GGATC	1 cut(s)	83
BspTNI	GGTCTC	1 cut(s)	840
BsrDI	GCAATG	1 cut(s)	297
BsrGI	TGTACA	1 cut(s)	399
BsrI	ACTGG	3 cut(s)	412, 650, 783
BssECI	CCNNGG	4 cut(s)	334, 549, 580, 787
BssMI	GATC	2 cut(s)	88, 246
BssT1I	CCWWGG	3 cut(s)	549, 580, 787
Bst2UI	CCWGG	1 cut(s)	711
Bst4CI	ACNGT	3 cut(s)	26, 800, 866
Bst6I	CTCTTC	4 cut(s)	111, 123, 290, 534
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstAUI	TGTACA	1 cut(s)	399
BstC8I	GCNNGC	4 cut(s)	117, 136, 348, 784
BstDEI	CTNAG	5 cut(s)	120, 206, 416, 891, 915
BstDSI	CCRYGG	3 cut(s)	334, 549, 580
BstENI	CCTNNNNNAGG	1 cut(s)	96
BstF5I	GGATG	5 cut(s)	659, 687, 706, 809, 907
BstHHI	GCGC	1 cut(s)	759
BstKTI	GATC	2 cut(s)	91, 249
BstMAI	GTCTC	1 cut(s)	840
BstMBI	GATC	2 cut(s)	88, 246
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 287
BstNI	CCWGG	1 cut(s)	711
BstNSI	RCATGY	1 cut(s)	526
BstSCI	CCNGG	1 cut(s)	709
BstV1I	GCAGC	2 cut(s)	274, 856
BsuRI	GGCC	4 cut(s)	36, 82, 346, 363
BtgI	CCRYGG	3 cut(s)	334, 549, 580
BtgZI	GCGATG	1 cut(s)	273
BtsCI	GGATG	5 cut(s)	659, 687, 706, 809, 907
BtsIMutI	CAGTG	1 cut(s)	805
BveI	ACCTGC	2 cut(s)	89, 910
Cac8I	GCNNGC	4 cut(s)	117, 136, 348, 784
CfoI	GCGC	1 cut(s)	759
Cfr13I	GGNCC	2 cut(s)	35, 362
Csp6I	GTAC	3 cut(s)	102, 400, 928
CspCI	CAANNNNNGTGG	4 cut(s)	323, 358, 469, 504
CviAII	CATG	9 cut(s)	78, 95, 272, 391, 523, 550, 581, 703, 825
CviQI	GTAC	3 cut(s)	102, 400, 928
DdeI	CTNAG	5 cut(s)	120, 206, 416, 891, 915
DpnI	GATC	2 cut(s)	90, 248
DpnII	GATC	2 cut(s)	88, 246
EaeI	YGGCCR	1 cut(s)	80
Eam1104I	CTCTTC	4 cut(s)	111, 123, 290, 534
EarI	CTCTTC	4 cut(s)	111, 123, 290, 534
Eco130I	CCWWGG	3 cut(s)	549, 580, 787
Eco24I	GRGCYC	1 cut(s)	515
Eco31I	GGTCTC	1 cut(s)	840
Eco57I	CTGAAG	1 cut(s)	32
EcoNI	CCTNNNNNAGG	1 cut(s)	96
EcoRII	CCWGG	1 cut(s)	709
EcoT14I	CCWWGG	3 cut(s)	549, 580, 787
EcoT22I	ATGCAT	1 cut(s)	708
EcoT38I	GRGCYC	1 cut(s)	515
ErhI	CCWWGG	3 cut(s)	549, 580, 787
FaeI	CATG	9 cut(s)	81, 98, 275, 394, 526, 553, 584, 706, 828
FalI	AAGNNNNNCTT	2 cut(s)	606, 638
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	9 cut(s)	77, 94, 271, 390, 522, 549, 580, 702, 824
FblI	GTMKAC	1 cut(s)	829
Fnu4HI	GCNGC	2 cut(s)	288, 870
FokI	GGATG	5 cut(s)	666, 693, 694, 816, 914
FriOI	GRGCYC	1 cut(s)	515
Fsp4HI	GCNGC	2 cut(s)	288, 870
FspBI	CTAG	3 cut(s)	174, 555, 935
FspI	TGCGCA	1 cut(s)	758
GlaI	GCGC	1 cut(s)	758
GluI	GCNGC	2 cut(s)	288, 870
GsaI	CCCAGC	1 cut(s)	519
HaeIII	GGCC	4 cut(s)	36, 82, 346, 363
HapII	CCGG	2 cut(s)	671, 749
HhaI	GCGC	1 cut(s)	759
Hin1II	CATG	9 cut(s)	81, 98, 275, 394, 526, 553, 584, 706, 828
Hin6I	GCGC	1 cut(s)	757
HinP1I	GCGC	1 cut(s)	757
HindIII	AAGCTT	1 cut(s)	615
HinfI	GANTC	3 cut(s)	232, 571, 909
HpaII	CCGG	2 cut(s)	671, 749
HphI	GGTGA	1 cut(s)	548
Hpy166II	GTNNAC	1 cut(s)	830
Hpy188I	TCNGA	3 cut(s)	477, 894, 944
Hpy188III	TCNNGA	5 cut(s)	110, 190, 575, 651, 671
Hpy8I	GTNNAC	1 cut(s)	830
HpyAV	CCTTC	2 cut(s)	386, 699
HpyCH4III	ACNGT	3 cut(s)	26, 800, 866
HpyCH4V	TGCA	8 cut(s)	29, 98, 199, 281, 290, 325, 706, 872
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 287
HpyF3I	CTNAG	5 cut(s)	120, 206, 416, 891, 915
Hsp92II	CATG	9 cut(s)	81, 98, 275, 394, 526, 553, 584, 706, 828
HspAI	GCGC	1 cut(s)	757
Kpn2I	TCCGGA	1 cut(s)	670
Kzo9I	GATC	2 cut(s)	88, 246
Lsp1109I	GCAGC	2 cut(s)	274, 856
LweI	GCATC	2 cut(s)	672, 715
MaeI	CTAG	3 cut(s)	174, 555, 935
MaeIII	GTNAC	4 cut(s)	458, 589, 656, 815
MalI	GATC	2 cut(s)	90, 248
MboI	GATC	2 cut(s)	88, 246
MboII	GAAGA	8 cut(s)	25, 98, 140, 256, 307, 551, 573, 957
MfeI	CAATTG	1 cut(s)	742
MhlI	GDGCHC	1 cut(s)	515
MluCI	AATT	8 cut(s)	142, 217, 276, 313, 355, 742, 769, 886
Mph1103I	ATGCAT	1 cut(s)	708
MroI	TCCGGA	1 cut(s)	670
MseI	TTAA	4 cut(s)	312, 768, 881, 953
MslI	CAYNNNNRTG	2 cut(s)	417, 585
MspA1I	CMGCKG	1 cut(s)	287
MspI	CCGG	2 cut(s)	671, 749
MspR9I	CCNGG	1 cut(s)	711
MunI	CAATTG	1 cut(s)	742
Mva1269I	GAATGC	1 cut(s)	550
MvaI	CCWGG	1 cut(s)	711
MwoI	GCNNNNNNNGC	2 cut(s)	79, 287
NcoI	CCATGG	2 cut(s)	549, 580
NdeII	GATC	2 cut(s)	88, 246
NlaIII	CATG	9 cut(s)	81, 98, 275, 394, 526, 553, 584, 706, 828
NsbI	TGCGCA	1 cut(s)	758
NsiI	ATGCAT	1 cut(s)	708
NspI	RCATGY	1 cut(s)	526
PciI	ACATGT	1 cut(s)	522
PctI	GAATGC	1 cut(s)	550
PfeI	GAWTC	3 cut(s)	232, 571, 909
PkrI	GCNGC	2 cut(s)	289, 871
PscI	ACATGT	1 cut(s)	522
Psp6I	CCWGG	1 cut(s)	709
PspFI	CCCAGC	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	709
PspPI	GGNCC	2 cut(s)	35, 362
RsaI	GTAC	3 cut(s)	103, 401, 929
RsaNI	GTAC	3 cut(s)	102, 400, 928
RseI	CAYNNNNRTG	2 cut(s)	417, 585
SaqAI	TTAA	4 cut(s)	312, 768, 881, 953
SatI	GCNGC	2 cut(s)	288, 870
Sau3AI	GATC	2 cut(s)	88, 246
Sau96I	GGNCC	2 cut(s)	35, 362
ScrFI	CCNGG	1 cut(s)	711
SduI	GDGCHC	1 cut(s)	515
SfaNI	GCATC	2 cut(s)	672, 715
SmiMI	CAYNNNNRTG	2 cut(s)	417, 585
Sse9I	AATT	8 cut(s)	142, 217, 276, 313, 355, 742, 769, 886
SsiI	CCGC	2 cut(s)	285, 931
SspMI	CTAG	3 cut(s)	174, 555, 935
StyD4I	CCNGG	1 cut(s)	709
StyI	CCWWGG	3 cut(s)	549, 580, 787
TaaI	ACNGT	3 cut(s)	26, 800, 866
TaqI	TCGA	1 cut(s)	626
TasI	AATT	8 cut(s)	142, 217, 276, 313, 355, 742, 769, 886
TatI	WGTACW	1 cut(s)	399
TfiI	GAWTC	3 cut(s)	232, 571, 909
Tru1I	TTAA	4 cut(s)	312, 768, 881, 953
Tru9I	TTAA	4 cut(s)	312, 768, 881, 953
TscAI	CASTG	1 cut(s)	805
TseI	GCWGC	2 cut(s)	287, 869
TspDTI	ATGAA	4 cut(s)	276, 288, 308, 813
TspGWI	ACGGA	1 cut(s)	351
TspRI	CASTG	1 cut(s)	805
XagI	CCTNNNNNAGG	1 cut(s)	96
XapI	RAATTY	2 cut(s)	217, 355
XceI	RCATGY	1 cut(s)	526
XmiI	GTMKAC	1 cut(s)	829
XspI	CTAG	3 cut(s)	174, 555, 935
Zsp2I	ATGCAT	1 cut(s)	708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.