Rh2DG487800

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000173
Physical Location & Seq
Forward (+)
70427555 .. 70442793
15239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG487800.1

Sequence Viewer

Length: 564 bp
ATGTGGAAGCTTAGGTTTGGAGACGAAGGTGCAAATAATGACCCTTACTTGTTCAGCACAAACAACTTCCATGGGAGGCAAACATGGGAGTTCGACCCGGCTGCCGGCACACCTGAAGAGCGAGCAGAGGTGGAAGAAGTTCGGCTAAGTTTTTACAACAATCGTCACCGAGTCCAGGCTTGTAGTGACCTCCTCTGTCGAATGCAGCTTCTGGGAGAGAAAAAGTTCAAACAAAAGATTCCCCAAGTCAAGGTGGAGGATGGTGAGGACTGTACATATGAAAAGGCCACCGCTGCATTTAGAAGGGCAGCTACCTTCTACTCTGCCTTACAATCACCTCACGGCCATTGGCCTGCTGAAAATGCCGGTCCCATGTTTTATATTCCTCCCTTGGTTCAAATCGTGACCATATCGAACAAGATGTATACTATCCATCCTCACAACTGTGAACTCTTAGATAATCTGAATTATTTCTATTACAGAGGCATTGAACTGTTTGGTGGCTTGATCAATATCTATGAACTTACGACTCCAGGTACTAATTATTATAAACATGTACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

187

Amino Acids

21.71

Weight (kDa)

6.16

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 549
AccI GTMKAC 1 cut(s) 425
AciI CCGC 1 cut(s) 291
AcoI YGGCCR 1 cut(s) 343
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 3 cut(s) 274, 538, 558
AfiI CCNNNNNNNGG 3 cut(s) 104, 175, 250
AflIII ACRYGT 1 cut(s) 553
AgsI TTSAA 3 cut(s) 229, 398, 491
AjnI CCWGG 2 cut(s) 174, 532
AleI CACNNNNGTG 1 cut(s) 444
AluBI AGCT 3 cut(s) 10, 208, 311
AluI AGCT 3 cut(s) 10, 208, 311
Alw26I GTCTC 1 cut(s) 15
AlwNI CAGNNNCTG 1 cut(s) 211
AoxI GGCC 3 cut(s) 285, 343, 350
ApeKI GCWGC 4 cut(s) 101, 205, 293, 308
Asp700I GAANNNNTTC 3 cut(s) 138, 224, 470
AspS9I GGNCC 1 cut(s) 368
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 3 cut(s) 158, 275, 327
AvaII GGWCC 1 cut(s) 368
BarI GAAGNNNNNNTAC 2 cut(s) 295, 327
BbvI GCAGC 4 cut(s) 88, 217, 280, 320
BccI CCATC 2 cut(s) 254, 441
BceAI ACGGC 1 cut(s) 358
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 2 cut(s) 176, 534
BclI TGATCA 1 cut(s) 507
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 15
BisI GCNGC 4 cut(s) 102, 206, 294, 309
BlsI GCNGC 4 cut(s) 103, 207, 295, 310
Bme1390I CCNGG 3 cut(s) 98, 176, 534
Bme18I GGWCC 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 368
BmiI GGNNCC 1 cut(s) 370
BmrFI CCNGG 3 cut(s) 98, 176, 534
BpmI CTGGAG 1 cut(s) 516
Bpu10I CCTNAGC 1 cut(s) 11
BpuMI CCSGG 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 512
BsaJI CCNNGG 2 cut(s) 70, 390
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 175, 250
Bse118I RCCGGY 2 cut(s) 104, 365
Bse8I GATNNNNATC 1 cut(s) 512
BseBI CCWGG 2 cut(s) 176, 534
BseDI CCNNGG 2 cut(s) 70, 390
BseGI GGATG 2 cut(s) 265, 433
BseJI GATNNNNATC 1 cut(s) 512
BseLI CCNNNNNNNGG 3 cut(s) 104, 175, 250
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 4 cut(s) 88, 217, 280, 320
BshFI GGCC 3 cut(s) 287, 345, 352
BsiSI CCGG 3 cut(s) 98, 105, 366
BslFI GGGAC 1 cut(s) 354
BslI CCNNNNNNNGG 3 cut(s) 104, 175, 250
BsmAI GTCTC 1 cut(s) 15
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 354
BsmI GAATGC 1 cut(s) 207
BsnI GGCC 3 cut(s) 287, 345, 352
Bsp1407I TGTACA 1 cut(s) 272
Bsp143I GATC 1 cut(s) 507
Bsp19I CCATGG 1 cut(s) 70
BspACI CCGC 1 cut(s) 291
BspANI GGCC 3 cut(s) 287, 345, 352
BspLI GGNNCC 1 cut(s) 370
BspQI GCTCTTC 1 cut(s) 111
BsrFI RCCGGY 2 cut(s) 104, 365
BsrGI TGTACA 1 cut(s) 272
BssAI RCCGGY 2 cut(s) 104, 365
BssECI CCNNGG 2 cut(s) 70, 390
BssMI GATC 1 cut(s) 507
BssNAI GTATAC 1 cut(s) 426
BssT1I CCWWGG 2 cut(s) 70, 390
Bst1107I GTATAC 1 cut(s) 426
Bst2UI CCWGG 2 cut(s) 176, 534
Bst4CI ACNGT 3 cut(s) 272, 446, 495
Bst6I CTCTTC 1 cut(s) 111
BstAUI TGTACA 1 cut(s) 272
BstC8I GCNNGC 3 cut(s) 106, 123, 354
BstDEI CTNAG 3 cut(s) 11, 146, 454
BstDSI CCRYGG 1 cut(s) 70
BstF5I GGATG 2 cut(s) 265, 433
BstKTI GATC 1 cut(s) 510
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 1 cut(s) 507
BstMWI GCNNNNNNNGC 2 cut(s) 293, 362
BstNI CCWGG 2 cut(s) 176, 534
BstNSI RCATGY 1 cut(s) 557
BstSCI CCNGG 3 cut(s) 96, 174, 532
BstV1I GCAGC 4 cut(s) 88, 217, 280, 320
BstZ17I GTATAC 1 cut(s) 426
BsuRI GGCC 3 cut(s) 287, 345, 352
BtgI CCRYGG 1 cut(s) 70
BtsCI GGATG 2 cut(s) 265, 433
Cac8I GCNNGC 3 cut(s) 106, 123, 354
CaiI CAGNNNCTG 1 cut(s) 211
Cfr10I RCCGGY 2 cut(s) 104, 365
Cfr13I GGNCC 1 cut(s) 368
Csp6I GTAC 3 cut(s) 273, 537, 557
CviAII CATG 4 cut(s) 71, 84, 373, 554
CviQI GTAC 3 cut(s) 273, 537, 557
DdeI CTNAG 3 cut(s) 11, 146, 454
DpnI GATC 1 cut(s) 509
DpnII GATC 1 cut(s) 507
EaeI YGGCCR 1 cut(s) 343
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco130I CCWWGG 2 cut(s) 70, 390
Eco47I GGWCC 1 cut(s) 368
Eco57I CTGAAG 1 cut(s) 135
EcoRII CCWGG 2 cut(s) 174, 532
EcoT14I CCWWGG 2 cut(s) 70, 390
ErhI CCWWGG 2 cut(s) 70, 390
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 4 cut(s) 74, 87, 376, 557
FaqI GGGAC 1 cut(s) 354
FatI CATG 4 cut(s) 70, 83, 372, 553
FauNDI CATATG 1 cut(s) 277
FbaI TGATCA 1 cut(s) 507
FblI GTMKAC 1 cut(s) 425
Fnu4HI GCNGC 4 cut(s) 102, 206, 294, 309
FokI GGATG 2 cut(s) 272, 420
Fsp4HI GCNGC 4 cut(s) 102, 206, 294, 309
GluI GCNGC 4 cut(s) 102, 206, 294, 309
GsuI CTGGAG 1 cut(s) 516
HaeIII GGCC 3 cut(s) 287, 345, 352
HapII CCGG 3 cut(s) 98, 105, 366
Hin1II CATG 4 cut(s) 74, 87, 376, 557
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 3 cut(s) 171, 238, 529
HpaII CCGG 3 cut(s) 98, 105, 366
HphI GGTGA 3 cut(s) 158, 275, 327
Hpy166II GTNNAC 2 cut(s) 426, 449
Hpy188I TCNGA 2 cut(s) 465, 563
Hpy188III TCNNGA 1 cut(s) 403
Hpy8I GTNNAC 2 cut(s) 426, 449
HpyAV CCTTC 3 cut(s) 20, 297, 325
HpyCH4III ACNGT 3 cut(s) 272, 446, 495
HpyCH4V TGCA 3 cut(s) 32, 205, 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 293, 362
HpyF3I CTNAG 3 cut(s) 11, 146, 454
Hsp92II CATG 4 cut(s) 74, 87, 376, 557
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 507
Kzo9I GATC 1 cut(s) 507
LguI GCTCTTC 1 cut(s) 111
Lsp1109I GCAGC 4 cut(s) 88, 217, 280, 320
MaeIII GTNAC 3 cut(s) 164, 185, 403
MalI GATC 1 cut(s) 509
MboI GATC 1 cut(s) 507
MboII GAAGA 2 cut(s) 128, 146
MluCI AATT 2 cut(s) 466, 541
MlyI GAGTC 2 cut(s) 180, 523
MroNI GCCGGC 1 cut(s) 104
MroXI GAANNNNTTC 3 cut(s) 138, 224, 470
MslI CAYNNNNRTG 1 cut(s) 444
MspA1I CMGCKG 1 cut(s) 293
MspI CCGG 3 cut(s) 98, 105, 366
MspR9I CCNGG 3 cut(s) 98, 176, 534
Mva1269I GAATGC 1 cut(s) 207
MvaI CCWGG 2 cut(s) 176, 534
MwoI GCNNNNNNNGC 2 cut(s) 293, 362
NaeI GCCGGC 1 cut(s) 106
NciI CCSGG 1 cut(s) 98
NcoI CCATGG 1 cut(s) 70
NdeI CATATG 1 cut(s) 277
NdeII GATC 1 cut(s) 507
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 4 cut(s) 74, 87, 376, 557
NlaIV GGNNCC 1 cut(s) 370
NmuCI GTSAC 3 cut(s) 164, 185, 403
NspI RCATGY 1 cut(s) 557
OliI CACNNNNGTG 1 cut(s) 444
PciI ACATGT 1 cut(s) 553
PciSI GCTCTTC 1 cut(s) 111
PctI GAATGC 1 cut(s) 207
PdiI GCCGGC 1 cut(s) 106
PdmI GAANNNNTTC 3 cut(s) 138, 224, 470
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 4 cut(s) 103, 207, 295, 310
PleI GAGTC 2 cut(s) 179, 523
PpsI GAGTC 2 cut(s) 179, 523
PscI ACATGT 1 cut(s) 553
PsiI TTATAA 1 cut(s) 549
Psp6I CCWGG 2 cut(s) 174, 532
PspGI CCWGG 2 cut(s) 174, 532
PspN4I GGNNCC 1 cut(s) 370
PspPI GGNCC 1 cut(s) 368
PstNI CAGNNNCTG 1 cut(s) 211
RsaI GTAC 3 cut(s) 274, 538, 558
RsaNI GTAC 3 cut(s) 273, 537, 557
RseI CAYNNNNRTG 1 cut(s) 444
SapI GCTCTTC 1 cut(s) 111
SatI GCNGC 4 cut(s) 102, 206, 294, 309
Sau3AI GATC 1 cut(s) 507
Sau96I GGNCC 1 cut(s) 368
SchI GAGTC 2 cut(s) 180, 523
ScrFI CCNGG 3 cut(s) 98, 176, 534
SinI GGWCC 1 cut(s) 368
SmiMI CAYNNNNRTG 1 cut(s) 444
Sse9I AATT 2 cut(s) 466, 541
SsiI CCGC 1 cut(s) 291
StyD4I CCNGG 3 cut(s) 96, 174, 532
StyI CCWWGG 2 cut(s) 70, 390
TaaI ACNGT 3 cut(s) 272, 446, 495
TaqI TCGA 3 cut(s) 93, 199, 413
TasI AATT 2 cut(s) 466, 541
TatI WGTACW 2 cut(s) 272, 556
TfiI GAWTC 1 cut(s) 238
TseFI GTSAC 3 cut(s) 164, 185, 403
TseI GCWGC 4 cut(s) 101, 205, 293, 308
Tsp45I GTSAC 3 cut(s) 164, 185, 403
TspDTI ATGAA 2 cut(s) 294, 534
VpaK11BI GGWCC 1 cut(s) 368
XceI RCATGY 1 cut(s) 557
XmiI GTMKAC 1 cut(s) 425
XmnI GAANNNNTTC 3 cut(s) 138, 224, 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.