Rh2CG467100

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000173
Physical Location & Seq
Forward (+)
63028137 .. 63055014
26878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG467100.1

Sequence Viewer

Length: 432 bp
ATGTGGAAGCTTAAGGTTGCAGAAGGTGGGGAAGAGTCCTCGGCTTACATTTACAGCACGAACAACTTTGTGGGAAGGCAGACATGGGAGTTTGATCCTGATGCAGGAACTGATGAAGAGCGAGCTGAGGTTGAAGCGGCTCGTCTTCATTTCTACAACAATCGCCATCAGGTTAAGCCCAGTGGTGACCTTCTTTGGAGATTGCAGCCAGCCAAGAGTGATCTTTTACTTGTTGGCCATAATCGTCCATGTATTGTGCATTGGACTCTATGTCTTGAGATACCACGCAAAGAAAAAGGCGGAAGAGGCCTACACCGAGACCGATTTCTACAGTTCTCGTTACCATCTTTCTCACTTGGATTGCCAGCCTACTACGTTATTACTTCGTCTAAGTCATCTTCGAACTTATCACGTTATGACGGTCTTAGGTAA

Protein Analysis

143

Amino Acids

16.38

Weight (kDa)

8.58

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 137, 300
AclWI GGATC 1 cut(s) 89
AcoI YGGCCR 1 cut(s) 235
AfiI CCNNNNNNNGG 1 cut(s) 104
AflII CTTAAG 1 cut(s) 11
AgsI TTSAA 1 cut(s) 134
AhdI GACNNNNNGTC 1 cut(s) 270
AluBI AGCT 2 cut(s) 10, 125
AluI AGCT 2 cut(s) 10, 125
Alw26I GTCTC 1 cut(s) 312
AlwI GGATC 1 cut(s) 89
AlwNI CAGNNNCTG 1 cut(s) 110
AoxI GGCC 2 cut(s) 235, 307
ApeKI GCWGC 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 197
AsuII TTCGAA 1 cut(s) 401
BalI TGGCCA 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 137
BbvCI CCTCAGC 1 cut(s) 126
BbvI GCAGC 1 cut(s) 217
BccI CCATC 2 cut(s) 174, 352
BcoDI GTCTC 1 cut(s) 312
BfmI CTRYAG 1 cut(s) 329
BfrI CTTAAG 1 cut(s) 11
BisI GCNGC 2 cut(s) 138, 206
BlsI GCNGC 2 cut(s) 139, 207
BmeRI GACNNNNNGTC 1 cut(s) 270
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 1 cut(s) 91
BmuI ACTGGG 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 137
Bpu10I CCTNAGC 1 cut(s) 126
Bpu14I TTCGAA 1 cut(s) 401
BpuEI CTTGAG 1 cut(s) 296
BsaI GGTCTC 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 104
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 217
BshFI GGCC 2 cut(s) 237, 309
BslI CCNNNNNNNGG 1 cut(s) 104
BsmAI GTCTC 1 cut(s) 312
BsnI GGCC 2 cut(s) 237, 309
Bso31I GGTCTC 1 cut(s) 312
Bsp119I TTCGAA 1 cut(s) 401
Bsp143I GATC 2 cut(s) 94, 220
BspACI CCGC 2 cut(s) 137, 300
BspANI GGCC 2 cut(s) 237, 309
BspCNI CTCAG 1 cut(s) 118
BspPI GGATC 1 cut(s) 89
BspQI GCTCTTC 1 cut(s) 111
BspT104I TTCGAA 1 cut(s) 401
BspTI CTTAAG 1 cut(s) 11
BspTNI GGTCTC 1 cut(s) 312
BsrI ACTGG 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 2 cut(s) 94, 220
Bst4CI ACNGT 2 cut(s) 333, 422
Bst6I CTCTTC 3 cut(s) 27, 111, 298
BstAFI CTTAAG 1 cut(s) 11
BstBI TTCGAA 1 cut(s) 401
BstC8I GCNNGC 3 cut(s) 123, 210, 366
BstDEI CTNAG 3 cut(s) 126, 390, 425
BstEII GGTNACC 1 cut(s) 185
BstENI CCTNNNNNAGG 1 cut(s) 102
BstKTI GATC 2 cut(s) 97, 223
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 2 cut(s) 94, 220
BstMWI GCNNNNNNNGC 1 cut(s) 306
BstPI GGTNACC 1 cut(s) 185
BstSFI CTRYAG 1 cut(s) 329
BstV1I GCAGC 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 137
BsuRI GGCC 2 cut(s) 237, 309
BtsIMutI CAGTG 1 cut(s) 187
Cac8I GCNNGC 3 cut(s) 123, 210, 366
CaiI CAGNNNCTG 1 cut(s) 110
CviAII CATG 2 cut(s) 84, 249
DdeI CTNAG 3 cut(s) 126, 390, 425
DpnI GATC 2 cut(s) 96, 222
DpnII GATC 2 cut(s) 94, 220
DriI GACNNNNNGTC 1 cut(s) 270
EaeI YGGCCR 1 cut(s) 235
Eam1104I CTCTTC 3 cut(s) 27, 111, 298
Eam1105I GACNNNNNGTC 1 cut(s) 270
EarI CTCTTC 3 cut(s) 27, 111, 298
EciI GGCGGA 1 cut(s) 315
Eco147I AGGCCT 1 cut(s) 309
Eco31I GGTCTC 1 cut(s) 312
Eco91I GGTNACC 1 cut(s) 185
EcoNI CCTNNNNNAGG 1 cut(s) 102
EcoO65I GGTNACC 1 cut(s) 185
FaeI CATG 2 cut(s) 87, 252
FaiI YATR 5 cut(s) 85, 240, 250, 271, 417
FatI CATG 2 cut(s) 83, 248
Fnu4HI GCNGC 2 cut(s) 138, 206
Fsp4HI GCNGC 2 cut(s) 138, 206
GluI GCNGC 2 cut(s) 138, 206
HaeIII GGCC 2 cut(s) 237, 309
Hin1II CATG 2 cut(s) 87, 252
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 2 cut(s) 35, 265
HphI GGTGA 1 cut(s) 197
Hpy188III TCNNGA 2 cut(s) 98, 275
HpyAV CCTTC 3 cut(s) 17, 69, 200
HpyCH4III ACNGT 2 cut(s) 333, 422
HpyCH4IV ACGT 2 cut(s) 375, 412
HpyCH4V TGCA 4 cut(s) 20, 104, 205, 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 306
HpyF3I CTNAG 3 cut(s) 126, 390, 425
HpySE526I ACGT 2 cut(s) 375, 412
Hsp92II CATG 2 cut(s) 87, 252
Kzo9I GATC 2 cut(s) 94, 220
LguI GCTCTTC 1 cut(s) 111
LpnPI CCDG 6 cut(s) 90, 111, 155, 193, 222, 378
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 1 cut(s) 91
MaeII ACGT 2 cut(s) 375, 412
MaeIII GTNAC 2 cut(s) 185, 339
MalI GATC 2 cut(s) 96, 222
MboI GATC 2 cut(s) 94, 220
MboII GAAGA 5 cut(s) 44, 128, 137, 315, 390
MlsI TGGCCA 1 cut(s) 237
MluNI TGGCCA 1 cut(s) 237
MlyI GAGTC 2 cut(s) 44, 259
MnlI CCTC 3 cut(s) 49, 121, 299
Mox20I TGGCCA 1 cut(s) 237
MscI TGGCCA 1 cut(s) 237
MseI TTAA 2 cut(s) 12, 174
Msp20I TGGCCA 1 cut(s) 237
MspCI CTTAAG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 306
NdeII GATC 2 cut(s) 94, 220
NlaIII CATG 2 cut(s) 87, 252
NmeAIII GCCGAG 1 cut(s) 20
NmuCI GTSAC 1 cut(s) 185
NspV TTCGAA 1 cut(s) 401
PceI AGGCCT 1 cut(s) 309
PciSI GCTCTTC 1 cut(s) 111
PkrI GCNGC 2 cut(s) 139, 207
PleI GAGTC 2 cut(s) 43, 259
PpsI GAGTC 2 cut(s) 43, 259
PspEI GGTNACC 1 cut(s) 185
PstNI CAGNNNCTG 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 12, 174
SatI GCNGC 2 cut(s) 138, 206
Sau3AI GATC 2 cut(s) 94, 220
SchI GAGTC 2 cut(s) 44, 259
SfaNI GCATC 1 cut(s) 91
SfcI CTRYAG 1 cut(s) 329
SfuI TTCGAA 1 cut(s) 401
SmlI CTYRAG 2 cut(s) 11, 275
SmoI CTYRAG 2 cut(s) 11, 275
SseBI AGGCCT 1 cut(s) 309
SsiI CCGC 2 cut(s) 137, 300
StuI AGGCCT 1 cut(s) 309
TaaI ACNGT 2 cut(s) 333, 422
TaiI ACGT 2 cut(s) 378, 415
TaqI TCGA 1 cut(s) 401
TaqII GACCGA 1 cut(s) 336
TauI GCSGC 1 cut(s) 140
Tru1I TTAA 2 cut(s) 12, 174
Tru9I TTAA 2 cut(s) 12, 174
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 1 cut(s) 205
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 2 cut(s) 129, 137
TspRI CASTG 1 cut(s) 187
Vha464I CTTAAG 1 cut(s) 11
XagI CCTNNNNNAGG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.