Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000173

Physical Location & Seq

Genomic Coordinates Reverse (-)

6007682 .. 6018348

Gene Structure 10667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG073500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTGGAAGCTTAAGGTTGCAGAAGGTGGGGATTCCTCAGCTTACATTTACAGCACAAACAACTTTGTCGGAAGGCAGACATGGGAGTTTGATCCCGACGCAGGAACTCCTGAAGAGCGAGCTCAGGTTGAAGAGGCCCGTCTTCATTTCTACAACAACCGCTATCAGGTCAAGCCCAGTGGTGACCTTCTTTGGCATATGCAGCGGTCAGGATCAAATGCACATGCAACAGTCAAGTCATGCATCCCGTGTGAAAGAGCTAGCTGCAACGGTGTTGATGAAGTCATCAATACGTGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

100

Amino Acids

11.36

Weight (kDa)

5.52

Isoelectric Point (pI)

23.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca	FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica	MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica	Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis	pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis	RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata	RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora	Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii	Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa	Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha	Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana	Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	160, 205
AclWI	GGATC	2 cut(s)	86, 220
AcuI	CTGAAG	1 cut(s)	132
AfiI	CCNNNNNNNGG	2 cut(s)	101, 166
AflII	CTTAAG	1 cut(s)	11
AgsI	TTSAA	1 cut(s)	131
AluBI	AGCT	5 cut(s)	10, 41, 122, 260, 264
AluI	AGCT	5 cut(s)	10, 41, 122, 260, 264
Alw21I	GWGCWC	1 cut(s)	124
AlwI	GGATC	2 cut(s)	86, 220
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	2 cut(s)	202, 264
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	194
AsuNHI	GCTAGC	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	124
BbsI	GAAGAC	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	124
BbvCI	CCTCAGC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	214, 251
BfaI	CTAG	1 cut(s)	261
BfrI	CTTAAG	1 cut(s)	11
BisI	GCNGC	2 cut(s)	203, 265
BlsI	GCNGC	2 cut(s)	204, 266
BmgT120I	GGNCC	1 cut(s)	136
BmrI	ACTGGG	1 cut(s)	171
BmsI	GCATC	1 cut(s)	252
BmtI	GCTAGC	1 cut(s)	264
BmuI	ACTGGG	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	134
Bpu10I	CCTNAGC	2 cut(s)	37, 123
BsaAI	YACGTR	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 166
Bse1I	ACTGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	243
BseLI	CCNNNNNNNGG	2 cut(s)	101, 166
BseMII	CTCAG	2 cut(s)	51, 137
BseNI	ACTGG	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	214, 251
BshFI	GGCC	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	124
BslI	CCNNNNNNNGG	2 cut(s)	101, 166
BsnI	GGCC	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	91, 212
BspACI	CCGC	2 cut(s)	160, 205
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	2 cut(s)	50, 136
BspOI	GCTAGC	1 cut(s)	264
BspPI	GGATC	2 cut(s)	86, 220
BspQI	GCTCTTC	1 cut(s)	108
BspTI	CTTAAG	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	177
BssMI	GATC	2 cut(s)	91, 212
Bst4CI	ACNGT	2 cut(s)	232, 272
Bst6I	CTCTTC	2 cut(s)	108, 126
BstAFI	CTTAAG	1 cut(s)	11
BstBAI	YACGTR	1 cut(s)	294
BstC8I	GCNNGC	2 cut(s)	120, 262
BstDEI	CTNAG	2 cut(s)	37, 123
BstEII	GGTNACC	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	243
BstKTI	GATC	2 cut(s)	94, 215
BstMBI	GATC	2 cut(s)	91, 212
BstMWI	GCNNNNNNNGC	1 cut(s)	202
BstNSI	RCATGY	1 cut(s)	227
BstPI	GGTNACC	1 cut(s)	182
BstV1I	GCAGC	2 cut(s)	214, 251
BstV2I	GAAGAC	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	137
BtsCI	GGATG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	184
Cac8I	GCNNGC	2 cut(s)	120, 262
Cfr13I	GGNCC	1 cut(s)	136
CseI	GACGC	1 cut(s)	107
CspCI	CAANNNNNGTGG	2 cut(s)	160, 195
CviAII	CATG	3 cut(s)	81, 224, 240
CviJI	RGCY	7 cut(s)	10, 41, 122, 137, 175, 260, 264
CviKI_1	RGCY	7 cut(s)	10, 41, 122, 137, 175, 260, 264
DdeI	CTNAG	2 cut(s)	37, 123
DpnI	GATC	2 cut(s)	93, 214
DpnII	GATC	2 cut(s)	91, 212
Eam1104I	CTCTTC	2 cut(s)	108, 126
EarI	CTCTTC	2 cut(s)	108, 126
Ecl136II	GAGCTC	1 cut(s)	122
Eco24I	GRGCYC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	122
Eco57I	CTGAAG	1 cut(s)	132
Eco91I	GGTNACC	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	122
EcoO65I	GGTNACC	1 cut(s)	182
EcoT22I	ATGCAT	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	124
FaeI	CATG	3 cut(s)	84, 227, 243
FaiI	YATR	5 cut(s)	82, 198, 200, 225, 241
FatI	CATG	3 cut(s)	80, 223, 239
FauNDI	CATATG	1 cut(s)	198
Fnu4HI	GCNGC	2 cut(s)	203, 265
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	2 cut(s)	203, 265
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	2 cut(s)	203, 265
HaeIII	GGCC	1 cut(s)	137
HgaI	GACGC	1 cut(s)	107
Hin1II	CATG	3 cut(s)	84, 227, 243
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	1 cut(s)	32
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	297
Hpy188I	TCNGA	1 cut(s)	71
Hpy188III	TCNNGA	3 cut(s)	95, 110, 210
Hpy8I	GTNNAC	1 cut(s)	297
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	3 cut(s)	17, 66, 197
HpyCH4III	ACNGT	2 cut(s)	232, 272
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	6 cut(s)	20, 202, 221, 227, 243, 267
HpyF10VI	GCNNNNNNNGC	1 cut(s)	202
HpyF3I	CTNAG	2 cut(s)	37, 123
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	3 cut(s)	84, 227, 243
Kzo9I	GATC	2 cut(s)	91, 212
LguI	GCTCTTC	1 cut(s)	108
LpnPI	CCDG	6 cut(s)	87, 110, 123, 152, 190, 195
Lsp1109I	GCAGC	2 cut(s)	214, 251
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	2 cut(s)	93, 214
MboI	GATC	2 cut(s)	91, 212
MboII	GAAGA	3 cut(s)	125, 134, 143
MhlI	GDGCHC	1 cut(s)	124
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	2 cut(s)	46, 127
Mph1103I	ATGCAT	1 cut(s)	245
MseI	TTAA	1 cut(s)	12
MspA1I	CMGCKG	1 cut(s)	205
MspCI	CTTAAG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	202
NdeI	CATATG	1 cut(s)	198
NdeII	GATC	2 cut(s)	91, 212
NheI	GCTAGC	1 cut(s)	260
NlaIII	CATG	3 cut(s)	84, 227, 243
NmuCI	GTSAC	1 cut(s)	182
NsiI	ATGCAT	1 cut(s)	245
NspI	RCATGY	1 cut(s)	227
PciSI	GCTCTTC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	32
PkrI	GCNGC	2 cut(s)	204, 266
Ppu21I	YACGTR	1 cut(s)	294
Psp124BI	GAGCTC	1 cut(s)	124
PspEI	GGTNACC	1 cut(s)	182
PspPI	GGNCC	1 cut(s)	136
SacI	GAGCTC	1 cut(s)	124
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	2 cut(s)	203, 265
Sau3AI	GATC	2 cut(s)	91, 212
Sau96I	GGNCC	1 cut(s)	136
SduI	GDGCHC	1 cut(s)	124
SfaNI	GCATC	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
SsiI	CCGC	2 cut(s)	160, 205
SspMI	CTAG	1 cut(s)	261
SstI	GAGCTC	1 cut(s)	124
TaaI	ACNGT	2 cut(s)	232, 272
TaiI	ACGT	1 cut(s)	296
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	2 cut(s)	202, 264
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	2 cut(s)	134, 294
TspRI	CASTG	1 cut(s)	184
Vha464I	CTTAAG	1 cut(s)	11
XceI	RCATGY	1 cut(s)	227
XspI	CTAG	1 cut(s)	261
Zsp2I	ATGCAT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.