Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000173

Physical Location & Seq

Genomic Coordinates Forward (+)

68652775 .. 68692285

Gene Structure 39511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG466800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTGGAAGCTTAAGGTTGCAGAAGGTGGGGATTCCTCAGCTTACATTTACAGCACAAACAACTTTGTCGGAAGGCAGACATGGGAGTTTGATTCGGATGCAGGAACTCCTGAAGAGCGAGCTGAGGTTGAAGAGGCCCGTCTTCATTTCTACAACAACCGCTATCAGGTCAAGCCCAGTGGTGACATTCTTTGGCGTATGCAGTTCCTAAGGGAGAAGAAGTTCAAACAGACAATTCCTCCAGTAAAAATTGAAGATGGCGAGGTTATCACACATGAAAAAACCACAGATGCACTGAGAAGGTCTGTCCACTTCTTCTCAGCATTGCAGGCGAGCGATGGCCATTGGCCTGCGGAAAATGCCGGCCCTTTGTTTTTCCTTCCTCCCTTGGAAAATTCAAACCAGCAATTGAATAACATAAAGAACACCAAAACCAAAATTGAAACTCAAACAATGTGGAAGCTCAAGGTTGCAGAAGGTGGGGATTCCTCAGCTTACATTTACAGCACAAACAACTTTGTCGGAAGGCAGACATGGGAGTTTGATCCCGACGCAGGAACTCCTGAAGAGCGAGCTGAGGTTGAAGAGGCCCGTCTTCATTTCTACAACAACCGCTATCAGGTCAAGGCCAGTGGTGACCTTCTTTGGCGTATGCAGTTCCTAAGGGAGAAGAAGTTCAAACAGACAATTCCTCCAGTAAAAATTGAAGATGGCGAGGTTATCACACATGAAAAACCACAGATGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

249

Amino Acids

28.98

Weight (kDa)

6.02

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca	FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica	MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica	Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis	pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis	RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata	RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora	Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii	Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa	Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha	Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana	Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	160, 353, 613
AclWI	GGATC	1 cut(s)	539
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	394
AcuI	CTGAAG	2 cut(s)	132, 585
AfiI	CCNNNNNNNGG	3 cut(s)	166, 554, 619
AflII	CTTAAG	1 cut(s)	11
AgsI	TTSAA	9 cut(s)	131, 226, 254, 399, 412, 443, 584, 679, 707
AloI	GAACNNNNNNTCC	4 cut(s)	206, 238, 659, 691
AluBI	AGCT	6 cut(s)	10, 41, 122, 463, 494, 575
AluI	AGCT	6 cut(s)	10, 41, 122, 463, 494, 575
AlwI	GGATC	1 cut(s)	539
AoxI	GGCC	6 cut(s)	135, 340, 347, 364, 588, 627
ApoI	RAATTY	1 cut(s)	394
Asp700I	GAANNNNTTC	2 cut(s)	221, 674
AspS9I	GGNCC	3 cut(s)	136, 365, 589
AsuHPI	GGTGA	2 cut(s)	194, 647
AxyI	CCTNAGG	2 cut(s)	209, 662
BalI	TGGCCA	1 cut(s)	342
BbsI	GAAGAC	2 cut(s)	134, 587
BbvCI	CCTCAGC	4 cut(s)	37, 123, 490, 576
BccI	CCATC	3 cut(s)	251, 332, 704
BfrI	CTTAAG	1 cut(s)	11
BmgT120I	GGNCC	3 cut(s)	136, 365, 589
BmrI	ACTGGG	1 cut(s)	171
BmsI	GCATC	3 cut(s)	88, 280, 732
BmuI	ACTGGG	1 cut(s)	171
BpiI	GAAGAC	2 cut(s)	134, 587
BpmI	CTGGAG	2 cut(s)	225, 678
Bpu10I	CCTNAGC	4 cut(s)	37, 123, 490, 576
BpuEI	CTTGAG	1 cut(s)	449
BsaJI	CCNNGG	1 cut(s)	387
BsaXI	ACNNNNNCTCC	8 cut(s)	206, 223, 236, 253, 659, 676, 689, 706
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 554, 619
Bse118I	RCCGGY	1 cut(s)	362
Bse1I	ACTGG	4 cut(s)	177, 242, 630, 695
Bse21I	CCTNAGG	2 cut(s)	209, 662
Bse3DI	GCAATG	1 cut(s)	323
BseDI	CCNNGG	1 cut(s)	387
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	3 cut(s)	166, 554, 619
BseMI	GCAATG	1 cut(s)	323
BseMII	CTCAG	6 cut(s)	51, 114, 287, 333, 504, 567
BseNI	ACTGG	4 cut(s)	177, 242, 630, 695
BshFI	GGCC	6 cut(s)	137, 342, 349, 366, 590, 629
BsiSI	CCGG	1 cut(s)	363
BslI	CCNNNNNNNGG	3 cut(s)	166, 554, 619
BsnI	GGCC	6 cut(s)	137, 342, 349, 366, 590, 629
Bsp143I	GATC	1 cut(s)	544
BspACI	CCGC	3 cut(s)	160, 353, 613
BspANI	GGCC	6 cut(s)	137, 342, 349, 366, 590, 629
BspCNI	CTCAG	6 cut(s)	50, 115, 288, 332, 503, 568
BspPI	GGATC	1 cut(s)	539
BspQI	GCTCTTC	2 cut(s)	108, 561
BspTI	CTTAAG	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	323
BsrFI	RCCGGY	1 cut(s)	362
BsrI	ACTGG	4 cut(s)	177, 242, 630, 695
BssAI	RCCGGY	1 cut(s)	362
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	1 cut(s)	544
BssT1I	CCWWGG	1 cut(s)	387
Bst6I	CTCTTC	4 cut(s)	108, 126, 561, 579
BstAFI	CTTAAG	1 cut(s)	11
BstC8I	GCNNGC	6 cut(s)	120, 330, 334, 351, 364, 573
BstDEI	CTNAG	8 cut(s)	37, 123, 209, 296, 319, 490, 576, 662
BstEII	GGTNACC	1 cut(s)	635
BstF5I	GGATG	1 cut(s)	103
BstKTI	GATC	1 cut(s)	547
BstMBI	GATC	1 cut(s)	544
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 359
BstPI	GGTNACC	1 cut(s)	635
BstV2I	GAAGAC	2 cut(s)	134, 587
Bsu36I	CCTNAGG	2 cut(s)	209, 662
BsuRI	GGCC	6 cut(s)	137, 342, 349, 366, 590, 629
BtgZI	GCGATG	1 cut(s)	351
BtsCI	GGATG	1 cut(s)	103
BtsIMutI	CAGTG	4 cut(s)	184, 293, 637, 745
Cac8I	GCNNGC	6 cut(s)	120, 330, 334, 351, 364, 573
Cfr10I	RCCGGY	1 cut(s)	362
Cfr13I	GGNCC	3 cut(s)	136, 365, 589
CseI	GACGC	1 cut(s)	560
CspCI	CAANNNNNGTGG	6 cut(s)	160, 195, 437, 472, 613, 648
CviAII	CATG	4 cut(s)	81, 275, 534, 728
DdeI	CTNAG	8 cut(s)	37, 123, 209, 296, 319, 490, 576, 662
DpnI	GATC	1 cut(s)	546
DpnII	GATC	1 cut(s)	544
EaeI	YGGCCR	1 cut(s)	340
Eam1104I	CTCTTC	4 cut(s)	108, 126, 561, 579
EarI	CTCTTC	4 cut(s)	108, 126, 561, 579
Eco130I	CCWWGG	1 cut(s)	387
Eco57I	CTGAAG	2 cut(s)	132, 585
Eco81I	CCTNAGG	2 cut(s)	209, 662
Eco91I	GGTNACC	1 cut(s)	635
EcoO65I	GGTNACC	1 cut(s)	635
EcoT14I	CCWWGG	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	4 cut(s)	84, 278, 537, 731
FaiI	YATR	7 cut(s)	82, 200, 276, 419, 535, 653, 729
FatI	CATG	4 cut(s)	80, 274, 533, 727
FokI	GGATG	1 cut(s)	110
GsuI	CTGGAG	2 cut(s)	225, 678
HaeIII	GGCC	6 cut(s)	137, 342, 349, 366, 590, 629
HapII	CCGG	1 cut(s)	363
HgaI	GACGC	1 cut(s)	560
Hin1II	CATG	4 cut(s)	84, 278, 537, 731
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	3 cut(s)	32, 92, 485
HpaII	CCGG	1 cut(s)	363
HphI	GGTGA	2 cut(s)	194, 647
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	3 cut(s)	71, 97, 524
Hpy188III	TCNNGA	3 cut(s)	110, 548, 563
Hpy8I	GTNNAC	1 cut(s)	310
Hpy99I	CGWCG	1 cut(s)	554
HpyAV	CCTTC	7 cut(s)	17, 66, 294, 389, 470, 519, 650
HpyCH4V	TGCA	8 cut(s)	20, 101, 202, 293, 328, 473, 655, 745
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 359
HpyF3I	CTNAG	8 cut(s)	37, 123, 209, 296, 319, 490, 576, 662
Hsp92II	CATG	4 cut(s)	84, 278, 537, 731
KroI	GCCGGC	1 cut(s)	362
KroNI	GCCGGC	1 cut(s)	364
Kzo9I	GATC	1 cut(s)	544
LguI	GCTCTTC	2 cut(s)	108, 561
LweI	GCATC	3 cut(s)	88, 280, 732
MaeIII	GTNAC	2 cut(s)	182, 635
MalI	GATC	1 cut(s)	546
MboI	GATC	1 cut(s)	544
MfeI	CAATTG	1 cut(s)	407
MlsI	TGGCCA	1 cut(s)	342
MluCI	AATT	7 cut(s)	234, 249, 394, 407, 438, 687, 702
MluNI	TGGCCA	1 cut(s)	342
MmeI	TCCRAC	2 cut(s)	49, 502
Mox20I	TGGCCA	1 cut(s)	342
MroNI	GCCGGC	1 cut(s)	362
MroXI	GAANNNNTTC	2 cut(s)	221, 674
MscI	TGGCCA	1 cut(s)	342
MseI	TTAA	1 cut(s)	12
Msp20I	TGGCCA	1 cut(s)	342
MspCI	CTTAAG	1 cut(s)	11
MspI	CCGG	1 cut(s)	363
MunI	CAATTG	1 cut(s)	407
MwoI	GCNNNNNNNGC	2 cut(s)	329, 359
NaeI	GCCGGC	1 cut(s)	364
NdeII	GATC	1 cut(s)	544
NgoMIV	GCCGGC	1 cut(s)	362
NlaIII	CATG	4 cut(s)	84, 278, 537, 731
NmuCI	GTSAC	2 cut(s)	182, 635
PciSI	GCTCTTC	2 cut(s)	108, 561
PdiI	GCCGGC	1 cut(s)	364
PdmI	GAANNNNTTC	2 cut(s)	221, 674
PfeI	GAWTC	3 cut(s)	32, 92, 485
PspEI	GGTNACC	1 cut(s)	635
PspPI	GGNCC	3 cut(s)	136, 365, 589
SapI	GCTCTTC	2 cut(s)	108, 561
SaqAI	TTAA	1 cut(s)	12
Sau3AI	GATC	1 cut(s)	544
Sau96I	GGNCC	3 cut(s)	136, 365, 589
SfaNI	GCATC	3 cut(s)	88, 280, 732
SmlI	CTYRAG	2 cut(s)	11, 464
SmoI	CTYRAG	2 cut(s)	11, 464
Sse9I	AATT	7 cut(s)	234, 249, 394, 407, 438, 687, 702
SsiI	CCGC	3 cut(s)	160, 353, 613
StyI	CCWWGG	1 cut(s)	387
TasI	AATT	7 cut(s)	234, 249, 394, 407, 438, 687, 702
TfiI	GAWTC	3 cut(s)	32, 92, 485
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	3 cut(s)	184, 300, 637
TseFI	GTSAC	2 cut(s)	182, 635
Tsp45I	GTSAC	2 cut(s)	182, 635
TspDTI	ATGAA	4 cut(s)	134, 291, 587, 744
TspRI	CASTG	3 cut(s)	184, 300, 637
Vha464I	CTTAAG	1 cut(s)	11
XapI	RAATTY	1 cut(s)	394
XmnI	GAANNNNTTC	2 cut(s)	221, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.