Rh7AG349800

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000173
Physical Location & Seq
Forward (+)
44508555 .. 44524362
15808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG349800.1

Sequence Viewer

Length: 387 bp
ATGTGGAAGCTTAAGTTTGGAGACGAGGGTGCAAATGACCCATACTTGTTCAGCACGAACAACTTCCATGGGAGGCAGACATGGGAGTTCGACCCGGATGCCGGCACACCCCAAGAGCGAGCAGAGGTCGAAGAAGCTCGGCTAAGTTTTTTCAACAATCGTCACCAGGTCCAGGCTTGTAGTGACCTCCTCTGCCGAATGCAGCTGCTGGGAGAGAAAAAGTTCAAACAAACAATTCCCCAAGTAAAGGTAGCAGATGATGAGGACTCTACATATGAAAAGGCCACCGCGGCATTCAGAAGGGCAACTACCTTCTACTCTGCCTTGCAATCACCTCACGGCCATTGGCCTGCTGAAAATGCCGGTCCTATGCAAGTAAACTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00909 ko01110 map00909 map01110
Pfam Domains
Protein Families
SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

128

Amino Acids

14.71

Weight (kDa)

5.52

Isoelectric Point (pI)

31.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 290
AciI CCGC 2 cut(s) 288, 290
AcoI YGGCCR 1 cut(s) 340
AfiI CCNNNNNNNGG 3 cut(s) 101, 172, 247
AflII CTTAAG 1 cut(s) 11
AgsI TTSAA 2 cut(s) 154, 226
AjnI CCWGG 2 cut(s) 165, 171
AluBI AGCT 3 cut(s) 10, 137, 205
AluI AGCT 3 cut(s) 10, 137, 205
Alw26I GTCTC 1 cut(s) 15
AlwNI CAGNNNCTG 1 cut(s) 208
AoxI GGCC 3 cut(s) 282, 340, 347
ApeKI GCWGC 2 cut(s) 202, 205
Asp700I GAANNNNTTC 2 cut(s) 62, 221
AspS9I GGNCC 2 cut(s) 169, 365
AsuC2I CCSGG 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 155, 324
AvaII GGWCC 2 cut(s) 169, 365
BarI GAAGNNNNNNTAC 2 cut(s) 292, 324
BbvI GCAGC 2 cut(s) 192, 214
BceAI ACGGC 1 cut(s) 355
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 2 cut(s) 167, 173
BcnI CCSGG 1 cut(s) 95
BcoDI GTCTC 1 cut(s) 15
BfrI CTTAAG 1 cut(s) 11
BglI GCCNNNNNGGC 1 cut(s) 290
BisI GCNGC 3 cut(s) 203, 206, 291
BlsI GCNGC 3 cut(s) 204, 207, 292
Bme1390I CCNGG 3 cut(s) 95, 167, 173
Bme18I GGWCC 2 cut(s) 169, 365
BmgT120I GGNCC 2 cut(s) 169, 365
BmrFI CCNGG 3 cut(s) 95, 167, 173
BmsI GCATC 1 cut(s) 88
BpuMI CCSGG 1 cut(s) 95
BsaJI CCNNGG 2 cut(s) 67, 288
Bsc4I CCNNNNNNNGG 3 cut(s) 101, 172, 247
Bse118I RCCGGY 2 cut(s) 101, 362
BseBI CCWGG 2 cut(s) 167, 173
BseDI CCNNGG 2 cut(s) 67, 288
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 3 cut(s) 101, 172, 247
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 2 cut(s) 192, 214
BseYI CCCAGC 1 cut(s) 208
Bsh1236I CGCG 1 cut(s) 290
BshFI GGCC 3 cut(s) 284, 342, 349
BsiSI CCGG 3 cut(s) 95, 102, 363
BslI CCNNNNNNNGG 3 cut(s) 101, 172, 247
BsmAI GTCTC 1 cut(s) 15
BsmBI CGTCTC 1 cut(s) 15
BsmI GAATGC 2 cut(s) 204, 293
BsnI GGCC 3 cut(s) 284, 342, 349
Bsp19I CCATGG 1 cut(s) 67
BspACI CCGC 2 cut(s) 288, 290
BspANI GGCC 3 cut(s) 284, 342, 349
BspFNI CGCG 1 cut(s) 290
BspTI CTTAAG 1 cut(s) 11
BsrFI RCCGGY 2 cut(s) 101, 362
BssAI RCCGGY 2 cut(s) 101, 362
BssECI CCNNGG 2 cut(s) 67, 288
BssT1I CCWWGG 1 cut(s) 67
Bst2UI CCWGG 2 cut(s) 167, 173
BstAFI CTTAAG 1 cut(s) 11
BstC8I GCNNGC 3 cut(s) 103, 120, 351
BstDEI CTNAG 1 cut(s) 143
BstDSI CCRYGG 2 cut(s) 67, 288
BstF5I GGATG 1 cut(s) 103
BstFNI CGCG 1 cut(s) 290
BstMAI GTCTC 1 cut(s) 15
BstMWI GCNNNNNNNGC 2 cut(s) 290, 359
BstNI CCWGG 2 cut(s) 167, 173
BstSCI CCNGG 3 cut(s) 93, 165, 171
BstUI CGCG 1 cut(s) 290
BstV1I GCAGC 2 cut(s) 192, 214
BsuRI GGCC 3 cut(s) 284, 342, 349
BtgI CCRYGG 2 cut(s) 67, 288
BtsCI GGATG 1 cut(s) 103
Cac8I GCNNGC 3 cut(s) 103, 120, 351
CaiI CAGNNNCTG 1 cut(s) 208
Cfr10I RCCGGY 2 cut(s) 101, 362
Cfr13I GGNCC 2 cut(s) 169, 365
Cfr42I CCGCGG 1 cut(s) 291
CsiI ACCWGGT 1 cut(s) 165
CviAII CATG 2 cut(s) 68, 81
CviJI RGCY 8 cut(s) 10, 137, 142, 176, 205, 284, 342, 349
CviKI_1 RGCY 8 cut(s) 10, 137, 142, 176, 205, 284, 342, 349
DdeI CTNAG 1 cut(s) 143
EaeI YGGCCR 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 67
Eco47I GGWCC 2 cut(s) 169, 365
EcoRII CCWGG 2 cut(s) 165, 171
EcoT14I CCWWGG 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 67
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 2 cut(s) 71, 84
FaiI YATR 6 cut(s) 43, 69, 82, 274, 276, 371
FatI CATG 2 cut(s) 67, 80
FauNDI CATATG 1 cut(s) 274
Fnu4HI GCNGC 3 cut(s) 203, 206, 291
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 3 cut(s) 203, 206, 291
GluI GCNGC 3 cut(s) 203, 206, 291
GsaI CCCAGC 1 cut(s) 212
HaeIII GGCC 3 cut(s) 284, 342, 349
HapII CCGG 3 cut(s) 95, 102, 363
Hin1II CATG 2 cut(s) 71, 84
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 1 cut(s) 266
HpaII CCGG 3 cut(s) 95, 102, 363
HphI GGTGA 2 cut(s) 155, 324
Hpy166II GTNNAC 1 cut(s) 379
Hpy188I TCNGA 1 cut(s) 299
Hpy8I GTNNAC 1 cut(s) 379
HpyAV CCTTC 2 cut(s) 294, 322
HpyCH4V TGCA 4 cut(s) 32, 202, 328, 373
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 359
HpyF3I CTNAG 1 cut(s) 143
Hsp92II CATG 2 cut(s) 71, 84
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
KspI CCGCGG 1 cut(s) 291
LpnPI CCDG 9 cut(s) 108, 115, 152, 158, 179, 185, 194, 363, 376
Lsp1109I GCAGC 2 cut(s) 192, 214
LweI GCATC 1 cut(s) 88
MabI ACCWGGT 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 161, 182
MboII GAAGA 1 cut(s) 143
MluCI AATT 1 cut(s) 234
MlyI GAGTC 1 cut(s) 260
MnlI CCTC 7 cut(s) 19, 66, 118, 197, 200, 256, 345
MroNI GCCGGC 1 cut(s) 101
MroXI GAANNNNTTC 2 cut(s) 62, 221
MseI TTAA 2 cut(s) 12, 385
MspA1I CMGCKG 2 cut(s) 205, 290
MspCI CTTAAG 1 cut(s) 11
MspI CCGG 3 cut(s) 95, 102, 363
MspR9I CCNGG 3 cut(s) 95, 167, 173
Mva1269I GAATGC 2 cut(s) 204, 293
MvaI CCWGG 2 cut(s) 167, 173
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 2 cut(s) 290, 359
NaeI GCCGGC 1 cut(s) 103
NciI CCSGG 1 cut(s) 95
NcoI CCATGG 1 cut(s) 67
NdeI CATATG 1 cut(s) 274
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 2 cut(s) 71, 84
NmeAIII GCCGAG 1 cut(s) 118
NmuCI GTSAC 2 cut(s) 161, 182
PctI GAATGC 2 cut(s) 204, 293
PdiI GCCGGC 1 cut(s) 103
PdmI GAANNNNTTC 2 cut(s) 62, 221
PkrI GCNGC 3 cut(s) 204, 207, 292
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
Psp6I CCWGG 2 cut(s) 165, 171
PspFI CCCAGC 1 cut(s) 208
PspGI CCWGG 2 cut(s) 165, 171
PspPI GGNCC 2 cut(s) 169, 365
PstNI CAGNNNCTG 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 205
SacII CCGCGG 1 cut(s) 291
SaqAI TTAA 2 cut(s) 12, 385
SatI GCNGC 3 cut(s) 203, 206, 291
Sau96I GGNCC 2 cut(s) 169, 365
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 3 cut(s) 95, 167, 173
SetI ASST 9 cut(s) 12, 129, 139, 171, 189, 207, 252, 314, 337
SexAI ACCWGGT 1 cut(s) 165
SfaNI GCATC 1 cut(s) 88
Sfr303I CCGCGG 1 cut(s) 291
SgrBI CCGCGG 1 cut(s) 291
SinI GGWCC 2 cut(s) 169, 365
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 1 cut(s) 234
SsiI CCGC 2 cut(s) 288, 290
StyD4I CCNGG 3 cut(s) 93, 165, 171
StyI CCWWGG 1 cut(s) 67
TaqI TCGA 2 cut(s) 90, 129
TasI AATT 1 cut(s) 234
TauI GCSGC 1 cut(s) 293
Tru1I TTAA 2 cut(s) 12, 385
Tru9I TTAA 2 cut(s) 12, 385
TseFI GTSAC 2 cut(s) 161, 182
TseI GCWGC 2 cut(s) 202, 205
Tsp45I GTSAC 2 cut(s) 161, 182
TspDTI ATGAA 1 cut(s) 291
Vha464I CTTAAG 1 cut(s) 11
VpaK11BI GGWCC 2 cut(s) 169, 365
XmnI GAANNNNTTC 2 cut(s) 62, 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.