RchiOBHm_Chr2g0150451

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000173
Physical Location & Seq
Forward (+)
68126994 .. 68134025
7032 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51979

Sequence Viewer

Length: 2316 bp
ATGTGGAAGCTTAAGGTTGCAGAAGGTGGGGAAGATTCCTCGGCTTACATTTACAGCACGAACAACTTTGTGGGAAGGCAGACATGGGAGTTTGATCCTGATGCAGGGACTGCTGAAGAGCGAGCTGAGGTTGAAGCGGCTCGTCTTCATTTCTACAACAACCGCCATCAGGTTAAGCCCAGTGGTGACCTTCTTTGGAGATTGCAGTTCCTAAGGGAGAAGCAGTTCAAACAGACAATTCCTCCAATAAAAATTGAAGATGGCGAGGTTATCACATATGAAAAAACCACAGATGCATTGAGAAGGTCTGTCCACTTCTTCTCAGCGCTGCAAGCAAGCGATGGCCATTGGCCTGCGGAAAATGCTGGCCCTTTATTTTTCCTTCCTCCTATGGTTTCATGCTTGCTTAATGTCATAGTTATGCACATTACGGGGCATCTTAACAGTGTATTCTCTGAGGAGCATCGCAAAGAAATTCTGCGTTACATATACTATCATCAGAATGAAGATGGTGGTTGGGGACTACATGTCGAAGGTCATAGCACCATGTTCAGCACAGCTCTCAGCTACATTTGTATGCGTATTCTCGGAGAAGGACCTGATGATGGTGGCCAAGACAATGCTTGTCCGAGAGCAAGAAAATGGATTCTTGATCATGGTGGTGTCACACACATACCCTCTTGGGGAAAGACTTGGCTTTCGATACTCGGTTTGTTTAATTGGTCTGGAAGCAACCCTATTCCCCCAGAGTTTTGGACTATTCCTTCATTTCTTCCTATGCATCCAGCAAAAATGTGGTGCTATAGTAGGACGTCTTACATGCCAATGTCATACCTATATGGAAAAAGGTTTGTTGGCCCAATTACACCTCTCATTCTTCAATTGAGGGACGAACTTTTTATTCAACCTTACACTGAAATCAATTGGAAGGAAGTACGCCATCTATGTGCCAAAGAGGATATCTACTACCCTCATCCTTGGATACAGGATCTCCTTTGGGATACCCTCTACATTTCCACAGAGCCTCTTCTTACCCGTTGGCCTTTCAACAAGTTGATCAGAGAAAAGGCTCTACAAGTGACGATGGAGCATATTCATTACGAAGATGAGAACAGCCGATACATTACCATGGGGTGTTTGGAAAAGGTGTTATGTATGCTTGCCTGTTGGGCTGAAGATCCAAATGGGGACTATTTCAAGAAGCATCTAGCTAGGATCCCGGATTATTTATGGGTTGCTGAAGATGGGATGAAGATGCAAAGTTTTGGCAGTCAGGAGTGGGATACTAGTATTGCCATTCAAGCTTTGCTTGCTAGTAATCTCAAGGATGAAATTGGACCAACGCTTGCTAGAGGACATGACTTCATAAAGAAATCTCAGGTCAAGGACAACCCTTCTGGTGACTTCAAAAGCATGTACCGCCACATTTCTAAAGGATCGTGGACTTTCTCCGATCAAGATCATGGATGGCAAGTTTCTGATTGCACTGCAGAAGGTTTAAAGTGTTGTTTTCTGTTGTCGATGATGCCATCGGAGATAGTTGGTGAAAAAATGGAGCCTGAGCGCTTGTACGATTCTGTCAATGTTCTTCTTTCCCTACAGAGCAAGAATGGTGGTTTTTCAGCCTGGGAGCCAGCAGGGGCAGCAGAATGGTTAGAACTGTTAAATCCGACAGAGTTCTTGGAGGACATTGTAATTGAGCATGAACATGTTGAGTGCACTTCATCTGTAATCCAGGCTTTAGTTCTGTTCAAGAAGCTACACCCTGGGCATAGGAAGAAAGAGATTGAACATTCCATCACCAATGCTGTACGCTACGTTGAAAATATGCAAATGCCGGATGGTTCATGGTATGGAGATTGGGGAGTTTGCTTCACATATGGTACCTGGTTTGCACTAGGAGGATTGGCAGCTGCTGGCAAGACTTTTAGCACTTGTGCAGCCATGCGCAACGGGGTTAGCTTTCTACTTACGGTGCAGAGAGAGAACGGTGGTTGGGGAGAGAGTTATCTTTCATGTCCACAAAAGACATACATTCCTCTCGAAGGAAACCGATCCAATCTAGTACATACTGCTTGGGCTATGATGGGTCTCATTCATGCGGGACAGGCAGAAAGAGACCCAACACCTCTTCATCGCGCAGCAAAGTTTATAATCAATTCTCAACTGGAAAATGGTGATTTTCCCCAGCAGGAAATCACTGGAGTCTTCAAGAAGAACTGCATGCTACATTTTGCAGCATATAGAAATATATTCCCACTGTGGGCTCTTGCAGAATATCGCAATTGTTTTCCCTTGCCTTCCAAGGTGATGTAG

Protein Analysis

771

Amino Acids

88.29

Weight (kDa)

5.89

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_N PF13249 101 - 407 1.3e-34 Squalene-hopene cyclase N-terminal domain
SQHop_cyclase_C PF13243 426 - 762 2.5e-51 Squalene-hopene cyclase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2153
AatII GACGTC 1 cut(s) 815
Acc16I TGCGCA 1 cut(s) 1949
Acc65I GGTACC 1 cut(s) 1883
AccB1I GGYRCC 1 cut(s) 1883
AccII CGCG 1 cut(s) 2139
AciI CCGC 5 cut(s) 137, 163, 356, 1420, 2102
AclWI GGATC 7 cut(s) 89, 996, 1172, 1210, 1223, 1444, 2049
AcoI YGGCCR 2 cut(s) 343, 610
AcsI RAATTY 1 cut(s) 474
AcuI CTGAAG 3 cut(s) 135, 1194, 1260
AcyI GRCGYC 1 cut(s) 812
AfaI GTAC 6 cut(s) 936, 1418, 1571, 1812, 1885, 2067
AfeI AGCGCT 2 cut(s) 327, 1565
AfiI CCNNNNNNNGG 6 cut(s) 104, 169, 605, 683, 2045, 2263
AflII CTTAAG 1 cut(s) 11
AflIII ACRYGT 2 cut(s) 526, 1708
AhdI GACNNNNNGTC 1 cut(s) 527
AhlI ACTAGT 1 cut(s) 1286
AjnI CCWGG 4 cut(s) 1625, 1734, 1765, 1886
AloI GAACNNNNNNTCC 2 cut(s) 209, 241
AluBI AGCT 9 cut(s) 10, 125, 560, 567, 1211, 1304, 1759, 1913, 1962
AluI AGCT 9 cut(s) 10, 125, 560, 567, 1211, 1304, 1759, 1913, 1962
Alw21I GWGCWC 1 cut(s) 1721
Alw26I GTCTC 2 cut(s) 2096, 2112
Alw44I GTGCAC 1 cut(s) 1717
AlwI GGATC 7 cut(s) 89, 996, 1172, 1210, 1223, 1444, 2049
AlwNI CAGNNNCTG 2 cut(s) 110, 1916
Aor51HI AGCGCT 2 cut(s) 327, 1565
AoxI GGCC 6 cut(s) 343, 350, 367, 610, 856, 1040
ApaLI GTGCAC 1 cut(s) 1717
ApeKI GCWGC 7 cut(s) 328, 1643, 1910, 1913, 1940, 2141, 2237
ApoI RAATTY 1 cut(s) 474
ArsI GACNNNNNNTTYG 2 cut(s) 682, 714
Asp700I GAANNNNTTC 1 cut(s) 224
Asp718I GGTACC 1 cut(s) 1883
AspLEI GCGC 4 cut(s) 328, 1566, 1950, 2141
AspS9I GGNCC 4 cut(s) 368, 596, 857, 1337
AsuC2I CCSGG 1 cut(s) 1220
AsuHPI GGTGA 5 cut(s) 197, 1412, 1556, 1792, 2189
AvaII GGWCC 2 cut(s) 596, 1337
AxyI CCTNAGG 1 cut(s) 212
BaeGI GKGCMC 1 cut(s) 1721
BalI TGGCCA 2 cut(s) 345, 612
BamHI GGATCC 1 cut(s) 1215
BanI GGYRCC 1 cut(s) 1883
BanII GRGCYC 1 cut(s) 2269
BbsI GAAGAC 2 cut(s) 137, 2200
Bbv12I GWGCWC 1 cut(s) 1721
BbvCI CCTCAGC 1 cut(s) 126
BbvI GCAGC 7 cut(s) 315, 1655, 1900, 1922, 1952, 2153, 2249
BciT130I CCWGG 4 cut(s) 1627, 1736, 1767, 1888
BciVI GTATCC 3 cut(s) 975, 994, 1276
BclI TGATCA 2 cut(s) 652, 1056
BcnI CCSGG 1 cut(s) 1220
BcoDI GTCTC 2 cut(s) 2096, 2112
BcuI ACTAGT 1 cut(s) 1286
BfaI CTAG 7 cut(s) 1208, 1212, 1287, 1314, 1350, 1898, 2063
BfmI CTRYAG 3 cut(s) 802, 1488, 1598
BfoI RGCGCY 2 cut(s) 329, 1567
BfrI CTTAAG 1 cut(s) 11
BfuI GTATCC 3 cut(s) 975, 994, 1276
BglI GCCNNNNNGGC 1 cut(s) 1169
BisI GCNGC 8 cut(s) 138, 329, 1644, 1911, 1914, 1941, 2142, 2238
BlsI GCNGC 8 cut(s) 139, 330, 1645, 1912, 1915, 1942, 2143, 2239
Bme1390I CCNGG 5 cut(s) 1220, 1627, 1736, 1767, 1888
Bme18I GGWCC 2 cut(s) 596, 1337
BmeRI GACNNNNNGTC 1 cut(s) 527
BmgT120I GGNCC 4 cut(s) 368, 596, 857, 1337
BmiI GGNNCC 4 cut(s) 1217, 1557, 1632, 1885
BmrFI CCNGG 5 cut(s) 1220, 1627, 1736, 1767, 1888
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 8 cut(s) 91, 283, 445, 472, 790, 1213, 1245, 1515
BmuI ACTGGG 1 cut(s) 174
BpiI GAAGAC 2 cut(s) 137, 2200
BpmI CTGGAG 1 cut(s) 2223
Bpu10I CCTNAGC 2 cut(s) 126, 1560
BpuEI CTTGAG 1 cut(s) 1307
BpuMI CCSGG 1 cut(s) 1220
BsaBI GATNNNNATC 1 cut(s) 1458
BsaHI GRCGYC 1 cut(s) 812
BsaI GGTCTC 2 cut(s) 2096, 2112
BsaJI CCNNGG 7 cut(s) 39, 977, 1128, 1626, 1765, 1766, 2304
BsaXI ACNNNNNCTCC 6 cut(s) 209, 226, 239, 256, 975, 1005
Bsc4I CCNNNNNNNGG 6 cut(s) 104, 169, 605, 683, 2045, 2263
Bse1I ACTGG 3 cut(s) 180, 2172, 2206
Bse21I CCTNAGG 1 cut(s) 212
Bse8I GATNNNNATC 1 cut(s) 1458
BseBI CCWGG 4 cut(s) 1627, 1736, 1767, 1888
BseDI CCNNGG 7 cut(s) 39, 977, 1128, 1626, 1765, 1766, 2304
BseGI GGATG 6 cut(s) 781, 973, 1254, 1333, 1472, 1846
BseJI GATNNNNATC 1 cut(s) 1458
BseLI CCNNNNNNNGG 6 cut(s) 104, 169, 605, 683, 2045, 2263
BseMII CTCAG 6 cut(s) 117, 336, 447, 577, 1391, 1551
BseNI ACTGG 3 cut(s) 180, 2172, 2206
BseRI GAGGAG 1 cut(s) 473
BseSI GKGCMC 1 cut(s) 1721
BseXI GCAGC 7 cut(s) 315, 1655, 1900, 1922, 1952, 2153, 2249
BseYI CCCAGC 1 cut(s) 2187
BsgI GTGCAG 2 cut(s) 1959, 1997
Bsh1236I CGCG 1 cut(s) 2139
BshFI GGCC 6 cut(s) 345, 352, 369, 612, 858, 1042
BshNI GGYRCC 1 cut(s) 1883
BsiHKAI GWGCWC 1 cut(s) 1721
BsiSI CCGG 2 cut(s) 1220, 1838
BslFI GGGAC 5 cut(s) 121, 534, 902, 1202, 2118
BslI CCNNNNNNNGG 6 cut(s) 104, 169, 605, 683, 2045, 2263
BsmAI GTCTC 2 cut(s) 2096, 2112
BsmFI GGGAC 5 cut(s) 121, 534, 902, 1202, 2118
BsnI GGCC 6 cut(s) 345, 352, 369, 612, 858, 1042
Bso31I GGTCTC 2 cut(s) 2096, 2112
Bsp1286I GDGCHC 2 cut(s) 1721, 2269
Bsp19I CCATGG 1 cut(s) 1128
BspACI CCGC 5 cut(s) 137, 163, 356, 1420, 2102
BspANI GGCC 6 cut(s) 345, 352, 369, 612, 858, 1042
BspCNI CTCAG 6 cut(s) 118, 335, 448, 576, 1390, 1552
BspFNI CGCG 1 cut(s) 2139
BspLI GGNNCC 4 cut(s) 1217, 1557, 1632, 1885
BspMAI CTGCAG 1 cut(s) 1492
BspPI GGATC 7 cut(s) 89, 996, 1172, 1210, 1223, 1444, 2049
BspQI GCTCTTC 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 1883
BspTI CTTAAG 1 cut(s) 11
BspTNI GGTCTC 2 cut(s) 2096, 2112
BsrI ACTGG 3 cut(s) 180, 2172, 2206
BssECI CCNNGG 7 cut(s) 39, 977, 1128, 1626, 1765, 1766, 2304
BssNI GRCGYC 1 cut(s) 812
BssT1I CCWWGG 3 cut(s) 977, 1128, 2304
Bst2UI CCWGG 4 cut(s) 1627, 1736, 1767, 1888
Bst4CI ACNGT 5 cut(s) 446, 1662, 1975, 1991, 2262
Bst6I CTCTTC 3 cut(s) 111, 1032, 2136
BstACI GRCGYC 1 cut(s) 812
BstAFI CTTAAG 1 cut(s) 11
BstAPI GCANNNNNTGC 1 cut(s) 110
BstDEI CTNAG 7 cut(s) 126, 212, 322, 456, 563, 1377, 1560
BstDSI CCRYGG 1 cut(s) 1128
BstEII GGTNACC 1 cut(s) 185
BstENI CCTNNNNNAGG 2 cut(s) 102, 2043
BstF5I GGATG 6 cut(s) 781, 973, 1254, 1333, 1472, 1846
BstFNI CGCG 1 cut(s) 2139
BstH2I RGCGCY 2 cut(s) 329, 1567
BstHHI GCGC 4 cut(s) 328, 1566, 1950, 2141
BstMAI GTCTC 2 cut(s) 2096, 2112
BstMWI GCNNNNNNNGC 9 cut(s) 110, 332, 362, 1169, 1301, 1310, 1419, 1643, 2108
BstNI CCWGG 4 cut(s) 1627, 1736, 1767, 1888
BstNSI RCATGY 5 cut(s) 530, 823, 1417, 1712, 2227
BstPI GGTNACC 1 cut(s) 185
BstSCI CCNGG 5 cut(s) 1218, 1625, 1734, 1765, 1886
BstSFI CTRYAG 3 cut(s) 802, 1488, 1598
BstSLI GKGCMC 1 cut(s) 1721
BstUI CGCG 1 cut(s) 2139
BstV1I GCAGC 7 cut(s) 315, 1655, 1900, 1922, 1952, 2153, 2249
BstV2I GAAGAC 2 cut(s) 137, 2200
BstX2I RGATCY 3 cut(s) 988, 1177, 1215
BstXI CCANNNNNNTGG 1 cut(s) 753
BstYI RGATCY 3 cut(s) 988, 1177, 1215
Bsu36I CCTNAGG 1 cut(s) 212
BsuI GTATCC 3 cut(s) 975, 994, 1276
BsuRI GGCC 6 cut(s) 345, 352, 369, 612, 858, 1042
BtgI CCRYGG 1 cut(s) 1128
BtgZI GCGATG 3 cut(s) 354, 449, 2120
BtsCI GGATG 6 cut(s) 781, 973, 1254, 1333, 1472, 1846
BtsI GCAGTG 1 cut(s) 1485
BtsIMutI CAGTG 6 cut(s) 187, 451, 912, 1485, 2199, 2258
CaiI CAGNNNCTG 2 cut(s) 110, 1916
CfoI GCGC 4 cut(s) 328, 1566, 1950, 2141
Cfr13I GGNCC 4 cut(s) 368, 596, 857, 1337
CsiI ACCWGGT 1 cut(s) 1886
Csp6I GTAC 6 cut(s) 935, 1417, 1570, 1811, 1884, 2066
CspCI CAANNNNNGTGG 2 cut(s) 1594, 1629
CviQI GTAC 6 cut(s) 935, 1417, 1570, 1811, 1884, 2066
DdeI CTNAG 7 cut(s) 126, 212, 322, 456, 563, 1377, 1560
DraI TTTAAA 1 cut(s) 1500
DriI GACNNNNNGTC 1 cut(s) 527
EaeI YGGCCR 2 cut(s) 343, 610
Eam1104I CTCTTC 3 cut(s) 111, 1032, 2136
Eam1105I GACNNNNNGTC 1 cut(s) 527
EarI CTCTTC 3 cut(s) 111, 1032, 2136
Eco130I CCWWGG 3 cut(s) 977, 1128, 2304
Eco24I GRGCYC 1 cut(s) 2269
Eco31I GGTCTC 2 cut(s) 2096, 2112
Eco32I GATATC 1 cut(s) 961
Eco47I GGWCC 2 cut(s) 596, 1337
Eco47III AGCGCT 2 cut(s) 327, 1565
Eco57I CTGAAG 3 cut(s) 135, 1194, 1260
Eco81I CCTNAGG 1 cut(s) 212
Eco91I GGTNACC 1 cut(s) 185
EcoNI CCTNNNNNAGG 2 cut(s) 102, 2043
EcoO109I RGGNCCY 1 cut(s) 596
EcoO65I GGTNACC 1 cut(s) 185
EcoRII CCWGG 4 cut(s) 1625, 1734, 1765, 1886
EcoRV GATATC 1 cut(s) 961
EcoT14I CCWWGG 3 cut(s) 977, 1128, 2304
EcoT22I ATGCAT 2 cut(s) 298, 783
EcoT38I GRGCYC 1 cut(s) 2269
ErhI CCWWGG 3 cut(s) 977, 1128, 2304
FalI AAGNNNNNCTT 2 cut(s) 1293, 1325
FaqI GGGAC 5 cut(s) 121, 534, 902, 1202, 2118
FauI CCCGC 1 cut(s) 2095
FauNDI CATATG 2 cut(s) 277, 1879
FbaI TGATCA 2 cut(s) 652, 1056
Fnu4HI GCNGC 8 cut(s) 138, 329, 1644, 1911, 1914, 1941, 2142, 2238
FokI GGATG 6 cut(s) 768, 960, 1261, 1340, 1479, 1853
FriOI GRGCYC 1 cut(s) 2269
Fsp4HI GCNGC 8 cut(s) 138, 329, 1644, 1911, 1914, 1941, 2142, 2238
FspBI CTAG 7 cut(s) 1208, 1212, 1287, 1314, 1350, 1898, 2063
FspI TGCGCA 1 cut(s) 1949
GlaI GCGC 4 cut(s) 327, 1565, 1949, 2140
GluI GCNGC 8 cut(s) 138, 329, 1644, 1911, 1914, 1941, 2142, 2238
GsaI CCCAGC 1 cut(s) 2191
GsuI CTGGAG 1 cut(s) 2223
HaeII RGCGCY 2 cut(s) 329, 1567
HaeIII GGCC 6 cut(s) 345, 352, 369, 612, 858, 1042
HapII CCGG 2 cut(s) 1220, 1838
HhaI GCGC 4 cut(s) 328, 1566, 1950, 2141
Hin1I GRCGYC 1 cut(s) 812
Hin6I GCGC 4 cut(s) 326, 1564, 1948, 2139
HinP1I GCGC 4 cut(s) 326, 1564, 1948, 2139
HindIII AAGCTT 2 cut(s) 8, 1302
HinfI GANTC 4 cut(s) 35, 646, 1574, 2205
HpaII CCGG 2 cut(s) 1220, 1838
HphI GGTGA 5 cut(s) 197, 1412, 1556, 1792, 2189
Hpy166II GTNNAC 4 cut(s) 313, 1443, 1719, 2021
Hpy188I TCNGA 9 cut(s) 457, 501, 590, 630, 1061, 1453, 1480, 1534, 1671
Hpy188III TCNNGA 9 cut(s) 98, 650, 726, 1198, 1274, 1457, 1753, 2042, 2212
Hpy8I GTNNAC 4 cut(s) 313, 1443, 1719, 2021
HpyCH4III ACNGT 5 cut(s) 446, 1662, 1975, 1991, 2262
HpyCH4IV ACGT 2 cut(s) 812, 1818
HpyF10VI GCNNNNNNNGC 9 cut(s) 110, 332, 362, 1169, 1301, 1310, 1419, 1643, 2108
HpyF3I CTNAG 7 cut(s) 126, 212, 322, 456, 563, 1377, 1560
HpySE526I ACGT 2 cut(s) 812, 1818
Hsp92I GRCGYC 1 cut(s) 812
HspAI GCGC 4 cut(s) 326, 1564, 1948, 2139
KpnI GGTACC 1 cut(s) 1887
Ksp22I TGATCA 2 cut(s) 652, 1056
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 4 cut(s) 460, 1087, 1555, 1630
Lsp1109I GCAGC 7 cut(s) 315, 1655, 1900, 1922, 1952, 2153, 2249
LweI GCATC 8 cut(s) 91, 283, 445, 472, 790, 1213, 1245, 1515
MabI ACCWGGT 1 cut(s) 1886
MaeI CTAG 7 cut(s) 1208, 1212, 1287, 1314, 1350, 1898, 2063
MaeII ACGT 2 cut(s) 812, 1818
MaeIII GTNAC 5 cut(s) 185, 482, 664, 1078, 1400
MfeI CAATTG 3 cut(s) 881, 922, 2284
MflI RGATCY 3 cut(s) 988, 1177, 1215
MhlI GDGCHC 2 cut(s) 1721, 2269
MlsI TGGCCA 2 cut(s) 345, 612
MluNI TGGCCA 2 cut(s) 345, 612
MlyI GAGTC 1 cut(s) 2214
MmeI TCCRAC 1 cut(s) 1694
Mox20I TGGCCA 2 cut(s) 345, 612
Mph1103I ATGCAT 2 cut(s) 298, 783
MroXI GAANNNNTTC 1 cut(s) 224
MscI TGGCCA 2 cut(s) 345, 612
MseI TTAA 7 cut(s) 12, 174, 408, 441, 717, 1499, 1664
MslI CAYNNNNRTG 8 cut(s) 419, 501, 575, 660, 824, 945, 1127, 1707
Msp20I TGGCCA 2 cut(s) 345, 612
MspA1I CMGCKG 1 cut(s) 1913
MspCI CTTAAG 1 cut(s) 11
MspI CCGG 2 cut(s) 1220, 1838
MspR9I CCNGG 5 cut(s) 1220, 1627, 1736, 1767, 1888
MunI CAATTG 3 cut(s) 881, 922, 2284
MvaI CCWGG 4 cut(s) 1627, 1736, 1767, 1888
MvnI CGCG 1 cut(s) 2139
MwoI GCNNNNNNNGC 9 cut(s) 110, 332, 362, 1169, 1301, 1310, 1419, 1643, 2108
NciI CCSGG 1 cut(s) 1220
NcoI CCATGG 1 cut(s) 1128
NdeI CATATG 2 cut(s) 277, 1879
NlaIV GGNNCC 4 cut(s) 1217, 1557, 1632, 1885
NmeAIII GCCGAG 1 cut(s) 20
NmuCI GTSAC 4 cut(s) 185, 664, 1078, 1400
NsbI TGCGCA 1 cut(s) 1949
NsiI ATGCAT 2 cut(s) 298, 783
NspI RCATGY 5 cut(s) 530, 823, 1417, 1712, 2227
PaeI GCATGC 1 cut(s) 2227
PasI CCCWGGG 1 cut(s) 1766
PciI ACATGT 2 cut(s) 526, 1708
PciSI GCTCTTC 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 224
PfeI GAWTC 3 cut(s) 35, 646, 1574
PfoI TCCNGGA 1 cut(s) 1218
PkrI GCNGC 8 cut(s) 139, 330, 1645, 1912, 1915, 1942, 2143, 2239
PleI GAGTC 1 cut(s) 2213
PpsI GAGTC 1 cut(s) 2213
PpuMI RGGWCCY 1 cut(s) 596
PscI ACATGT 2 cut(s) 526, 1708
PsiI TTATAA 1 cut(s) 2153
Psp5II RGGWCCY 1 cut(s) 596
Psp6I CCWGG 4 cut(s) 1625, 1734, 1765, 1886
PspEI GGTNACC 1 cut(s) 185
PspFI CCCAGC 1 cut(s) 2187
PspGI CCWGG 4 cut(s) 1625, 1734, 1765, 1886
PspN4I GGNNCC 4 cut(s) 1217, 1557, 1632, 1885
PspPI GGNCC 4 cut(s) 368, 596, 857, 1337
PspPPI RGGWCCY 1 cut(s) 596
PsrI GAACNNNNNNTAC 2 cut(s) 1103, 1135
PstI CTGCAG 1 cut(s) 1492
PstNI CAGNNNCTG 2 cut(s) 110, 1916
PsuI RGATCY 3 cut(s) 988, 1177, 1215
PvuII CAGCTG 1 cut(s) 1913
RsaI GTAC 6 cut(s) 936, 1418, 1571, 1812, 1885, 2067
RsaNI GTAC 6 cut(s) 935, 1417, 1570, 1811, 1884, 2066
RseI CAYNNNNRTG 8 cut(s) 419, 501, 575, 660, 824, 945, 1127, 1707
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 7 cut(s) 12, 174, 408, 441, 717, 1499, 1664
SatI GCNGC 8 cut(s) 138, 329, 1644, 1911, 1914, 1941, 2142, 2238
Sau96I GGNCC 4 cut(s) 368, 596, 857, 1337
SchI GAGTC 1 cut(s) 2214
ScrFI CCNGG 5 cut(s) 1220, 1627, 1736, 1767, 1888
SduI GDGCHC 2 cut(s) 1721, 2269
SexAI ACCWGGT 1 cut(s) 1886
SfaNI GCATC 8 cut(s) 91, 283, 445, 472, 790, 1213, 1245, 1515
SfcI CTRYAG 3 cut(s) 802, 1488, 1598
SinI GGWCC 2 cut(s) 596, 1337
SmiMI CAYNNNNRTG 8 cut(s) 419, 501, 575, 660, 824, 945, 1127, 1707
SmlI CTYRAG 2 cut(s) 11, 1322
SmoI CTYRAG 2 cut(s) 11, 1322
SpeI ACTAGT 1 cut(s) 1286
SphI GCATGC 1 cut(s) 2227
SsiI CCGC 5 cut(s) 137, 163, 356, 1420, 2102
SspMI CTAG 7 cut(s) 1208, 1212, 1287, 1314, 1350, 1898, 2063
StyD4I CCNGG 5 cut(s) 1218, 1625, 1734, 1765, 1886
StyI CCWWGG 3 cut(s) 977, 1128, 2304
TaaI ACNGT 5 cut(s) 446, 1662, 1975, 1991, 2262
TaiI ACGT 2 cut(s) 815, 1821
TaqI TCGA 4 cut(s) 531, 701, 1520, 2043
TatI WGTACW 1 cut(s) 2065
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 3 cut(s) 35, 646, 1574
Tru1I TTAA 7 cut(s) 12, 174, 408, 441, 717, 1499, 1664
Tru9I TTAA 7 cut(s) 12, 174, 408, 441, 717, 1499, 1664
TscAI CASTG 6 cut(s) 187, 451, 919, 1492, 2206, 2265
TseFI GTSAC 4 cut(s) 185, 664, 1078, 1400
TseI GCWGC 7 cut(s) 328, 1643, 1910, 1913, 1940, 2141, 2237
Tsp45I GTSAC 4 cut(s) 185, 664, 1078, 1400
TspRI CASTG 6 cut(s) 187, 451, 919, 1492, 2206, 2265
Vha464I CTTAAG 1 cut(s) 11
VneI GTGCAC 1 cut(s) 1717
VpaK11BI GGWCC 2 cut(s) 596, 1337
XagI CCTNNNNNAGG 2 cut(s) 102, 2043
XapI RAATTY 1 cut(s) 474
XceI RCATGY 5 cut(s) 530, 823, 1417, 1712, 2227
XcmI CCANNNNNNNNNTGG 2 cut(s) 792, 1135
XmnI GAANNNNTTC 1 cut(s) 224
XspI CTAG 7 cut(s) 1208, 1212, 1287, 1314, 1350, 1898, 2063
ZraI GACGTC 1 cut(s) 813
Zsp2I ATGCAT 2 cut(s) 298, 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.