Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029876.1

Orthogroup ID

OG0000173

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2027

Gene Structure 2027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029876.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atgcgtataatcacctctactcttaccttcttctcagcgttgcaggcgagcgatggccattggcctgcggaaaatgccggccctttgtttttccttcctcccttggtcatatgtatgtacattactggccatcttaacagtgtattccctgaagagcatcgcaaagaaattctgcgttacatatactatcatcagaatgaagatggtggttggggactacacgtcgaaggtcacagcaccatgttcagcacagctctcagctacatttgtatgcgtattctcggagaaggacctgatgatggtggccaagacaatgcttgtccaagagcaagaaagtggattcttgatcacggtggtgtcacacacataccctcttggggaaagacttggctttcggaggacatctactatcctcatccttggatacaggatctcctatgggatagcctctacatttccacagagcctattcttactcgttggcccttcaacaaattgatcagagaaaaggctcttcaagtgacgatgaagcatattcattacgaagatgagaacagtcgatacattaccattgggtgtgtggaaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

196

Amino Acids

22.72

Weight (kDa)

5.84

Isoelectric Point (pI)

54.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca	FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica	MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica	Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis	pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis	RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata	RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora	Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii	Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa	Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha	Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana	Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	1 cut(s)	438
AcoI	YGGCCR	3 cut(s)	55, 127, 304
AcsI	RAATTY	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	2 cut(s)	299, 377
AflIII	ACRYGT	1 cut(s)	220
AgsI	TTSAA	2 cut(s)	490, 518
AhdI	GACNNNNNGTC	1 cut(s)	221
AjiI	CACGTC	1 cut(s)	223
AleI	CACNNNNGTG	1 cut(s)	354
AluBI	AGCT	2 cut(s)	254, 261
AluI	AGCT	2 cut(s)	254, 261
AlwI	GGATC	1 cut(s)	438
AoxI	GGCC	6 cut(s)	55, 62, 79, 127, 304, 482
ApoI	RAATTY	1 cut(s)	168
ArsI	GACNNNNNNTTYG	2 cut(s)	376, 408
AspS9I	GGNCC	3 cut(s)	80, 290, 483
AsuHPI	GGTGA	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	290
BalI	TGGCCA	3 cut(s)	57, 129, 306
BccI	CCATC	4 cut(s)	47, 138, 197, 293
BciVI	GTATCC	1 cut(s)	417
BclI	TGATCA	2 cut(s)	346, 498
BfuI	GTATCC	1 cut(s)	417
Bme18I	GGWCC	1 cut(s)	290
BmeRI	GACNNNNNGTC	1 cut(s)	221
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	3 cut(s)	80, 290, 483
BmsI	GCATC	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	102, 419
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 377
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	130
BseDI	CCNNGG	2 cut(s)	102, 419
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	2 cut(s)	299, 377
BseMII	CTCAG	2 cut(s)	48, 271
BseNI	ACTGG	1 cut(s)	130
BshFI	GGCC	6 cut(s)	57, 64, 81, 129, 306, 484
BsiSI	CCGG	1 cut(s)	78
BslFI	GGGAC	1 cut(s)	228
BslI	CCNNNNNNNGG	2 cut(s)	299, 377
BsmFI	GGGAC	1 cut(s)	228
BsnI	GGCC	6 cut(s)	57, 64, 81, 129, 306, 484
Bsp1407I	TGTACA	1 cut(s)	117
Bsp143I	GATC	3 cut(s)	346, 430, 498
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	6 cut(s)	57, 64, 81, 129, 306, 484
BspCNI	CTCAG	2 cut(s)	47, 270
BspPI	GGATC	1 cut(s)	438
BspQI	GCTCTTC	2 cut(s)	147, 519
BsrFI	RCCGGY	1 cut(s)	77
BsrGI	TGTACA	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	130
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	102, 419
BssMI	GATC	3 cut(s)	346, 430, 498
BssT1I	CCWWGG	2 cut(s)	102, 419
Bst4CI	ACNGT	3 cut(s)	140, 353, 557
Bst6I	CTCTTC	2 cut(s)	147, 519
BstAUI	TGTACA	1 cut(s)	117
BstC8I	GCNNGC	4 cut(s)	45, 49, 66, 79
BstDEI	CTNAG	2 cut(s)	34, 257
BstF5I	GGATG	1 cut(s)	415
BstKTI	GATC	3 cut(s)	349, 433, 501
BstMBI	GATC	3 cut(s)	346, 430, 498
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 74
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BsuI	GTATCC	1 cut(s)	417
BsuRI	GGCC	6 cut(s)	57, 64, 81, 129, 306, 484
BtgZI	GCGATG	2 cut(s)	66, 143
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	415
BtsIMutI	CAGTG	1 cut(s)	145
Cac8I	GCNNGC	4 cut(s)	45, 49, 66, 79
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	3 cut(s)	80, 290, 483
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	1 cut(s)	241
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	2 cut(s)	34, 257
DpnI	GATC	3 cut(s)	348, 432, 500
DpnII	GATC	3 cut(s)	346, 430, 498
DriI	GACNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	3 cut(s)	55, 127, 304
Eam1104I	CTCTTC	2 cut(s)	147, 519
Eam1105I	GACNNNNNGTC	1 cut(s)	221
EarI	CTCTTC	2 cut(s)	147, 519
Eco130I	CCWWGG	2 cut(s)	102, 419
Eco47I	GGWCC	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	171
EcoO109I	RGGNCCY	1 cut(s)	290
EcoT14I	CCWWGG	2 cut(s)	102, 419
ErhI	CCWWGG	2 cut(s)	102, 419
FaeI	CATG	1 cut(s)	244
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	1 cut(s)	240
FauNDI	CATATG	1 cut(s)	110
FbaI	TGATCA	2 cut(s)	346, 498
FokI	GGATG	1 cut(s)	402
HaeIII	GGCC	6 cut(s)	57, 64, 81, 129, 306, 484
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	1 cut(s)	244
HinfI	GANTC	1 cut(s)	340
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	1 cut(s)	4
Hpy188I	TCNGA	4 cut(s)	195, 284, 397, 503
Hpy188III	TCNNGA	1 cut(s)	344
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	5 cut(s)	37, 104, 221, 281, 496
HpyCH4III	ACNGT	3 cut(s)	140, 353, 557
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	1 cut(s)	43
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 74
HpyF3I	CTNAG	2 cut(s)	34, 257
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	244
KroI	GCCGGC	1 cut(s)	77
KroNI	GCCGGC	1 cut(s)	79
Ksp22I	TGATCA	2 cut(s)	346, 498
Kzo9I	GATC	3 cut(s)	346, 430, 498
LguI	GCTCTTC	2 cut(s)	147, 519
LpnPI	CCDG	7 cut(s)	29, 78, 91, 111, 162, 306, 413
LweI	GCATC	1 cut(s)	166
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	4 cut(s)	176, 230, 358, 520
MalI	GATC	3 cut(s)	348, 432, 500
MboI	GATC	3 cut(s)	346, 430, 498
MboII	GAAGA	5 cut(s)	22, 164, 212, 506, 557
MflI	RGATCY	1 cut(s)	430
MlsI	TGGCCA	3 cut(s)	57, 129, 306
MluCI	AATT	2 cut(s)	168, 494
MluNI	TGGCCA	3 cut(s)	57, 129, 306
MnlI	CCTC	6 cut(s)	25, 108, 382, 391, 423, 458
Mox20I	TGGCCA	3 cut(s)	57, 129, 306
MroNI	GCCGGC	1 cut(s)	77
MscI	TGGCCA	3 cut(s)	57, 129, 306
MseI	TTAA	1 cut(s)	135
MslI	CAYNNNNRTG	4 cut(s)	113, 195, 269, 354
Msp20I	TGGCCA	3 cut(s)	57, 129, 306
MspI	CCGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	44, 74
NaeI	GCCGGC	1 cut(s)	79
NdeI	CATATG	1 cut(s)	110
NdeII	GATC	3 cut(s)	346, 430, 498
NgoMIV	GCCGGC	1 cut(s)	77
NlaIII	CATG	1 cut(s)	244
NmuCI	GTSAC	3 cut(s)	230, 358, 520
OliI	CACNNNNGTG	1 cut(s)	354
PciSI	GCTCTTC	2 cut(s)	147, 519
PdiI	GCCGGC	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	340
PpuMI	RGGWCCY	1 cut(s)	290
Psp5II	RGGWCCY	1 cut(s)	290
PspPI	GGNCC	3 cut(s)	80, 290, 483
PspPPI	RGGWCCY	1 cut(s)	290
PsrI	GAACNNNNNNTAC	2 cut(s)	545, 577
PsuI	RGATCY	1 cut(s)	430
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
RseI	CAYNNNNRTG	4 cut(s)	113, 195, 269, 354
SapI	GCTCTTC	2 cut(s)	147, 519
SaqAI	TTAA	1 cut(s)	135
Sau3AI	GATC	3 cut(s)	346, 430, 498
Sau96I	GGNCC	3 cut(s)	80, 290, 483
SetI	ASST	7 cut(s)	17, 29, 225, 232, 256, 263, 295
SfaNI	GCATC	1 cut(s)	166
SinI	GGWCC	1 cut(s)	290
SmiMI	CAYNNNNRTG	4 cut(s)	113, 195, 269, 354
Sse9I	AATT	2 cut(s)	168, 494
SsiI	CCGC	1 cut(s)	68
StyI	CCWWGG	2 cut(s)	102, 419
TaaI	ACNGT	3 cut(s)	140, 353, 557
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	2 cut(s)	225, 559
TasI	AATT	2 cut(s)	168, 494
TatI	WGTACW	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	3 cut(s)	230, 358, 520
Tsp45I	GTSAC	3 cut(s)	230, 358, 520
TspDTI	ATGAA	3 cut(s)	213, 527, 542
TspRI	CASTG	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	1 cut(s)	168
XcmI	CCANNNNNNNNNTGG	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.