AT1G78960

Belongs to the terpene cyclase mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000173
Physical Location & Seq
Forward (+)
29696394 .. 29701439
5046 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78960.2

Sequence Viewer

Length: 2292 bp
ATGTGGAAGTTGAAGATAGGAGAGGGAAATGGAGAAGATCCTTACTTGTTCAGCAGCAACAACTTCGTCGGACGTCAAACATGGGAGTTTGATCCCAAAGCCGGCACACCTGAGGAACGAGCCGCCGTCGAAGATGCTCGCCGGAACTATTTAGACAACCGTCCCCGTGTTAAAGGTTGCAGTGATCTCTTGTGGCGAATGCAATTTTTGAAAGAGGCGAAATTCGAGCAAGTGATCCCGCCGGTGAAGATCGACGACGGCGAAGGCATAACTTACAAAAACGCGACGGATGCGTTACGGAGAGCAGTTTCTTTCTACTCGGCTTTGCAGTCCTCCGATGGCCACTGGCCGGCGGAAATCACCGGAACTCTCTTCTTCCTTCCTCCATTGGTATTTTGTTTCTATATCACAGGACACCTCGAGAAGATATTTGATGCAGAACATCGCAAAGAGATGCTTCGGCATATCTATTGCCACCAGAACGAAGACGGTGGATGGGGTTTACATATTGAGGGAAAGAGCGTTATGTTCTGCACCGTACTGAATTACATATGCTTGCGTATGCTCGGAGAAGGTCCCAATGGAGGGCGCAATAACGCCTGCAAACGGGCCAGGCAATGGATTCTTGACCATGGTGGTGTGACTTATATTCCTTCTTGGGGAAAAATTTGGCTCTCGATACTCGGAATCTATGATTGGTCTGGAACCAACCCAATGCCTCCCGAGATTTGGTTGCTGCCTTCTTTCTTTCCAATACACTTAGGAAAAACTTTGTGTTATACCCGGATGGTTTATATGCCCATGTCTTATCTATATGGGAAACGATTTGTTGGTCCTCTTACACCTCTTATTATGCTATTGCGCAAAGAACTGCACTTGCAACCTTATGAGGAAATCAATTGGAACAAAGCGCGCCGTCTATGTGCAAAAGAAGACATGATTTATCCTCATCCTCTGGTTCAAGATTTGTTATGGGACACTCTTCACAATTTTGTGGAGCCTATCCTTACAAATTGGCCGTTAAAAAAACTTGTACGGGAAAAGGCTCTTCGAGTGGCAATGGAACACATACATTATGAGGACGAAAATAGCCATTATATTACCATCGGATGTGTTGAGAAGGTTCTGTGCATGCTTGCTTGCTGGATCGAGAATCCTAATGGAGATCACTTTAAGAAACATCTCGCTAGAATTCCGGACTTCATGTGGGTTGCTGAAGACGGACTGAAAATGCAGAGCTTTGGAAGTCAACTCTGGGACACAGTTTTTGCGATTCAAGCTTTACTTGCTTGTGACCTTTCTGACGAAACTGATGATGTACTCAGGAAAGGACACAGTTTCATCAAAAAATCCCAGGTTAGAGAAAACCCTTCAGGTGACTTTAAGAGCATGTATCGCCATATTTCCAAAGGAGCCTGGACTCTGTCCGATCGAGATCATGGATGGCAAGTCTCAGATTGTACAGCTGAAGCTTTGAAGTGTTGCATGCTGCTCTCCATGATGCCAGCTGAGGTCGTTGGCCAGAAAATAGATCCTGAACAATTATATGATTCTGTTAATCTCTTGCTATCGTTGCAGGGTGAAAAAGGAGGTTTGACTGCATGGGAGCCTGTCCGTGCACAAGAATGGCTGGAATTGCTCAATCCCACAGATTTCTTTACTTGTGTTATGGCTGAACGCGAGTATGTAGAATGTACCTCAGCTGTTATACAAGCTTTGGTACTGTTCAAACAACTTTATCCGGATCACAGGACAAAAGAGATCATCAAGTCGATTGAGAAAGGGGTGCAATTCATTGAAAGCAAACAAACGCCTGATGGTTCATGGCATGGAAACTGGGGTATCTGTTTCATCTACGCTACTTGGTTTGCTCTGAGCGGCCTAGCAGCCGCTGGTAAAACTTACAAAAGTTGCCTGGCTGTGCGCAAAGGTGTAGATTTCCTGCTTGCGATACAGGAAGAAGATGGAGGTTGGGGCGAAAGCCATCTGTCATGCCCTGAGCAGAGATACATACCATTAGAAGGGAACAGATCAAACCTAGTGCAAACCGCATGGGCTATGATGGGTTTGATTCATGCCGGACAGGCCGAGAGAGATCCTACACCTCTTCACCGTGCTGCGAAACTTATCATCACTTCACAACTTGAAAATGGGGACTTTCCGCAACAGGAAATATTAGGAGTGTTCATGAATACATGCATGCTACACTATGCTACGTACAGAAACATCTTCCCACTATGGGCACTCGCGGAATATCGGAAAGCTGCCTTCGCAACTCATCAAGATCTTTAG

Protein Analysis

763

Amino Acids

87.51

Weight (kDa)

6.13

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQHop_cyclase_N PF13249 100 - 403 4.9e-42 Squalene-hopene cyclase N-terminal domain
SQHop_cyclase_C PF13243 416 - 754 8.2e-51 Squalene-hopene cyclase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 76
Acc16I TGCGCA 2 cut(s) 863, 1925
AccB7I CCANNNNNTGG 1 cut(s) 618
AccBSI CCGCTC 1 cut(s) 1878
AccII CGCG 4 cut(s) 284, 913, 1680, 2249
AccIII TCCGGA 2 cut(s) 1195, 1741
AciI CCGC 8 cut(s) 123, 239, 353, 1878, 1890, 2049, 2162, 2249
AclWI GGATC 7 cut(s) 32, 86, 229, 1154, 1526, 1752, 2090
AcoI YGGCCR 4 cut(s) 340, 347, 1016, 1519
AcsI RAATTY 3 cut(s) 221, 666, 1191
AcuI CTGAAG 3 cut(s) 1236, 1356, 1488
AcyI GRCGYC 1 cut(s) 73
AfaI GTAC 7 cut(s) 540, 1035, 1320, 1462, 1696, 1722, 2219
AgsI TTSAA 8 cut(s) 13, 211, 962, 1277, 1477, 1729, 1799, 2147
AjnI CCWGG 4 cut(s) 611, 1353, 1415, 1914
AjuI GAANNNNNNNTTGG 2 cut(s) 679, 711
AluBI AGCT 8 cut(s) 1239, 1280, 1466, 1472, 1508, 1703, 1715, 2264
AluI AGCT 8 cut(s) 1239, 1280, 1466, 1472, 1508, 1703, 1715, 2264
Alw21I GWGCWC 1 cut(s) 1621
Alw26I GTCTC 1 cut(s) 1456
Alw44I GTGCAC 1 cut(s) 1617
AlwI GGATC 7 cut(s) 32, 86, 229, 1154, 1526, 1752, 2090
AlwNI CAGNNNCTG 1 cut(s) 1892
Ama87I CYCGRG 2 cut(s) 419, 722
Aor13HI TCCGGA 2 cut(s) 1195, 1741
AoxI GGCC 7 cut(s) 340, 347, 609, 1016, 1519, 1879, 2085
ApaLI GTGCAC 1 cut(s) 1617
ApeKI GCWGC 6 cut(s) 54, 736, 1489, 1886, 2117, 2264
ApoI RAATTY 3 cut(s) 221, 666, 1191
ArsI GACNNNNNNTTYG 2 cut(s) 1250, 1282
AspLEI GCGC 5 cut(s) 591, 864, 913, 915, 1926
AspS9I GGNCC 3 cut(s) 575, 609, 833
AsuC2I CCSGG 1 cut(s) 784
AsuHPI GGTGA 5 cut(s) 256, 352, 1388, 1592, 2102
AvaI CYCGRG 2 cut(s) 419, 722
AvaII GGWCC 2 cut(s) 575, 833
AxyI CCTNAGG 1 cut(s) 111
BaeGI GKGCMC 2 cut(s) 1621, 2245
BaeI ACNNNNGTAYC 2 cut(s) 1825, 1858
BalI TGGCCA 2 cut(s) 342, 1521
BbsI GAAGAC 3 cut(s) 492, 939, 1224
Bbv12I GWGCWC 1 cut(s) 1621
BbvCI CCTCAGC 2 cut(s) 1509, 1699
BbvI GCAGC 6 cut(s) 66, 723, 1476, 1898, 2104, 2251
BccI CCATC 9 cut(s) 332, 489, 781, 1112, 1437, 1811, 1958, 1992, 2056
BceAI ACGGC 4 cut(s) 110, 274, 900, 1003
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BciT130I CCWGG 4 cut(s) 613, 1355, 1417, 1916
BcnI CCSGG 1 cut(s) 784
BcoDI GTCTC 1 cut(s) 1456
BfaI CTAG 3 cut(s) 1188, 1883, 2039
BglI GCCNNNNNGGC 1 cut(s) 2084
BglII AGATCT 1 cut(s) 2284
BisI GCNGC 9 cut(s) 55, 123, 737, 1490, 1879, 1887, 1890, 2118, 2265
BlsI GCNGC 9 cut(s) 56, 124, 738, 1491, 1880, 1888, 1891, 2119, 2266
Bme1390I CCNGG 5 cut(s) 613, 784, 1355, 1417, 1916
Bme18I GGWCC 2 cut(s) 575, 833
BmeT110I CYCGRG 2 cut(s) 419, 722
BmgT120I GGNCC 3 cut(s) 575, 609, 833
BmiI GGNNCC 5 cut(s) 577, 706, 999, 1414, 1608
BmrFI CCNGG 5 cut(s) 613, 784, 1355, 1417, 1916
BmrI ACTGGG 1 cut(s) 1846
BmsI GCATC 5 cut(s) 124, 280, 424, 444, 1491
BmuI ACTGGG 1 cut(s) 1846
BoxI GACNNNNGTC 1 cut(s) 159
BpiI GAAGAC 3 cut(s) 492, 939, 1224
Bpu10I CCTNAGC 3 cut(s) 1509, 1699, 1998
BpuMI CCSGG 1 cut(s) 784
BsaAI YACGTR 1 cut(s) 2217
BsaBI GATNNNNATC 1 cut(s) 1434
BsaHI GRCGYC 1 cut(s) 73
BsaJI CCNNGG 2 cut(s) 631, 1353
BsaWI WCCGGW 3 cut(s) 362, 1195, 1741
Bse118I RCCGGY 3 cut(s) 101, 241, 349
Bse1I ACTGG 2 cut(s) 350, 1841
Bse21I CCTNAGG 1 cut(s) 111
Bse3DI GCAATG 2 cut(s) 623, 1065
Bse8I GATNNNNATC 1 cut(s) 1434
BseAI TCCGGA 2 cut(s) 1195, 1741
BseBI CCWGG 4 cut(s) 613, 1355, 1417, 1916
BseDI CCNNGG 2 cut(s) 631, 1353
BseGI GGATG 6 cut(s) 295, 500, 792, 949, 1115, 1448
BseJI GATNNNNATC 1 cut(s) 1434
BseMI GCAATG 2 cut(s) 623, 1065
BseMII CTCAG 7 cut(s) 102, 1336, 1467, 1500, 1713, 1865, 1989
BseNI ACTGG 2 cut(s) 350, 1841
BsePI GCGCGC 1 cut(s) 911
BseSI GKGCMC 2 cut(s) 1621, 2245
BseXI GCAGC 6 cut(s) 66, 723, 1476, 1898, 2104, 2251
BsgI GTGCAG 2 cut(s) 517, 857
Bsh1236I CGCG 4 cut(s) 284, 913, 1680, 2249
Bsh1285I CGRYCG 1 cut(s) 1432
BshFI GGCC 7 cut(s) 342, 349, 611, 1018, 1521, 1881, 2087
BsiEI CGRYCG 1 cut(s) 1432
BsiHKAI GWGCWC 1 cut(s) 1621
BsiHKCI CYCGRG 2 cut(s) 419, 722
BsiSI CCGG 9 cut(s) 102, 142, 242, 350, 363, 784, 1196, 1742, 2079
BslFI GGGAC 5 cut(s) 147, 561, 989, 1271, 2168
BsmAI GTCTC 1 cut(s) 1456
BsmFI GGGAC 5 cut(s) 147, 561, 989, 1271, 2168
BsmI GAATGC 1 cut(s) 204
BsnI GGCC 7 cut(s) 342, 349, 611, 1018, 1521, 1881, 2087
BsoBI CYCGRG 2 cut(s) 419, 722
Bsp1286I GDGCHC 2 cut(s) 1621, 2245
Bsp13I TCCGGA 2 cut(s) 1195, 1741
Bsp1407I TGTACA 1 cut(s) 1460
Bsp19I CCATGG 1 cut(s) 631
BspACI CCGC 8 cut(s) 123, 239, 353, 1878, 1890, 2049, 2162, 2249
BspANI GGCC 7 cut(s) 342, 349, 611, 1018, 1521, 1881, 2087
BspCNI CTCAG 7 cut(s) 103, 1335, 1466, 1501, 1712, 1866, 1990
BspEI TCCGGA 2 cut(s) 1195, 1741
BspFNI CGCG 4 cut(s) 284, 913, 1680, 2249
BspHI TCATGA 1 cut(s) 2187
BspLI GGNNCC 5 cut(s) 577, 706, 999, 1414, 1608
BspPI GGATC 7 cut(s) 32, 86, 229, 1154, 1526, 1752, 2090
BspQI GCTCTTC 1 cut(s) 1053
BsrBI CCGCTC 1 cut(s) 1878
BsrDI GCAATG 2 cut(s) 623, 1065
BsrFI RCCGGY 3 cut(s) 101, 241, 349
BsrGI TGTACA 1 cut(s) 1460
BsrI ACTGG 2 cut(s) 350, 1841
BssAI RCCGGY 3 cut(s) 101, 241, 349
BssECI CCNNGG 2 cut(s) 631, 1353
BssHII GCGCGC 1 cut(s) 911
BssNI GRCGYC 1 cut(s) 73
BssT1I CCWWGG 1 cut(s) 631
Bst2UI CCWGG 4 cut(s) 613, 1355, 1417, 1916
Bst4CI ACNGT 7 cut(s) 161, 491, 538, 1264, 1337, 1725, 2114
Bst6I CTCTTC 4 cut(s) 377, 987, 1053, 2112
BstACI GRCGYC 1 cut(s) 73
BstAUI TGTACA 1 cut(s) 1460
BstBAI YACGTR 1 cut(s) 2217
BstDEI CTNAG 8 cut(s) 111, 760, 1322, 1453, 1509, 1699, 1874, 1998
BstDSI CCRYGG 1 cut(s) 631
BstF5I GGATG 6 cut(s) 295, 500, 792, 949, 1115, 1448
BstFNI CGCG 4 cut(s) 284, 913, 1680, 2249
BstHHI GCGC 5 cut(s) 591, 864, 913, 915, 1926
BstMAI GTCTC 1 cut(s) 1456
BstMCI CGRYCG 1 cut(s) 1432
BstMWI GCNNNNNNNGC 8 cut(s) 290, 1277, 1286, 1395, 1573, 1636, 2084, 2270
BstNI CCWGG 4 cut(s) 613, 1355, 1417, 1916
BstNSI RCATGY 5 cut(s) 1135, 1393, 1489, 2199, 2203
BstPAI GACNNNNGTC 1 cut(s) 159
BstSCI CCNGG 5 cut(s) 611, 782, 1353, 1415, 1914
BstSLI GKGCMC 2 cut(s) 1621, 2245
BstSNI TACGTA 1 cut(s) 2217
BstUI CGCG 4 cut(s) 284, 913, 1680, 2249
BstV1I GCAGC 6 cut(s) 66, 723, 1476, 1898, 2104, 2251
BstV2I GAAGAC 3 cut(s) 492, 939, 1224
BstX2I RGATCY 4 cut(s) 37, 1531, 2095, 2284
BstYI RGATCY 4 cut(s) 37, 1531, 2095, 2284
Bsu36I CCTNAGG 1 cut(s) 111
BsuRI GGCC 7 cut(s) 342, 349, 611, 1018, 1521, 1881, 2087
BtgI CCRYGG 1 cut(s) 631
BtgZI GCGATG 1 cut(s) 428
BtsCI GGATG 6 cut(s) 295, 500, 792, 949, 1115, 1448
BtsI GCAGTG 1 cut(s) 187
BtsIMutI CAGTG 2 cut(s) 187, 343
CaiI CAGNNNCTG 1 cut(s) 1892
CciI TCATGA 1 cut(s) 2187
CfoI GCGC 5 cut(s) 591, 864, 913, 915, 1926
Cfr10I RCCGGY 3 cut(s) 101, 241, 349
Cfr13I GGNCC 3 cut(s) 575, 609, 833
Csp6I GTAC 7 cut(s) 539, 1034, 1319, 1461, 1695, 1721, 2218
CviQI GTAC 7 cut(s) 539, 1034, 1319, 1461, 1695, 1721, 2218
DdeI CTNAG 8 cut(s) 111, 760, 1322, 1453, 1509, 1699, 1874, 1998
EaeI YGGCCR 4 cut(s) 340, 347, 1016, 1519
Eam1104I CTCTTC 4 cut(s) 377, 987, 1053, 2112
EarI CTCTTC 4 cut(s) 377, 987, 1053, 2112
EciI GGCGGA 1 cut(s) 368
Eco105I TACGTA 1 cut(s) 2217
Eco130I CCWWGG 1 cut(s) 631
Eco47I GGWCC 2 cut(s) 575, 833
Eco57I CTGAAG 3 cut(s) 1236, 1356, 1488
Eco81I CCTNAGG 1 cut(s) 111
Eco88I CYCGRG 2 cut(s) 419, 722
EcoO109I RGGNCCY 1 cut(s) 575
EcoRI GAATTC 1 cut(s) 1191
EcoRII CCWGG 4 cut(s) 611, 1353, 1415, 1914
EcoT14I CCWWGG 1 cut(s) 631
EcoT22I ATGCAT 1 cut(s) 2201
ErhI CCWWGG 1 cut(s) 631
FalI AAGNNNNNCTT 4 cut(s) 441, 473, 1269, 1301
FaqI GGGAC 5 cut(s) 147, 561, 989, 1271, 2168
FauI CCCGC 1 cut(s) 246
FauNDI CATATG 1 cut(s) 551
Fnu4HI GCNGC 9 cut(s) 55, 123, 737, 1490, 1879, 1887, 1890, 2118, 2265
FokI GGATG 6 cut(s) 302, 507, 799, 936, 1122, 1455
Fsp4HI GCNGC 9 cut(s) 55, 123, 737, 1490, 1879, 1887, 1890, 2118, 2265
FspBI CTAG 3 cut(s) 1188, 1883, 2039
FspI TGCGCA 2 cut(s) 863, 1925
GlaI GCGC 5 cut(s) 590, 863, 912, 914, 1925
GluI GCNGC 9 cut(s) 55, 123, 737, 1490, 1879, 1887, 1890, 2118, 2265
HaeIII GGCC 7 cut(s) 342, 349, 611, 1018, 1521, 1881, 2087
HapII CCGG 9 cut(s) 102, 142, 242, 350, 363, 784, 1196, 1742, 2079
HhaI GCGC 5 cut(s) 591, 864, 913, 915, 1926
Hin1I GRCGYC 1 cut(s) 73
Hin6I GCGC 5 cut(s) 589, 862, 911, 913, 1924
HinP1I GCGC 5 cut(s) 589, 862, 911, 913, 1924
HincII GTYRAC 1 cut(s) 1250
HindII GTYRAC 1 cut(s) 1250
HindIII AAGCTT 3 cut(s) 1278, 1470, 1713
HinfI GANTC 7 cut(s) 622, 687, 1153, 1273, 1420, 1550, 2071
HpaII CCGG 9 cut(s) 102, 142, 242, 350, 363, 784, 1196, 1742, 2079
HphI GGTGA 5 cut(s) 256, 352, 1388, 1592, 2102
Hpy166II GTNNAC 3 cut(s) 503, 1250, 1619
Hpy8I GTNNAC 3 cut(s) 503, 1250, 1619
Hpy99I CGWCG 5 cut(s) 71, 131, 257, 260, 289
HpyAV CCTTC 9 cut(s) 257, 389, 566, 663, 750, 1114, 1380, 2015, 2278
HpyCH4III ACNGT 7 cut(s) 161, 491, 538, 1264, 1337, 1725, 2114
HpyCH4IV ACGT 2 cut(s) 73, 2216
HpyF10VI GCNNNNNNNGC 8 cut(s) 290, 1277, 1286, 1395, 1573, 1636, 2084, 2270
HpyF3I CTNAG 8 cut(s) 111, 760, 1322, 1453, 1509, 1699, 1874, 1998
HpySE526I ACGT 2 cut(s) 73, 2216
Hsp92I GRCGYC 1 cut(s) 73
HspAI GCGC 5 cut(s) 589, 862, 911, 913, 1924
Kpn2I TCCGGA 2 cut(s) 1195, 1741
KroI GCCGGC 2 cut(s) 101, 349
KroNI GCCGGC 2 cut(s) 103, 351
LguI GCTCTTC 1 cut(s) 1053
LmnI GCTCC 3 cut(s) 997, 1412, 1606
Lsp1109I GCAGC 6 cut(s) 66, 723, 1476, 1898, 2104, 2251
LweI GCATC 5 cut(s) 124, 280, 424, 444, 1491
MaeI CTAG 3 cut(s) 1188, 1883, 2039
MaeII ACGT 2 cut(s) 73, 2216
MaeIII GTNAC 4 cut(s) 294, 640, 1292, 1376
MbiI CCGCTC 1 cut(s) 1878
MfeI CAATTG 1 cut(s) 898
MflI RGATCY 4 cut(s) 37, 1531, 2095, 2284
MhlI GDGCHC 2 cut(s) 1621, 2245
MlsI TGGCCA 2 cut(s) 342, 1521
MluNI TGGCCA 2 cut(s) 342, 1521
MlyI GAGTC 1 cut(s) 1414
MmeI TCCRAC 1 cut(s) 49
Mox20I TGGCCA 2 cut(s) 342, 1521
Mph1103I ATGCAT 1 cut(s) 2201
MroI TCCGGA 2 cut(s) 1195, 1741
MroNI GCCGGC 2 cut(s) 101, 349
MscI TGGCCA 2 cut(s) 342, 1521
MseI TTAA 5 cut(s) 171, 1022, 1173, 1383, 1557
MslI CAYNNNNRTG 2 cut(s) 636, 1624
Msp20I TGGCCA 2 cut(s) 342, 1521
MspA1I CMGCKG 4 cut(s) 1466, 1508, 1703, 1892
MspI CCGG 9 cut(s) 102, 142, 242, 350, 363, 784, 1196, 1742, 2079
MspR9I CCNGG 5 cut(s) 613, 784, 1355, 1417, 1916
MunI CAATTG 1 cut(s) 898
Mva1269I GAATGC 1 cut(s) 204
MvaI CCWGG 4 cut(s) 613, 1355, 1417, 1916
MvnI CGCG 4 cut(s) 284, 913, 1680, 2249
MwoI GCNNNNNNNGC 8 cut(s) 290, 1277, 1286, 1395, 1573, 1636, 2084, 2270
NaeI GCCGGC 2 cut(s) 103, 351
NciI CCSGG 1 cut(s) 784
NcoI CCATGG 1 cut(s) 631
NdeI CATATG 1 cut(s) 551
NgoMIV GCCGGC 2 cut(s) 101, 349
NlaIV GGNNCC 5 cut(s) 577, 706, 999, 1414, 1608
NmeAIII GCCGAG 2 cut(s) 299, 2113
NmuCI GTSAC 3 cut(s) 640, 1292, 1376
NsbI TGCGCA 2 cut(s) 863, 1925
NsiI ATGCAT 1 cut(s) 2201
NspI RCATGY 5 cut(s) 1135, 1393, 1489, 2199, 2203
PaeI GCATGC 3 cut(s) 1135, 1489, 2203
PaeR7I CTCGAG 1 cut(s) 419
PagI TCATGA 1 cut(s) 2187
PauI GCGCGC 1 cut(s) 911
PciSI GCTCTTC 1 cut(s) 1053
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PctI GAATGC 1 cut(s) 204
PdiI GCCGGC 2 cut(s) 103, 351
PfeI GAWTC 6 cut(s) 622, 687, 1153, 1273, 1550, 2071
PflFI GACNNNGTC 1 cut(s) 1423
PflMI CCANNNNNTGG 1 cut(s) 618
PkrI GCNGC 9 cut(s) 56, 124, 738, 1491, 1880, 1888, 1891, 2119, 2266
Ple19I CGATCG 1 cut(s) 1432
PleI GAGTC 1 cut(s) 1414
PpsI GAGTC 1 cut(s) 1414
Ppu21I YACGTR 1 cut(s) 2217
PpuMI RGGWCCY 1 cut(s) 575
PshAI GACNNNNGTC 1 cut(s) 159
Psp5II RGGWCCY 1 cut(s) 575
Psp6I CCWGG 4 cut(s) 611, 1353, 1415, 1914
PspGI CCWGG 4 cut(s) 611, 1353, 1415, 1914
PspN4I GGNNCC 5 cut(s) 577, 706, 999, 1414, 1608
PspPI GGNCC 3 cut(s) 575, 609, 833
PspPPI RGGWCCY 1 cut(s) 575
PstNI CAGNNNCTG 1 cut(s) 1892
PsuI RGATCY 4 cut(s) 37, 1531, 2095, 2284
PsyI GACNNNGTC 1 cut(s) 1423
PteI GCGCGC 1 cut(s) 911
PvuI CGATCG 1 cut(s) 1432
PvuII CAGCTG 3 cut(s) 1466, 1508, 1703
RsaI GTAC 7 cut(s) 540, 1035, 1320, 1462, 1696, 1722, 2219
RsaNI GTAC 7 cut(s) 539, 1034, 1319, 1461, 1695, 1721, 2218
RseI CAYNNNNRTG 2 cut(s) 636, 1624
SapI GCTCTTC 1 cut(s) 1053
SaqAI TTAA 5 cut(s) 171, 1022, 1173, 1383, 1557
SatI GCNGC 9 cut(s) 55, 123, 737, 1490, 1879, 1887, 1890, 2118, 2265
Sau96I GGNCC 3 cut(s) 575, 609, 833
SchI GAGTC 1 cut(s) 1414
ScrFI CCNGG 5 cut(s) 613, 784, 1355, 1417, 1916
SduI GDGCHC 2 cut(s) 1621, 2245
SfaNI GCATC 5 cut(s) 124, 280, 424, 444, 1491
Sfr274I CTCGAG 1 cut(s) 419
SgrAI CRCCGGYG 1 cut(s) 241
SinI GGWCC 2 cut(s) 575, 833
SlaI CTCGAG 1 cut(s) 419
SmiMI CAYNNNNRTG 2 cut(s) 636, 1624
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
SnaBI TACGTA 1 cut(s) 2217
SphI GCATGC 3 cut(s) 1135, 1489, 2203
SsiI CCGC 8 cut(s) 123, 239, 353, 1878, 1890, 2049, 2162, 2249
SspI AATATT 1 cut(s) 2175
SspMI CTAG 3 cut(s) 1188, 1883, 2039
StyD4I CCNGG 5 cut(s) 611, 782, 1353, 1415, 1914
StyI CCWWGG 1 cut(s) 631
TaaI ACNGT 7 cut(s) 161, 491, 538, 1264, 1337, 1725, 2114
TaiI ACGT 2 cut(s) 76, 2219
TaqI TCGA 9 cut(s) 129, 225, 252, 420, 677, 1051, 1149, 1432, 1772
TatI WGTACW 2 cut(s) 1318, 1460
TauI GCSGC 3 cut(s) 125, 1881, 1892
TfiI GAWTC 6 cut(s) 622, 687, 1153, 1273, 1550, 2071
Tru1I TTAA 5 cut(s) 171, 1022, 1173, 1383, 1557
Tru9I TTAA 5 cut(s) 171, 1022, 1173, 1383, 1557
TscAI CASTG 2 cut(s) 187, 350
TseFI GTSAC 3 cut(s) 640, 1292, 1376
TseI GCWGC 6 cut(s) 54, 736, 1489, 1886, 2117, 2264
Tsp45I GTSAC 3 cut(s) 640, 1292, 1376
TspDTI ATGAA 8 cut(s) 1192, 1330, 1783, 1812, 1840, 2063, 2176, 2204
TspGWI ACGGA 4 cut(s) 302, 313, 1236, 1604
TspRI CASTG 2 cut(s) 187, 350
Tth111I GACNNNGTC 1 cut(s) 1423
Van91I CCANNNNNTGG 1 cut(s) 618
VneI GTGCAC 1 cut(s) 1617
VpaK11BI GGWCC 2 cut(s) 575, 833
XapI RAATTY 3 cut(s) 221, 666, 1191
XceI RCATGY 5 cut(s) 1135, 1393, 1489, 2199, 2203
XhoI CTCGAG 1 cut(s) 419
XspI CTAG 3 cut(s) 1188, 1883, 2039
ZraI GACGTC 1 cut(s) 74
Zsp2I ATGCAT 1 cut(s) 2201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.