Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000173

Physical Location & Seq

Genomic Coordinates Forward (+)

70054347 .. 70083654

Gene Structure 29308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG480900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTGGAAGCTTAAGGTTGCAGAAGGTGGGGAAGAGTCCTCGGCTTACATTTACAGCACGAACAACTTTGTGGGAAGGCAGACATGGGAGTTTGATCCTGATGCAGGAACTGATGAAGAGCGAGCTGAGGTTGAAGCGGCTCGTCTTCATTTCTACAACAATCGCCATCAGGTTAAGCCCAGTGGTGACCTTCTTTGGAGATTGCAGTTCCTAAGGGAGAAGCAGTTCAAACAGACAATTCCTCCAATAAAAATTGAAGATGGCGAGGTTATCACATATGAAAAAACCACAGATGCACTGAGAAGGTCTGTCCACTTCTTCTCAGCGCTGCAAGCAAGCGATGGCCATTGGCCTGCGGAAAATGCTGGCCCTTTATTTTTCCTTCCTCCTATGCCAGCCAAGAGTGATCTTTTACTTGTTGGCCATAATCGTCCATGTATTGTGCATTGGACTCTATGTCTTGAGATACCACGCAAAGAAAAAGGCGGAAGAGGCCTACACCGAGACCGATTTCTACAGAACTGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016104 GO:0016114 GO:0016853 GO:0016866 GO:0019742 GO:0019745 GO:0031559 GO:0042300 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00909 ko01110 map00909 map01110

Pfam Domains

Protein Families

SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

176

Amino Acids

20.32

Weight (kDa)

6.39

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66960 AT1G66960 AT1G66960 AT1G66960 AT1G78950 AT1G78950 AT1G78955 AT1G78955 AT1G78955 AT1G78955 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78960 AT1G78970 AT1G78970 AT1G78970
fragaria_vesca	FvH4_5g29480 FvH4_6g36450 FvH4_6g36450 FvH4_6g36500 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g36520 FvH4_6g37620
malus_domestica	MD03G1089600.v1.1 MD09G1167700.v1.1 MD09G1168200.v1.1 MD09G1168300.v1.1 MD11G1098600.v1.1 MD17G1158300.v1.1 MD17G1158700.v1.1 MD17G1159500.v1.1 MD17G1160500.v1.1 MD17G1182500.v1.1 MD17G1182700.v1.1 MD17G1245800.v1.1 MD17G1246300.v1.1 MD17G1246600.v1.1
prunus_persica	Prupe.3G025700_v2.0.a1 Prupe.3G025700_v2.0.a1 Prupe.3G025800_v2.0.a1 Prupe.3G025900_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026200_v2.0.a1 Prupe.3G026400_v2.0.a1 Prupe.3G026500_v2.0.a1 Prupe.3G026700_v2.0.a1 Prupe.3G026800_v2.0.a1
pyrus_communis	pycom03g07120 pycom09g08520 pycom09g08590 pycom09g08610 pycom10g10070 pycom11g08310 pycom16g19880 pycom17g15190 pycom17g15300
rosa_chinensis	RchiOBHm_Chr2g0136221 RchiOBHm_Chr2g0148451 RchiOBHm_Chr2g0148501 RchiOBHm_Chr2g0148521 RchiOBHm_Chr2g0148661 RchiOBHm_Chr2g0148701 RchiOBHm_Chr2g0148811 RchiOBHm_Chr2g0148941 RchiOBHm_Chr2g0148981 RchiOBHm_Chr2g0150451 RchiOBHm_Chr2g0150521 RchiOBHm_Chr2g0150611 RchiOBHm_Chr4g0420831 RchiOBHm_Chr5g0049791 RchiOBHm_Chr5g0049801
rosa_laevigata	RLG00000007735 RLG00000020351 RLG00000020352 RLG00000020357 RLG00000020358 RLG00000020360 RLG00000029093 RLG00000030686
rosa_multiflora	Rmu_co8274513.1_g000001 Rmu_sc0000048.1_g000003 Rmu_sc0000048.1_g000033 Rmu_sc0000048.1_g000039 Rmu_sc0001397.1_g000011 Rmu_sc0001998.1_g000039 Rmu_sc0002070.1_g000055 Rmu_sc0002082.1_g000052 Rmu_sc0003181.1_g000010 Rmu_sc0005104.1_g000005 Rmu_sc0006758.1_g000002 Rmu_sc0008411.1_g000029 Rmu_sc0008411.1_g000030 Rmu_sc0017472.1_g000001 Rmu_sc0017472.1_g000003 Rmu_sc0029876.1_g000001 Rmu_ssc0000480.1_g000024 Rmu_ssc0000480.1_g000036
rosa_roxburghii	Rroxscaffold_2G00097070 Rroxscaffold_2G00098540 Rroxscaffold_2G00098560 Rroxscaffold_2G00098570 Rroxscaffold_2G00098650 Rroxscaffold_2G00098710 Rroxscaffold_2G00098740 Rroxscaffold_3G00225830 Rroxscaffold_3G00236870 Rroxscaffold_4G00312240
rosa_rugosa	Rorug01G0047000 Rorug02G0372300 Rorug02G0407200 Rorug02G0407300 Rorug02G0408400 Rorug02G0421500 Rorug07G0208900
rosa_samantha	Rh2AG380200 Rh2AG465700 Rh2AG465800 Rh2AG466800 Rh2AG467100 Rh2AG467600 Rh2AG480900 Rh2AG481400 Rh2AG481700 Rh2CG073500 Rh2CG452200 Rh2CG453200 Rh2CG453600 Rh2CG454100 Rh2CG467100 Rh2CG467800 Rh2CG468000 Rh2DG403100 Rh2DG487800 Rh2DG487900 Rh2DG488800 Rh2DG502000 Rh2DG502200 Rh2DG502300 Rh2DG503100 Rh3AG319300 Rh4AG227700 Rh4BG371800 Rh5AG327400 Rh5DG350600 Rh7AG349800
rosa_wichuraiana	Rw0G010080 Rw2G031110 Rw2G037980 Rw2G037990 Rw2G038000 Rw2G038010 Rw2G038080 Rw2G038100 Rw2G039260 Rw2G039290 Rw2G039470 Rw4G019710 Rw5G030930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	137, 356, 486
AclWI	GGATC	1 cut(s)	89
AcoI	YGGCCR	2 cut(s)	343, 421
AfeI	AGCGCT	1 cut(s)	327
AfiI	CCNNNNNNNGG	1 cut(s)	104
AflII	CTTAAG	1 cut(s)	11
AgsI	TTSAA	3 cut(s)	134, 229, 257
AhdI	GACNNNNNGTC	1 cut(s)	456
AloI	GAACNNNNNNTCC	2 cut(s)	209, 241
AluBI	AGCT	2 cut(s)	10, 125
AluI	AGCT	2 cut(s)	10, 125
Alw26I	GTCTC	1 cut(s)	498
AlwI	GGATC	1 cut(s)	89
AlwNI	CAGNNNCTG	1 cut(s)	110
Aor51HI	AGCGCT	1 cut(s)	327
AoxI	GGCC	5 cut(s)	343, 350, 367, 421, 493
ApeKI	GCWGC	1 cut(s)	328
Asp700I	GAANNNNTTC	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	1 cut(s)	368
AsuHPI	GGTGA	1 cut(s)	197
AxyI	CCTNAGG	1 cut(s)	212
BalI	TGGCCA	2 cut(s)	345, 423
BbsI	GAAGAC	1 cut(s)	137
BbvCI	CCTCAGC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	315
BccI	CCATC	3 cut(s)	174, 254, 335
BcoDI	GTCTC	1 cut(s)	498
BfmI	CTRYAG	1 cut(s)	515
BfoI	RGCGCY	1 cut(s)	329
BfrI	CTTAAG	1 cut(s)	11
BisI	GCNGC	2 cut(s)	138, 329
BlsI	GCNGC	2 cut(s)	139, 330
BmeRI	GACNNNNNGTC	1 cut(s)	456
BmgT120I	GGNCC	1 cut(s)	368
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	2 cut(s)	91, 283
BmuI	ACTGGG	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	137
Bpu10I	CCTNAGC	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	482
BsaI	GGTCTC	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	39
BsaXI	ACNNNNNCTCC	4 cut(s)	209, 226, 239, 256
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	180
Bse21I	CCTNAGG	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMII	CTCAG	3 cut(s)	117, 290, 336
BseNI	ACTGG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	315
BshFI	GGCC	5 cut(s)	345, 352, 369, 423, 495
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmAI	GTCTC	1 cut(s)	498
BsnI	GGCC	5 cut(s)	345, 352, 369, 423, 495
Bso31I	GGTCTC	1 cut(s)	498
Bsp143I	GATC	2 cut(s)	94, 406
BspACI	CCGC	3 cut(s)	137, 356, 486
BspANI	GGCC	5 cut(s)	345, 352, 369, 423, 495
BspCNI	CTCAG	3 cut(s)	118, 291, 335
BspPI	GGATC	1 cut(s)	89
BspQI	GCTCTTC	1 cut(s)	111
BspTI	CTTAAG	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	498
BsrI	ACTGG	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	2 cut(s)	94, 406
Bst4CI	ACNGT	1 cut(s)	524
Bst6I	CTCTTC	3 cut(s)	27, 111, 484
BstAFI	CTTAAG	1 cut(s)	11
BstC8I	GCNNGC	6 cut(s)	123, 333, 337, 354, 367, 396
BstDEI	CTNAG	4 cut(s)	126, 212, 299, 322
BstEII	GGTNACC	1 cut(s)	185
BstENI	CCTNNNNNAGG	1 cut(s)	102
BstH2I	RGCGCY	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	2 cut(s)	97, 409
BstMAI	GTCTC	1 cut(s)	498
BstMBI	GATC	2 cut(s)	94, 406
BstMWI	GCNNNNNNNGC	3 cut(s)	332, 362, 492
BstPI	GGTNACC	1 cut(s)	185
BstSFI	CTRYAG	1 cut(s)	515
BstV1I	GCAGC	1 cut(s)	315
BstV2I	GAAGAC	1 cut(s)	137
Bsu36I	CCTNAGG	1 cut(s)	212
BsuRI	GGCC	5 cut(s)	345, 352, 369, 423, 495
BtgZI	GCGATG	1 cut(s)	354
BtsIMutI	CAGTG	2 cut(s)	187, 296
Cac8I	GCNNGC	6 cut(s)	123, 333, 337, 354, 367, 396
CaiI	CAGNNNCTG	1 cut(s)	110
CfoI	GCGC	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	368
CviAII	CATG	2 cut(s)	84, 435
DdeI	CTNAG	4 cut(s)	126, 212, 299, 322
DpnI	GATC	2 cut(s)	96, 408
DpnII	GATC	2 cut(s)	94, 406
DriI	GACNNNNNGTC	1 cut(s)	456
EaeI	YGGCCR	2 cut(s)	343, 421
Eam1104I	CTCTTC	3 cut(s)	27, 111, 484
Eam1105I	GACNNNNNGTC	1 cut(s)	456
EarI	CTCTTC	3 cut(s)	27, 111, 484
EciI	GGCGGA	1 cut(s)	501
Eco147I	AGGCCT	1 cut(s)	495
Eco31I	GGTCTC	1 cut(s)	498
Eco47III	AGCGCT	1 cut(s)	327
Eco81I	CCTNAGG	1 cut(s)	212
Eco91I	GGTNACC	1 cut(s)	185
EcoNI	CCTNNNNNAGG	1 cut(s)	102
EcoO65I	GGTNACC	1 cut(s)	185
FaeI	CATG	2 cut(s)	87, 438
FaiI	YATR	7 cut(s)	85, 277, 279, 392, 426, 436, 457
FatI	CATG	2 cut(s)	83, 434
FauNDI	CATATG	1 cut(s)	277
Fnu4HI	GCNGC	2 cut(s)	138, 329
Fsp4HI	GCNGC	2 cut(s)	138, 329
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	2 cut(s)	138, 329
HaeII	RGCGCY	1 cut(s)	329
HaeIII	GGCC	5 cut(s)	345, 352, 369, 423, 495
HhaI	GCGC	1 cut(s)	328
Hin1II	CATG	2 cut(s)	87, 438
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	2 cut(s)	35, 451
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188III	TCNNGA	2 cut(s)	98, 461
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	5 cut(s)	17, 69, 200, 297, 392
HpyCH4III	ACNGT	1 cut(s)	524
HpyCH4V	TGCA	6 cut(s)	20, 104, 205, 296, 331, 445
HpyF10VI	GCNNNNNNNGC	3 cut(s)	332, 362, 492
HpyF3I	CTNAG	4 cut(s)	126, 212, 299, 322
Hsp92II	CATG	2 cut(s)	87, 438
HspAI	GCGC	1 cut(s)	326
Kzo9I	GATC	2 cut(s)	94, 406
LguI	GCTCTTC	1 cut(s)	111
LpnPI	CCDG	7 cut(s)	90, 111, 155, 193, 351, 366, 408
Lsp1109I	GCAGC	1 cut(s)	315
LweI	GCATC	2 cut(s)	91, 283
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	2 cut(s)	96, 408
MboI	GATC	2 cut(s)	94, 406
MboII	GAAGA	6 cut(s)	44, 128, 137, 269, 310, 501
MlsI	TGGCCA	2 cut(s)	345, 423
MluCI	AATT	2 cut(s)	237, 252
MluNI	TGGCCA	2 cut(s)	345, 423
MlyI	GAGTC	2 cut(s)	44, 445
MnlI	CCTC	6 cut(s)	49, 121, 252, 259, 396, 485
Mox20I	TGGCCA	2 cut(s)	345, 423
MroXI	GAANNNNTTC	1 cut(s)	224
MscI	TGGCCA	2 cut(s)	345, 423
MseI	TTAA	2 cut(s)	12, 174
Msp20I	TGGCCA	2 cut(s)	345, 423
MspCI	CTTAAG	1 cut(s)	11
MwoI	GCNNNNNNNGC	3 cut(s)	332, 362, 492
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	2 cut(s)	94, 406
NlaIII	CATG	2 cut(s)	87, 438
NmeAIII	GCCGAG	1 cut(s)	20
NmuCI	GTSAC	1 cut(s)	185
PceI	AGGCCT	1 cut(s)	495
PciSI	GCTCTTC	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	224
PkrI	GCNGC	2 cut(s)	139, 330
PleI	GAGTC	2 cut(s)	43, 445
PpsI	GAGTC	2 cut(s)	43, 445
PspEI	GGTNACC	1 cut(s)	185
PspPI	GGNCC	1 cut(s)	368
PstNI	CAGNNNCTG	1 cut(s)	110
SapI	GCTCTTC	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	12, 174
SatI	GCNGC	2 cut(s)	138, 329
Sau3AI	GATC	2 cut(s)	94, 406
Sau96I	GGNCC	1 cut(s)	368
SchI	GAGTC	2 cut(s)	44, 445
SetI	ASST	9 cut(s)	12, 18, 28, 127, 132, 174, 192, 270, 308
SfaNI	GCATC	2 cut(s)	91, 283
SfcI	CTRYAG	1 cut(s)	515
SmlI	CTYRAG	2 cut(s)	11, 461
SmoI	CTYRAG	2 cut(s)	11, 461
Sse9I	AATT	2 cut(s)	237, 252
SseBI	AGGCCT	1 cut(s)	495
SsiI	CCGC	3 cut(s)	137, 356, 486
StuI	AGGCCT	1 cut(s)	495
TaaI	ACNGT	1 cut(s)	524
TaqII	GACCGA	1 cut(s)	522
TasI	AATT	2 cut(s)	237, 252
TauI	GCSGC	1 cut(s)	140
Tru1I	TTAA	2 cut(s)	12, 174
Tru9I	TTAA	2 cut(s)	12, 174
TscAI	CASTG	2 cut(s)	187, 303
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	1 cut(s)	328
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	3 cut(s)	129, 137, 294
TspRI	CASTG	2 cut(s)	187, 303
Vha464I	CTTAAG	1 cut(s)	11
XagI	CCTNNNNNAGG	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.